ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7p18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CF150_HUMAN (Q8N884) Protein C6orf150 30 3.1
2GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 29 9.0
3GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 29 9.0

>CF150_HUMAN (Q8N884) Protein C6orf150|
          Length = 522

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 242 RQASCKQQRAGCSNRVLEAKAKEDAPSPAPPSQAGLRVRLIDRDA 376
           R  SC+Q+ A CS +        D PSP  P  A + VR   RDA
Sbjct: 117 RAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVR---RDA 158



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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 197 KGP*ARLLRFRGLGPRQASCKQQRAGCSNRVLEAKAKEDAPSPAPPSQ 340
           +GP  +    +G G R A C +   GC N   +     + P+PA P +
Sbjct: 239 RGP-MKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPRE 285



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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 197 KGP*ARLLRFRGLGPRQASCKQQRAGCSNRVLEAKAKEDAPSPAPPSQ 340
           +GP  +    +G G R A C +   GC N   +     + P+PA P +
Sbjct: 450 RGP-MKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPRE 496


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,526,017
Number of Sequences: 219361
Number of extensions: 746403
Number of successful extensions: 2216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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