Clone Information

BLAST Search Result

Clone Name	baal7p07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloropl...	311	1e-86
2	PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloropl...	298	1e-81
3	PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloropl...	296	4e-81
4	PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloropl...	296	4e-81
5	PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas...	296	6e-81
6	PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloropl...	294	2e-80
7	PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chlor...	288	1e-78
8	PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chlor...	281	2e-76
9	PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloropl...	280	3e-76
10	PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloropl...	181	9e-47
11	PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloropl...	176	3e-45
12	PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloropl...	169	2e-42
13	PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypep...	129	1e-30
14	PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypep...	129	5e-30
15	PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypep...	129	5e-30
16	PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypep...	116	5e-26
17	PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypep...	113	4e-25
18	PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypep...	110	1e-24
19	PSBO_BRARA (P83504) Oxygen-evolving enhancer protein 1, chloropl...	67	4e-11
20	CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like pro...	30	3.8
21	MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)	30	3.8
22	H11_ARATH (P26568) Histone H1.1	30	5.0
23	MYS_AEQIR (P24733) Myosin heavy chain, striated muscle	30	6.5
24	SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 prot...	29	8.5
25	SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1...	29	8.5
26	SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like...	29	8.5
27	SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like...	29	8.5
28	SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like...	29	8.5

>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  311 bits (797), Expect(3) = 1e-86
 Identities = 159/168 (94%), Positives = 160/168 (95%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           MAGFALATSALLVSGA+AEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK
Sbjct: 62  MAGFALATSALLVSGATAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 121

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
           AGKYEMKKFCLEPTSFTVKAEGIQKNEPP FQKTKLMTRLTYTLDEMEGPLEV    TLK
Sbjct: 122 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPRFQKTKLMTRLTYTLDEMEGPLEVRRRRTLK 181

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERV FLFTVKQLVATGKPESF  PFLVPS
Sbjct: 182 FEEKDGIDYAAVTVQLPGGERVAFLFTVKQLVATGKPESFR-PFLVPS 228



 Score = 25.0 bits (53), Expect(3) = 1e-86
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 230 RGSSFLDPKG 239



 Score = 24.6 bits (52), Expect(3) = 1e-86
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 8  RGVASKCADAAK 43
          R VASKCADAAK
Sbjct: 50 REVASKCADAAK 61

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>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  298 bits (762), Expect(2) = 1e-81
 Identities = 146/168 (86%), Positives = 155/168 (92%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL+VSGA+AEG PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV SF FK
Sbjct: 68  VAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVASFAFK 127

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY  KKFCLEPTSFTVKAE + KN PP FQKTKLMTRLTYTLDE+EGP EV +DGT+K
Sbjct: 128 PGKYNAKKFCLEPTSFTVKAESVNKNAPPDFQKTKLMTRLTYTLDEIEGPFEVSSDGTVK 187

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFSG FLVPS
Sbjct: 188 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPS 235



 Score = 25.0 bits (53), Expect(2) = 1e-81
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 237 RGSSFLDPKG 246

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>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  296 bits (758), Expect(3) = 4e-81
 Identities = 144/168 (85%), Positives = 155/168 (92%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL++SGASAEG PKRLTFDEIQSKTYMEVKG+GTANQCPTI+GG +SF +K
Sbjct: 65  LAGFALATSALVISGASAEGVPKRLTFDEIQSKTYMEVKGSGTANQCPTIEGGTESFGYK 124

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY +KK CLEPTSFTVKAEGI KN PP FQKTKLMTRLTYTLDE+EGP EV  DGT+K
Sbjct: 125 TGKYTLKKLCLEPTSFTVKAEGINKNAPPEFQKTKLMTRLTYTLDEIEGPFEVAPDGTVK 184

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSG +LVPS
Sbjct: 185 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGSYLVPS 232



 Score = 25.0 bits (53), Expect(3) = 4e-81
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 234 RGSSFLDPKG 243



 Score = 21.6 bits (44), Expect(3) = 4e-81
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 8  RGVASKCADAAK 43
          R +A KC DAAK
Sbjct: 53 RDIAQKCTDAAK 64

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>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score =  296 bits (758), Expect(2) = 4e-81
 Identities = 146/168 (86%), Positives = 154/168 (91%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL+VSGA+AEG PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSF FK
Sbjct: 68  IAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFK 127

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY  KKFCLEPTSFTVKAEG+ KN  P FQKTKLMTRLTYTLDE+EGP EV  DGT+K
Sbjct: 128 PGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVK 187

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFS  FLVPS
Sbjct: 188 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSVDFLVPS 235



 Score = 25.0 bits (53), Expect(2) = 4e-81
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 237 RGSSFLDPKG 246

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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  296 bits (757), Expect(2) = 6e-81
 Identities = 145/168 (86%), Positives = 156/168 (92%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL+VSGASAEGAPKRLTFDEIQSKTY+EVKGTGTANQCPTIDGGVDSF FK
Sbjct: 64  IAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFK 123

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY  KK CLEPTSFTVK+EG+ KN P AFQ TKLMTRLTYTLDE+EGP EV ADG++K
Sbjct: 124 PGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVK 183

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKP+SFSG FLVPS
Sbjct: 184 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPS 231



 Score = 25.0 bits (53), Expect(2) = 6e-81
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 233 RGSSFLDPKG 242

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>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  294 bits (752), Expect(2) = 2e-80
 Identities = 144/168 (85%), Positives = 154/168 (91%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL+VSGA+AEG PKRLT+DEIQSKTYMEVKGTGTANQCPTI+GGV SF FK
Sbjct: 65  IAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIEGGVGSFAFK 124

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY  KKFCLEPTSFTVKAEG+ KN  P FQKTKLMTRLTYTLDE+EGP EV  DGT+K
Sbjct: 125 PGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVK 184

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFSG FLVPS
Sbjct: 185 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPS 232



 Score = 25.0 bits (53), Expect(2) = 2e-80
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 234 RGSSFLDPKG 243

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>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score =  288 bits (736), Expect(2) = 1e-78
 Identities = 140/168 (83%), Positives = 154/168 (91%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL+VSGA AEGAPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGG ++F FK
Sbjct: 67  IAGFALATSALVVSGAGAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFK 126

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
           AGKY  KKFC EPTSFTVKA+ + KN PP FQ TKLMTRLTYTLDE+EGP EVG+DG++K
Sbjct: 127 AGKYTGKKFCFEPTSFTVKADSVSKNAPPDFQNTKLMTRLTYTLDEIEGPFEVGSDGSVK 186

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           F+E+DGIDYAAVTVQLPGGERVPFLFTVKQL A+GKPESFSG FLVPS
Sbjct: 187 FKEEDGIDYAAVTVQLPGGERVPFLFTVKQLEASGKPESFSGKFLVPS 234



 Score = 25.0 bits (53), Expect(2) = 1e-78
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 236 RGSSFLDPKG 245

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>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score =  281 bits (718), Expect(2) = 2e-76
 Identities = 136/168 (80%), Positives = 152/168 (90%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AGFALATSAL+VSGASAEGAPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGG ++F FK
Sbjct: 68  IAGFALATSALVVSGASAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFK 127

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY  KKFC EPTSFTVKA+ + KN PP FQ TKLMTRLTYTLDE+EGP EV +DG++ 
Sbjct: 128 PGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVN 187

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           F+E+DGIDYAAVTVQLPGGERVPFLFTVKQL A+GKP+SF+G FLVPS
Sbjct: 188 FKEEDGIDYAAVTVQLPGGERVPFLFTVKQLDASGKPDSFTGKFLVPS 235



 Score = 25.0 bits (53), Expect(2) = 2e-76
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 237 RGSSFLDPKG 246

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>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  280 bits (716), Expect(2) = 3e-76
 Identities = 138/168 (82%), Positives = 150/168 (89%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 224
           +AG ALATSAL+ SGA+AEG  KRLT+DEIQSKTY+EVKGTGTANQCPT++GGVDSF FK
Sbjct: 67  LAGLALATSALIASGANAEGG-KRLTYDEIQSKTYLEVKGTGTANQCPTVEGGVDSFAFK 125

Query: 225 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 404
            GKY  KKFCLEPT F VKAEGI KN  P FQ TKLMTRLTYTLDE+EGP EV +DGT+K
Sbjct: 126 PGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGPFEVSSDGTVK 185

Query: 405 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFSG FLVPS
Sbjct: 186 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPS 233



 Score = 25.0 bits (53), Expect(2) = 3e-76
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 235 RGSSFLDPKG 244

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>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score =  181 bits (460), Expect(2) = 9e-47
 Identities = 89/166 (53%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
 Frame = +3

Query: 54  FALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTID-GGVDSFPFKAG 230
           F  A +A++ + A   G+   LT+DE+Q  TY++VKGTG AN CP ++ G  D     AG
Sbjct: 32  FGQAAAAVVAASALVAGSANALTYDELQGLTYLQVKGTGIANTCPVLEKGSTDLSELSAG 91

Query: 231 KYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFE 410
            Y+++ FC+EPTSFTVK E + K     F KTKLMTRLTYTLD M G L+VG+DG+ + +
Sbjct: 92  TYKLENFCIEPTSFTVKEESVFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDGSAELK 151

Query: 411 EKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           E+DGIDYAA TVQLPGGERV FLFT+KQ    G  ++  G F+VPS
Sbjct: 152 EEDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDNIKGDFVVPS 197



 Score = 25.0 bits (53), Expect(2) = 9e-47
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 199 RGSSFLDPKG 208

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>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score =  176 bits (447), Expect(2) = 3e-45
 Identities = 89/163 (54%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
 Frame = +3

Query: 63  ATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFP-FKAGKYE 239
           A +A  ++ A   G+   LTFDEIQ  TY++VKG+G AN CP ++ G  +    KAG Y+
Sbjct: 34  AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYK 93

Query: 240 MKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKD 419
           ++ FC+EPTSFTVK E   K     F KTKLMTRLTYTLD M G  +VG+DG+ + +E D
Sbjct: 94  LENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDD 153

Query: 420 GIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
           GIDYAA TVQLPGGERV FLFT+KQ    G  +   G FLVPS
Sbjct: 154 GIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPS 196



 Score = 25.0 bits (53), Expect(2) = 3e-45
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RGSSFLDPKG
Sbjct: 198 RGSSFLDPKG 207

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>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score =  169 bits (428), Expect(2) = 2e-42
 Identities = 90/170 (52%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
 Frame = +3

Query: 45  MAGFALATSALLVSGASAEGA-PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FP 218
           +AG   A  A L+  A A  A    LT+DE+QS +Y+EVK +G A  CP +  GV S   
Sbjct: 71  LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLS 130

Query: 219 FKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGT 398
            KAGKYE+  +CLEP+SF VK    +K +   F++TKLMTRLTYTLD +   L VG DG+
Sbjct: 131 LKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGS 190

Query: 399 LKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPS 548
              +EKDG+DYAA TVQL GGERVPFLFT+K L+A G    F G F VPS
Sbjct: 191 WTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPS 240



 Score = 22.7 bits (47), Expect(2) = 2e-42
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RG++FLDPKG
Sbjct: 242 RGATFLDPKG 251

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>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score =  129 bits (325), Expect(2) = 1e-30
 Identities = 69/145 (47%), Positives = 91/145 (62%), Gaps = 10/145 (6%)
 Frame = +3

Query: 144 TYMEVKGTGTANQCPTI-DGGVDSFPFKAGK-YEMKKFCLEPTSFTVKAEGIQKNEPPAF 317
           TY +++GTG AN+CP + +    S P  + K Y +K+ CLEPT+F VK E   K +   F
Sbjct: 34  TYEQIRGTGLANKCPQLTETSRGSIPLDSSKSYVLKELCLEPTNFFVKEEPANKRQTAEF 93

Query: 318 QKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQL 497
              KL+TR T T+D++ G L+   D +L F EKDG+D+ A+TVQLPGGERVPFLFT+K L
Sbjct: 94  VAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNL 153

Query: 498 VATGKP--------ESFSGPFLVPS 548
           VA  +P          F G F VPS
Sbjct: 154 VAQTQPGLSSLNTSTDFEGTFKVPS 178



 Score = 22.7 bits (47), Expect(2) = 1e-30
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RG++FLDPKG
Sbjct: 180 RGAAFLDPKG 189

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>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score =  129 bits (325), Expect = 5e-30
 Identities = 74/173 (42%), Positives = 105/173 (60%), Gaps = 10/173 (5%)
 Frame = +3

Query: 60  LATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK- 233
           +AT   +  G  +  AP    F   Q+ TY ++ GTG AN+CPT+D     ++P  + + 
Sbjct: 7   MATLLAVCLGIFSLSAP---AFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQT 63

Query: 234 YEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEE 413
           Y + + CL+PT+F VK E   K +   F  TKL+TR T +LD+++G L+V +DG+L F E
Sbjct: 64  YRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVE 123

Query: 414 KDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPE--------SFSGPFLVPS 548
           +DGID+  VTVQ+ GGER+P LFTVK LVA+ +P          F G F VPS
Sbjct: 124 EDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPS 176

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>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score =  129 bits (325), Expect = 5e-30
 Identities = 74/173 (42%), Positives = 105/173 (60%), Gaps = 10/173 (5%)
 Frame = +3

Query: 60  LATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK- 233
           +AT   +  G  +  AP    F   Q+ TY ++ GTG AN+CPT+D     ++P  + + 
Sbjct: 7   MATLLAVCLGIFSLSAP---AFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQT 63

Query: 234 YEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEE 413
           Y + + CL+PT+F VK E   K +   F  TKL+TR T +LD+++G L+V +DG+L F E
Sbjct: 64  YRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVE 123

Query: 414 KDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPE--------SFSGPFLVPS 548
           +DGID+  VTVQ+ GGER+P LFTVK LVA+ +P          F G F VPS
Sbjct: 124 EDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPS 176

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>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score =  116 bits (290), Expect = 5e-26
 Identities = 64/147 (43%), Positives = 85/147 (57%), Gaps = 12/147 (8%)
 Frame = +3

Query: 144 TYMEVKGTGTANQCPTID----GGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPP 311
           TY ++  TG AN CP I     G ++  P    KY +  FC+EP  + VK E + K +  
Sbjct: 35  TYDDIVNTGLANVCPEISSFTRGTIEVEPNT--KYFVSDFCMEPQEYFVKEEPVNKRQKA 92

Query: 312 AFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVK 491
            + K K++TR T +L+++ G + VGADGTL F+EKDGID+  +TV LPGGE VPF FTVK
Sbjct: 93  EYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVK 152

Query: 492 QLVATGKP--------ESFSGPFLVPS 548
               T +P          F G F VPS
Sbjct: 153 NFTGTTEPGFTSINSSTDFVGDFNVPS 179

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>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score =  113 bits (282), Expect = 4e-25
 Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 10/153 (6%)
 Frame = +3

Query: 120 TFDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFPFKAGK-YEMKKFCLEPTSFTVKAEGI 293
           T  ++ + TY ++K TG AN+C ++ +    + P +AGK Y +   CLEP  F VK E  
Sbjct: 26  TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPG 85

Query: 294 QKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVP 473
            K +   F   K++TR T +LD++ G L + ADGT+ F EK GID+ A+TV LPGGE VP
Sbjct: 86  NKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVP 145

Query: 474 FLFTVKQLVA-TGKPES-------FSGPFLVPS 548
           FLFTVK LVA T +P +         G + VPS
Sbjct: 146 FLFTVKGLVASTSEPATSINTSTDLRGGYRVPS 178

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>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score =  110 bits (274), Expect(2) = 1e-24
 Identities = 62/148 (41%), Positives = 83/148 (56%), Gaps = 10/148 (6%)
 Frame = +3

Query: 135 QSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK-YEMKKFCLEPTSFTVKAEGIQKNEP 308
           Q  TY E+  TG AN+CP I      S P + G+ Y +   CLEP  + VK E + K + 
Sbjct: 32  QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQE 91

Query: 309 PAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTV 488
             +   KL+TR T +L+++ G + V  DG + F E+ GID+  VTVQLPGGE+VPF FT+
Sbjct: 92  AEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTI 151

Query: 489 KQLVATGKPE--------SFSGPFLVPS 548
           K LV   +P          F G F VPS
Sbjct: 152 KNLVGKTEPGFSSINSSIDFEGDFRVPS 179



 Score = 22.7 bits (47), Expect(2) = 1e-24
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 551 RGSSFLDPKG 580
           RG++FLDPKG
Sbjct: 181 RGATFLDPKG 190

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>PSBO_BRARA (P83504) Oxygen-evolving enhancer protein 1, chloroplast (OEE1)|
           (Fragment)
          Length = 31

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = +3

Query: 99  EGAPKRLTFDEIQSKTYMEVKGTGTANQCPT 191
           EGAPKRLT+DEIQSKTYMEVKGTGTANQCPT
Sbjct: 1   EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31

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>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)|
          Length = 1285

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 158 HLHVGLALDFVEGQPLGRPLRTCARDEEGRGC 63
           H+HVG  L   + QP G P R C +D    GC
Sbjct: 744 HVHVGGRLLAADSQPWGGPFRGCLQDLRLDGC 775

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>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)|
          Length = 1947

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 273 TVKAEGIQKNEPPAFQKTKLMTRLTYTLD 359
           TVK + +Q+  PP F+KT+ M+ LT+  D
Sbjct: 66  TVKKDVVQEMNPPKFEKTEDMSNLTFLND 94

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>H11_ARATH (P26568) Histone H1.1|
          Length = 274

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 7/154 (4%)
 Frame = +3

Query: 129 EIQSKTYMEVKGTGTANQCPTIDGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEP 308
           E++ +    ++G  TA   P  D  V+  P   G+           +  VK    +K   
Sbjct: 3   EVEIENAATIEGN-TAADAPVTDAAVEKKPAAKGR----------KTKNVKEVKEKKTVA 51

Query: 309 PAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTV-------QLPGGER 467
            A +K  + +  TY         E+  D  +  +E+ G    A+         +LP   R
Sbjct: 52  AAPKKRTVSSHPTYE--------EMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFR 103

Query: 468 VPFLFTVKQLVATGKPESFSGPFLVPSSGVPLSS 569
              L  +K+LVA+GK       F +PS+    SS
Sbjct: 104 KLLLLNLKRLVASGKLVKVKASFKLPSASAKASS 137

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>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle|
          Length = 1938

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 246 KFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTY 350
           K   + ++ TVK + IQ   PP F+K + M  +TY
Sbjct: 59  KIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTY 93

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>SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 protein (xSMC1)|
          Length = 1232

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 233 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 102
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1 protein|
           (SMC-protein)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 233 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 102
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein|
           (SMC1alpha protein) (Chromosome segregation protein
           SmcB) (Sb1.8)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 233 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 102
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like 1 protein|
           (SMC1alpha protein) (DXS423E protein) (Sb1.8)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 233 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 102
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like 1 protein|
           (SMC-protein)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 233 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 102
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,191,794
Number of Sequences: 219361
Number of extensions: 1265942
Number of successful extensions: 4763
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4755
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result