No.
Definition
Score (bits)
E Value
1 gb|AY106832.1| Zea mays PCO074808 mRNA sequence
525
e-146
2 dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clon...
498
e-137
3 dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clon...
498
e-137
4 dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clon...
468
e-129
5 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
137
4e-29
6 gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare str...
137
4e-29
7 gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome...
137
4e-29
8 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
137
4e-29
9 emb|AJ237988.1|VVI237988 Vitis vinifera mRNA for putative ripeni...
58
3e-05
10 ref|XM_469419.1| Oryza sativa (japonica cultivar-group), mRNA
52
0.002
11 dbj|AK099563.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.002
12 dbj|AK061982.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.002
13 dbj|AK061528.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.002
14 gb|AY108507.1| Zea mays PCO092437 mRNA sequence
44
0.46
15 gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp...
42
1.8
16 emb|AL157935.28| Human DNA sequence from clone RP11-203J24 on ch...
42
1.8
17 emb|AL033520.16|HS349A12 Human DNA sequence from clone RP3-349A1...
42
1.8
18 dbj|AK001094.1| Homo sapiens cDNA FLJ10232 fis, clone HEMBB1000244
42
1.8
19 gb|AC132812.9| Homo sapiens chromosome 17, clone RP13-104F24, co...
42
1.8
20 dbj|AP002992.4| Homo sapiens genomic DNA, chromosome 11 clone:CT...
42
1.8
21 dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP...
42
1.8
22 gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, com...
42
1.8
23 gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, com...
40
7.3
24 gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom...
40
7.3
25 gb|AY657496.1| Synthetic construct Peudomonas aeruginosa clone F...
40
7.3
26 ref|XM_959852.1| Neurospora crassa OR74A hypothetical protein (N...
40
7.3
27 ref|XM_324968.1| Neurospora crassa OR74A hypothetical protein (N...
40
7.3
28 gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome...
40
7.3
29 ref|XM_785414.1| PREDICTED: Strongylocentrotus purpuratus hypoth...
40
7.3
30 emb|BX842680.1| Neurospora crassa DNA linkage group I cosmid con...
40
7.3
31 emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom...
40
7.3
32 gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, comple...
40
7.3
33 gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, co...
40
7.3
34 emb|BX323041.9| Zebrafish DNA sequence from clone RP71-82P7 in l...
40
7.3
35 gb|AF035381.1|AF035381 Lytechinus variegatus ovoperoxidase (LvOp...
40
7.3
36 gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
40
7.3
37 gb|AE004544.1| Pseudomonas aeruginosa PAO1, section 105 of 529 o...
40
7.3
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 137 bits (69), Expect = 4e-29
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 234 tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 293
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 9175518 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 9175577
Query: 294 tataagaactatggcaccacgatggccggcctcaggg 330
|| |||||||| ||||| ||||||||||| |||||||
Sbjct: 9175578 tacaagaactacggcacgacgatggccggactcaggg 9175614
Score = 107 bits (54), Expect = 4e-20
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 459 ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 518
||||||||||| |||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 9176024 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 9176083
Query: 519 tgcttcgaggggatcatc 536
||||||||||||||||||
Sbjct: 9176084 tgcttcgaggggatcatc 9176101
Score = 103 bits (52), Expect = 6e-19
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 364 acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 423
|||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 9175842 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 9175901
Query: 424 atattctcaagaacatgcgcatccgcaa 451
| |||||||||||| |||||||||||||
Sbjct: 9175902 acattctcaagaacctgcgcatccgcaa 9175929
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 102 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 160
|||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 9175167 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 9175225
Score = 56.0 bits (28), Expect = 1e-04
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 165 gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 224
|||||||| |||||||||||||| |||||||| |||||| | || || ||||||| |||
Sbjct: 9175356 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 9175415
Query: 225 attg 228
||||
Sbjct: 9175416 attg 9175419
Score = 54.0 bits (27), Expect = 5e-04
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 329 ggcaattggctacaacttcgattacgacgagtaccacag 367
|||||| ||||||| |||||||||||| |||||||||||
Sbjct: 9175721 ggcaataggctacagcttcgattacgatgagtaccacag 9175759
Score = 40.1 bits (20), Expect = 7.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 gacctcgacgacactctgtacccg 188
|||||||||||||| |||||||||
Sbjct: 27851990 gacctcgacgacacgctgtacccg 27852013
>gb|AC107315.1 | Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0032O19, from chromosome 3, complete sequence
Length = 142248
Score = 137 bits (69), Expect = 4e-29
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 234 tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 293
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 110873 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 110814
Query: 294 tataagaactatggcaccacgatggccggcctcaggg 330
|| |||||||| ||||| ||||||||||| |||||||
Sbjct: 110813 tacaagaactacggcacgacgatggccggactcaggg 110777
Score = 107 bits (54), Expect = 4e-20
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 459 ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 518
||||||||||| |||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 110367 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 110308
Query: 519 tgcttcgaggggatcatc 536
||||||||||||||||||
Sbjct: 110307 tgcttcgaggggatcatc 110290
Score = 103 bits (52), Expect = 6e-19
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 364 acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 423
|||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 110549 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 110490
Query: 424 atattctcaagaacatgcgcatccgcaa 451
| |||||||||||| |||||||||||||
Sbjct: 110489 acattctcaagaacctgcgcatccgcaa 110462
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 102 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 160
|||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 111224 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 111166
Score = 56.0 bits (28), Expect = 1e-04
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 165 gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 224
|||||||| |||||||||||||| |||||||| |||||| | || || ||||||| |||
Sbjct: 111035 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 110976
Query: 225 attg 228
||||
Sbjct: 110975 attg 110972
Score = 54.0 bits (27), Expect = 5e-04
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 329 ggcaattggctacaacttcgattacgacgagtaccacag 367
|||||| ||||||| |||||||||||| |||||||||||
Sbjct: 110670 ggcaataggctacagcttcgattacgatgagtaccacag 110632
>gb|AC134238.2 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06,
complete sequence
Length = 119910
Score = 137 bits (69), Expect = 4e-29
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 234 tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 293
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 118698 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 118757
Query: 294 tataagaactatggcaccacgatggccggcctcaggg 330
|| |||||||| ||||| ||||||||||| |||||||
Sbjct: 118758 tacaagaactacggcacgacgatggccggactcaggg 118794
Score = 107 bits (54), Expect = 4e-20
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 459 ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 518
||||||||||| |||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 119204 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 119263
Query: 519 tgcttcgaggggatcatc 536
||||||||||||||||||
Sbjct: 119264 tgcttcgaggggatcatc 119281
Score = 103 bits (52), Expect = 6e-19
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 364 acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 423
|||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 119022 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 119081
Query: 424 atattctcaagaacatgcgcatccgcaa 451
| |||||||||||| |||||||||||||
Sbjct: 119082 acattctcaagaacctgcgcatccgcaa 119109
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 102 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 160
|||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 118347 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 118405
Score = 56.0 bits (28), Expect = 1e-04
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 165 gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 224
|||||||| |||||||||||||| |||||||| |||||| | || || ||||||| |||
Sbjct: 118536 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 118595
Query: 225 attg 228
||||
Sbjct: 118596 attg 118599
Score = 54.0 bits (27), Expect = 5e-04
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 329 ggcaattggctacaacttcgattacgacgagtaccacag 367
|||||| ||||||| |||||||||||| |||||||||||
Sbjct: 118901 ggcaataggctacagcttcgattacgatgagtaccacag 118939
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 137 bits (69), Expect = 4e-29
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 234 tacatggttgagaagctgggtattgaggagagcaagatcgaaaaccttggcaacctgctg 293
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 9173351 tacatggttgagaagctgggtattgaggagagcaagattgagaaccttggcaatctgctg 9173410
Query: 294 tataagaactatggcaccacgatggccggcctcaggg 330
|| |||||||| ||||| ||||||||||| |||||||
Sbjct: 9173411 tacaagaactacggcacgacgatggccggactcaggg 9173447
Score = 107 bits (54), Expect = 4e-20
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 459 ttcaccaacggtgacatgatccatgccgtgagagccctcaagaggctgggcctggaggac 518
||||||||||| |||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 9173857 ttcaccaacggcgacaaggaccacgccgtgagagccctcaagaggctggggctggaggac 9173916
Query: 519 tgcttcgaggggatcatc 536
||||||||||||||||||
Sbjct: 9173917 tgcttcgaggggatcatc 9173934
Score = 103 bits (52), Expect = 6e-19
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 364 acagctttgtccatggaaggctgccctacgacaacatcaagcccgaccccgttctcaagc 423
|||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 9173675 acagttttgtccatggaagactgccctacgagaacatcaagccggaccctgtcctgaagc 9173734
Query: 424 atattctcaagaacatgcgcatccgcaa 451
| |||||||||||| |||||||||||||
Sbjct: 9173735 acattctcaagaacctgcgcatccgcaa 9173762
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 102 atcatggagttcgacgagcgctgcctcaaggtccaggaccccaagttcgactgcctgct 160
|||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 9173000 atcatggagttcgaagaccgctgccacaaggtccaggagcccaaattcgactgcctgct 9173058
Score = 56.0 bits (28), Expect = 1e-04
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 165 gacctcgacgacactctgtacccgctgagctccgggatctcatcacacgtcaagaccaac 224
|||||||| |||||||||||||| |||||||| |||||| | || || ||||||| |||
Sbjct: 9173189 gacctcgatgacactctgtacccactgagctcggggatcgcgtcccatgtcaagaagaac 9173248
Query: 225 attg 228
||||
Sbjct: 9173249 attg 9173252
Score = 54.0 bits (27), Expect = 5e-04
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 329 ggcaattggctacaacttcgattacgacgagtaccacag 367
|||||| ||||||| |||||||||||| |||||||||||
Sbjct: 9173554 ggcaataggctacagcttcgattacgatgagtaccacag 9173592
Score = 40.1 bits (20), Expect = 7.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 gacctcgacgacactctgtacccg 188
|||||||||||||| |||||||||
Sbjct: 27943314 gacctcgacgacacgctgtacccg 27943337
>emb|AL157935.28 | Human DNA sequence from clone RP11-203J24 on chromosome 9 Contains the 5'
end of the ENG gene for endoglin (Osler-Rendu-Weber
syndrome 1) (END, ORW, HHT1, ORW1, CD105), the AK1 gene for
adenylate kinase 1, the ST6GALNAC6 gene for
CMP-NeuAC:(beta)-N-acetylgalactosaminide
(alpha)2,6-sialyltransferase member VI (ST6GALNACVI), the
SIAT7D gene for sialyltransferase 7D
((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,
3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)
(SIAT3C, ST6GALNAC4, ST6GALNACIV), the DPM2 gene for
dolichyl-phosphate mannosyltransferase polypeptide 2,
regulatory subunit (MGC21559), the gene for a novel protien
containing FLJ00179, a novel gene and ten CpG islands,
complete sequence
Length = 164201
Score = 42.1 bits (21), Expect = 1.8
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 495 ctcaagaggctgggcctggaggactgctt 523
|||||||| ||||| ||||||||||||||
Sbjct: 139696 ctcaagagactgggactggaggactgctt 139724
>emb|AL033520.16 |HS349A12 Human DNA sequence from clone RP3-349A12 on chromosome 6p21.31-22.2
Contains the 3' end of gene FLJ20302, the TAF11 gene for
TAF11 RNA polymerase II (TATA box binding protein
(TBP)-associated factor, 28 kD), the 5' end of gene
KIAA0229 for novel Ank, SAM (Sterile alpha motif) and
Phosphotyrosine interaction (PTB/PID) domain containing
protein (KIAA0229) and a CpG island, complete sequence
Length = 132948
Score = 42.1 bits (21), Expect = 1.8
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 495 ctcaagaggctgggcctggaggactgctt 523
|||||||||||||| | ||||||||||||
Sbjct: 77572 ctcaagaggctggggcaggaggactgctt 77544
>gb|AE004544.1 | Pseudomonas aeruginosa PAO1, section 105 of 529 of the complete
genome
Length = 11478
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 159 ctcttcgacctcgacgacac 178
||||||||||||||||||||
Sbjct: 3560 ctcttcgacctcgacgacac 3541
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,671,553
Number of Sequences: 3902068
Number of extensions: 3671553
Number of successful extensions: 62912
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62738
Number of HSP's gapped (non-prelim): 173
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)