| Clone Name | baal8e24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470104.1| Oryza sativa (japonica cultivar-group), mRNA Length = 6690 Score = 119 bits (60), Expect = 1e-23 Identities = 78/84 (92%) Strand = Plus / Plus Query: 402 ccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctgctcatgat 461 ||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct: 6037 ccagtttcaattagaaatatcccaaggaatccactggttgatgctgttgctgcccatgat 6096 Query: 462 cgaagcacgatgcggaaggtttca 485 ||||||||||||||||||||||| Sbjct: 6097 agaagcacgatgcggaaggtttca 6120 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 260 tgaaggcggctatgcacatgccgagcagccaccagtgacgggatggactgttggacctca 319 |||||| |||||| ||||||||||||||||||||| | ||| |||||||| |||| || Sbjct: 5895 tgaaggtggctatttacatgccgagcagccaccagtcatgggctggactgtgagacccca 5954 Query: 320 gatgcttcatcctaatta 337 |||||||||||| ||||| Sbjct: 5955 gatgcttcatccaaatta 5972
>dbj|AK104998.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-E05, full insert sequence Length = 1630 Score = 119 bits (60), Expect = 1e-23 Identities = 78/84 (92%) Strand = Plus / Plus Query: 402 ccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctgctcatgat 461 ||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct: 1002 ccagtttcaattagaaatatcccaaggaatccactggttgatgctgttgctgcccatgat 1061 Query: 462 cgaagcacgatgcggaaggtttca 485 ||||||||||||||||||||||| Sbjct: 1062 agaagcacgatgcggaaggtttca 1085 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 260 tgaaggcggctatgcacatgccgagcagccaccagtgacgggatggactgttggacctca 319 |||||| |||||| ||||||||||||||||||||| | ||| |||||||| |||| || Sbjct: 860 tgaaggtggctatttacatgccgagcagccaccagtcatgggctggactgtgagacccca 919 Query: 320 gatgcttcatcctaatta 337 |||||||||||| ||||| Sbjct: 920 gatgcttcatccaaatta 937
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 402 ccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctgctcatgat 461 ||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct: 33962088 ccagtttcaattagaaatatcccaaggaatccactggttgatgctgttgctgcccatgat 33962147 Query: 462 cgaagcacg 470 |||||||| Sbjct: 33962148 agaagcacg 33962156 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 260 tgaaggcggctatgcacatgccgagcagccaccagtgacgggatggactgttggacctca 319 |||||| |||||| ||||||||||||||||||||| | ||| |||||||| |||| || Sbjct: 33961946 tgaaggtggctatttacatgccgagcagccaccagtcatgggctggactgtgagacccca 33962005 Query: 320 gatgcttcatcctaatta 337 |||||||||||| ||||| Sbjct: 33962006 gatgcttcatccaaatta 33962023
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 402 ccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctgctcatgat 461 ||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct: 34052560 ccagtttcaattagaaatatcccaaggaatccactggttgatgctgttgctgcccatgat 34052619 Query: 462 cgaagcacg 470 |||||||| Sbjct: 34052620 agaagcacg 34052628 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 260 tgaaggcggctatgcacatgccgagcagccaccagtgacgggatggactgttggacctca 319 |||||| |||||| ||||||||||||||||||||| | ||| |||||||| |||| || Sbjct: 34052418 tgaaggtggctatttacatgccgagcagccaccagtcatgggctggactgtgagacccca 34052477 Query: 320 gatgcttcatcctaatta 337 |||||||||||| ||||| Sbjct: 34052478 gatgcttcatccaaatta 34052495
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 402 ccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctgctcatgat 461 ||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct: 95603 ccagtttcaattagaaatatcccaaggaatccactggttgatgctgttgctgcccatgat 95544 Query: 462 cgaagcacg 470 |||||||| Sbjct: 95543 agaagcacg 95535 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 260 tgaaggcggctatgcacatgccgagcagccaccagtgacgggatggactgttggacctca 319 |||||| |||||| ||||||||||||||||||||| | ||| |||||||| |||| || Sbjct: 95745 tgaaggtggctatttacatgccgagcagccaccagtcatgggctggactgtgagacccca 95686 Query: 320 gatgcttcatcctaatta 337 |||||||||||| ||||| Sbjct: 95685 gatgcttcatccaaatta 95668
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttg 450 |||||| ||||| | ||||| |||||||| |||||||||||| ||||||||| Sbjct: 24931 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctgttg 24880
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttg 450 |||||| ||||| | ||||| |||||||| |||||||||||| ||||||||| Sbjct: 22427885 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctgttg 22427936
>dbj|AK065463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013004M04, full insert sequence Length = 1765 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttg 450 |||||| ||||| | ||||| |||||||| |||||||||||| ||||||||| Sbjct: 824 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctgttg 773
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttg 450 |||||| ||||| | ||||| |||||||| |||||||||||| ||||||||| Sbjct: 22737796 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctgttg 22737847
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctg 453 |||||| ||||| | ||||| |||||||| |||||||||||| ||||| |||||| Sbjct: 23872709 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctattgctg 23872763
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctg 453 |||||| ||||| | ||||| |||||||| |||||||||||| ||||| |||||| Sbjct: 23800914 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctattgctg 23800968
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144767 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 399 aagccagtttcagtgagaaacatcccaagaaatccactggttgatgctgttgctg 453 |||||| ||||| | ||||| |||||||| |||||||||||| ||||| |||||| Sbjct: 100474 aagccaatttcaattagaaatatcccaagtaatccactggtttatgctattgctg 100420
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 tgatgaccttggtgaaggcggc 269 |||||||||||||||||||||| Sbjct: 55272 tgatgaccttggtgaaggcggc 55293
>gb|AE009642.1| Brucella melitensis 16M chromosome II, section 4 of 107 of the complete sequence Length = 14439 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 tgatgaccttggtgaaggcggc 269 |||||||||||||||||||||| Sbjct: 5610 tgatgaccttggtgaaggcggc 5589
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 tgatgaccttggtgaaggcggc 269 |||||||||||||||||||||| Sbjct: 55071 tgatgaccttggtgaaggcggc 55092
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 tgatgaccttggtgaaggcggc 269 |||||||||||||||||||||| Sbjct: 55120 tgatgaccttggtgaaggcggc 55141
>emb|AL390375.11| Human DNA sequence from clone RP11-505I19 on chromosome 13, complete sequence Length = 71118 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 235 taagtaaatatcttgatgaccttgg 259 |||||||||||||| |||||||||| Sbjct: 6117 taagtaaatatctttatgaccttgg 6141
>emb|AL365437.14| Human DNA sequence from clone RP11-343K13 on chromosome 6, complete sequence Length = 39186 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 agcaatataagtaaatatctt 248 ||||||||||||||||||||| Sbjct: 32857 agcaatataagtaaatatctt 32877
>gb|AY973195.1| Anopheles gambiae defensin 2 mRNA, complete cds Length = 292 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 ggctatgcacatgccgagcag 287 ||||||||||||||||||||| Sbjct: 214 ggctatgcacatgccgagcag 234
>emb|AL596255.17| Mouse DNA sequence from clone RP23-6K20 on chromosome 11 Contains the 3' end of the Myh13 gene for skeletal muscle myosin heavy polypeptide 13, the 5' end of the Gas7 gene for growth arrest specific 7, a novel gene and a CpG island, complete sequence Length = 251096 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gccagtttcagtgagaaacat 421 ||||||||||||||||||||| Sbjct: 73439 gccagtttcagtgagaaacat 73459
>gb|DQ370035.1| Anopheles gambiae defensin mRNA, complete cds Length = 282 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 ggctatgcacatgccgagcag 287 ||||||||||||||||||||| Sbjct: 218 ggctatgcacatgccgagcag 238
>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 53889 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 cttcagacacaacagaacata 33 ||||||||||||||||||||| Sbjct: 33388 cttcagacacaacagaacata 33368
>ref|XM_557449.1| Anopheles gambiae str. PEST ENSANGP00000026023 (ENSANGG00000022229), partial mRNA Length = 165 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 ggctatgcacatgccgagcag 287 ||||||||||||||||||||| Sbjct: 101 ggctatgcacatgccgagcag 121
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 aacctgaggtcacagattatc 387 ||||||||||||||||||||| Sbjct: 714619 aacctgaggtcacagattatc 714639
>emb|AL732502.32| Mouse DNA sequence from clone RP23-292G12 on chromosome 4, complete sequence Length = 173351 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 ctgaagattatcctcatggtg 177 ||||||||||||||||||||| Sbjct: 158159 ctgaagattatcctcatggtg 158139
>ref|XM_363862.1| Magnaporthe grisea 70-15 hypothetical protein (MG01788.4) partial mRNA Length = 2715 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gatcataacttggacacaga 196 |||||||||||||||||||| Sbjct: 679 gatcataacttggacacaga 698
>ref|XM_569072.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB00620) partial mRNA Length = 3454 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 gttgatgctgttgctgctca 457 |||||||||||||||||||| Sbjct: 2178 gttgatgctgttgctgctca 2159
>emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N17 on chromosome 20q11.1-11.21 Contains the 3' end of the HCK for hemopoietic cell kinase, the gene for novel protein (KIAA0255), the RPL24P1 gene for ribosomal protein L24 pseudogene 1 and two CpG Islands, complete sequence Length = 111694 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tgatgctgttgctgctcatg 459 |||||||||||||||||||| Sbjct: 1217 tgatgctgttgctgctcatg 1198
>emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 on chromosome 6q24 Contains the 3' end of a variant of the EPM2A gene for progressive myoclonus type 2 epilepsy (Lafora disease) protein (laforin) and a BTB/POZ domain zinc finger protein pseudogene, complete sequence Length = 115835 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aagtaaatatcttgatgacc 255 |||||||||||||||||||| Sbjct: 70178 aagtaaatatcttgatgacc 70159
>emb|AL806529.6| Mouse DNA sequence from clone RP23-234M1 on chromosome 11 Contains the 3' end of the Nxn gene for nucleoredoxin, complete sequence Length = 74841 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 tgggttaccttcagacacaacaga 28 |||| ||||||||||||||||||| Sbjct: 37947 tgggataccttcagacacaacaga 37970
>emb|AL645704.9| Mouse DNA sequence from clone RP23-414F19 on chromosome 13 Contains the Spi11 and Spi14 genes for serine protease inhibitors 11 and 14, the gene for a novel serine protease inhibitor (Spi) family member and a Spi11 pseudogene, complete sequence Length = 150424 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 acatcccaagaaatccactg 437 |||||||||||||||||||| Sbjct: 60850 acatcccaagaaatccactg 60869
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 gttgatgctgttgctgctca 457 |||||||||||||||||||| Sbjct: 175413 gttgatgctgttgctgctca 175432
>gb|AC151956.5| Medicago truncatula clone mth2-52p17, complete sequence Length = 120704 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 cactggttgatgctgttgct 452 |||||||||||||||||||| Sbjct: 94971 cactggttgatgctgttgct 94990
>dbj|AB091589.1| Crassostrea gigas DNA, microsatellite locus TNFRI-Crgi46 Length = 709 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 agtgttagaagaaggcaata 66 |||||||||||||||||||| Sbjct: 280 agtgttagaagaaggcaata 261
>dbj|AK049045.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230095A10 product:unclassifiable, full insert sequence Length = 1923 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 125 aggccagtcacatactgcagaatcaatg 152 |||||||||||||| ||| ||||||||| Sbjct: 1282 aggccagtcacatagtgcggaatcaatg 1309
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcttgatgaccttggtgaag 264 |||||||||||||||||||| Sbjct: 2555556 tcttgatgaccttggtgaag 2555537
>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete sequence Length = 105895 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 aggccagtcacatactgcagaatcaatg 152 |||||||||||||| ||| ||||||||| Sbjct: 104108 aggccagtcacatagtgcggaatcaatg 104081
>emb|AL844526.5| Mouse DNA sequence from clone RP23-201O18 on chromosome 2, complete sequence Length = 204398 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 aggccagtcacatactgcagaatcaatg 152 |||||||||||||| ||| ||||||||| Sbjct: 213 aggccagtcacatagtgcggaatcaatg 186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,172,196 Number of Sequences: 3902068 Number of extensions: 4172196 Number of successful extensions: 76677 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76445 Number of HSP's gapped (non-prelim): 232 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)