ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ESC_DROME (Q24338) Polycomb protein esc (Protein extra sex combs) 29 2.5
2LONM_YEAST (P36775) Lon protease homolog, mitochondrial precurso... 28 4.3
3FTSK_XANCP (Q8P993) DNA translocase ftsK 28 7.4
4FTSK_XANAC (Q8PL00) DNA translocase ftsK 28 7.4

>ESC_DROME (Q24338) Polycomb protein esc (Protein extra sex combs)|
          Length = 425

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 332 NGNEPEQDERRLDVQSTEYRVQTDTVPSRT-NEED*TRRLGPRRTAKTP 189
           NGNEPE+ E     +S  Y   + T  S++ +    ++R G R T   P
Sbjct: 8   NGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRRSTKSKP 56



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>LONM_YEAST (P36775) Lon protease homolog, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 1133

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 319 QNKMSEDSTYRVQSTEYRQTRYLVEPMKRIKRDGLVHDARPR 194
           QNK+S+D   ++Q  +  +  YL+E +K IKR+  + D R +
Sbjct: 486 QNKISKDVETKIQKRQ--REYYLMEQLKGIKRELGIDDGRDK 525



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>FTSK_XANCP (Q8P993) DNA translocase ftsK|
          Length = 785

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -1

Query: 283 QSTEYRQTRYLVEPMKRIKRDGLVHDARPRPL-VEPLHRPPA 161
           Q+TE++QTR + E  + +++   V  A+  P+ +EP   PPA
Sbjct: 220 QATEWQQTRVMREEREEVRKVDAVKQAKREPVKIEP---PPA 258



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>FTSK_XANAC (Q8PL00) DNA translocase ftsK|
          Length = 785

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -1

Query: 283 QSTEYRQTRYLVEPMKRIKRDGLVHDARPRPL-VEPLHRPPA 161
           Q+TE++QTR + E  + +++   V  A+  P+ +EP   PPA
Sbjct: 220 QATEWQQTRVMREEREEVRKVDAVKQAKREPVKIEP---PPA 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,836,829
Number of Sequences: 219361
Number of extensions: 414792
Number of successful extensions: 1284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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