| Clone Name | baal7p03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full insert sequence Length = 1092 Score = 500 bits (252), Expect = e-138 Identities = 426/484 (88%) Strand = Plus / Plus Query: 132 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 191 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 202 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 261 Query: 192 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 251 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 262 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 321 Query: 252 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 311 ||||||||||||||| || |||||||| ||| ||||| |||||| ||||||||||| | Sbjct: 322 agtatggagtgtatgatggtcaccacacatataatgaaacccaagataagaagggctttt 381 Query: 312 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 371 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 382 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 441 Query: 372 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 431 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 442 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 501 Query: 432 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 491 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 502 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 561 Query: 492 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 551 ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 562 cggacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 621 Query: 552 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 611 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 622 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 681 Query: 612 tctg 615 |||| Sbjct: 682 tctg 685 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 45 agcagcttggtgtccgccatttctgc 70
>dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A09, full insert sequence Length = 1077 Score = 500 bits (252), Expect = e-138 Identities = 426/484 (88%) Strand = Plus / Plus Query: 132 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 191 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 209 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 268 Query: 192 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 251 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 269 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 328 Query: 252 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 311 ||||||||||||||| || |||||||| ||| ||||| |||||| ||||||||||| | Sbjct: 329 agtatggagtgtatgatggtcaccacacatataatgaaacccaagataagaagggctttt 388 Query: 312 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 371 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 389 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 448 Query: 372 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 431 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 449 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 508 Query: 432 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 491 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 509 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 568 Query: 492 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 551 ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 569 cggacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 628 Query: 552 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 611 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 629 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 688 Query: 612 tctg 615 |||| Sbjct: 689 tctg 692 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 52 agcagcttggtgtccgccatttctgc 77
>dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H04, full insert sequence Length = 876 Score = 500 bits (252), Expect = e-138 Identities = 426/484 (88%) Strand = Plus / Plus Query: 132 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 191 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 209 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 268 Query: 192 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 251 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 269 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 328 Query: 252 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 311 ||||||||||||||| || |||||||| ||| ||||| |||||| ||||||||||| | Sbjct: 329 agtatggagtgtatgatggtcaccacacatataatgaaacccaagataagaagggctttt 388 Query: 312 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 371 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 389 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 448 Query: 372 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 431 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 449 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 508 Query: 432 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 491 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 509 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 568 Query: 492 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 551 ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 569 cggacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 628 Query: 552 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 611 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 629 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 688 Query: 612 tctg 615 |||| Sbjct: 689 tctg 692 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 52 agcagcttggtgtccgccatttctgc 77
>dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H02, full insert sequence Length = 967 Score = 490 bits (247), Expect = e-135 Identities = 403/455 (88%) Strand = Plus / Plus Query: 161 gggcccgggccgctgacggagatcgagccggacctgcaggaggaccccatcgacaagtgg 220 ||||||||||| ||||||||||||||||| |||||| | ||||||||||| || |||||| Sbjct: 147 gggcccgggccactgacggagatcgagcccgacctgaacgaggaccccattgataagtgg 206 Query: 221 cgcaccaacggcgtcagcccggaggactttgtgtatggagtgtatgacggccaccacacc 280 ||||||||||||||||||||||| ||||| | ||||||||||||||| || |||||||| Sbjct: 207 cgcaccaacggcgtcagcccggacgacttcgagtatggagtgtatgatggtcaccacaca 266 Query: 281 tatgatgaaggccaagaaaagaagggcttctgggaggatgtctccgagtggtaccaagaa 340 ||| ||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 267 tataatgaaacccaagataagaagggcttttgggaggatgtctctgagtggtaccaagaa 326 Query: 341 gctgagcctcctcagggtttccaagcgctcatctcctggtcatttccccccgcggtcatc 400 ||||| ||||||||||| |||||||| || |||||||||| ||||| || || ||||| Sbjct: 327 gctgaacctcctcagggcttccaagcactgatctcctggttgtttcctcctgcaatcatc 386 Query: 401 ctcggcatggctttcgatgtgccgggggagtacctttacattggggcggctatcttcatc 460 || |||||||| ||| |||| |||||||||||||| ||||| || || || | ||| || Sbjct: 387 cttggcatggccttcaatgttccgggggagtacctctacatcggcgcagcagtgttcgtc 446 Query: 461 gtcgtgttctgcatcatcgagatggacaagccggacaaaccgcacaactttgagccggag 520 |||||||||||| | |||||||||||||| |||||||| || |||||||||||||||||| Sbjct: 447 gtcgtgttctgcgttatcgagatggacaaaccggacaagccacacaactttgagccggag 506 Query: 521 atctacatgatggagaggtccaagcgcgacaagctcatcgcggactacaactccatggac 580 ||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| Sbjct: 507 atctacatgatggagagatcggctcgcgacaagctcatcgccgactacaacaccatggac 566 Query: 581 atctgggacttcaacgagaagtacggcgagctctg 615 ||||||||||||||||||||||||||||||||||| Sbjct: 567 atctgggacttcaacgagaagtacggcgagctctg 601 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 52 agcagcttggtgtccgccatttctgc 77
>ref|NM_190005.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 222 bits (112), Expect = 1e-54 Identities = 172/192 (89%) Strand = Plus / Plus Query: 424 gggggagtacctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagat 483 |||||||||||| ||||| || || || | ||| |||||||||||||| | |||||||| Sbjct: 1899 gggggagtacctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagat 1958 Query: 484 ggacaagccggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaa 543 |||||| |||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 1959 ggacaaaccggacaagccacacaactttgagccggagatctacatgatggagagatcggc 2018 Query: 544 gcgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagta 603 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2019 tcgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagta 2078 Query: 604 cggcgagctctg 615 |||||||||||| Sbjct: 2079 cggcgagctctg 2090 Score = 123 bits (62), Expect = 7e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 132 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 191 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 1721 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 1780 Query: 192 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccg 241 ||||| | ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1781 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccg 1830 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 299 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 358 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1833 aagaagggcttttgggaggatgtctctgagtggtaccaagaagctgaacctcctcagggc 1892 Query: 359 ttccaag 365 ||||||| Sbjct: 1893 ttccaag 1899 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 1564 agcagcttggtgtccgccatttctgc 1589
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 222 bits (112), Expect = 1e-54 Identities = 172/192 (89%) Strand = Plus / Plus Query: 424 gggggagtacctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagat 483 |||||||||||| ||||| || || || | ||| |||||||||||||| | |||||||| Sbjct: 40778525 gggggagtacctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagat 40778584 Query: 484 ggacaagccggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaa 543 |||||| |||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 40778585 ggacaaaccggacaagccacacaactttgagccggagatctacatgatggagagatcggc 40778644 Query: 544 gcgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagta 603 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 40778645 tcgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagta 40778704 Query: 604 cggcgagctctg 615 |||||||||||| Sbjct: 40778705 cggcgagctctg 40778716 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 191 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 40777696 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 40777755 Query: 192 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccgg 242 ||||| | ||||||||||| || |||||||||||||||||||||||||||| Sbjct: 40777756 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccgg 40777806 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 294 aagaaaagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctc 353 |||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 40778151 aagataagaagggcttttgggaggatgtctctgagtggtaccaagaagctgaacctcctc 40778210 Query: 354 agggtttccaag 365 |||| ||||||| Sbjct: 40778211 agggcttccaag 40778222 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 40777539 agcagcttggtgtccgccatttctgc 40777564 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 253 gtatggagtgtatgacggccaccacacctatgatgaa 289 ||||||||||||||| || |||||||| ||| ||||| Sbjct: 40777982 gtatggagtgtatgatggtcaccacacatataatgaa 40778018
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 222 bits (112), Expect = 1e-54 Identities = 172/192 (89%) Strand = Plus / Plus Query: 424 gggggagtacctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagat 483 |||||||||||| ||||| || || || | ||| |||||||||||||| | |||||||| Sbjct: 81171 gggggagtacctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagat 81230 Query: 484 ggacaagccggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaa 543 |||||| |||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 81231 ggacaaaccggacaagccacacaactttgagccggagatctacatgatggagagatcggc 81290 Query: 544 gcgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagta 603 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 81291 tcgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagta 81350 Query: 604 cggcgagctctg 615 |||||||||||| Sbjct: 81351 cggcgagctctg 81362 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 191 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 80342 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 80401 Query: 192 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccgg 242 ||||| | ||||||||||| || |||||||||||||||||||||||||||| Sbjct: 80402 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccgg 80452 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 294 aagaaaagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctc 353 |||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 80797 aagataagaagggcttttgggaggatgtctctgagtggtaccaagaagctgaacctcctc 80856 Query: 354 agggtttccaag 365 |||| ||||||| Sbjct: 80857 agggcttccaag 80868 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 agcagcttggcgtccgccatttctgc 27 |||||||||| ||||||||||||||| Sbjct: 80185 agcagcttggtgtccgccatttctgc 80210 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 253 gtatggagtgtatgacggccaccacacctatgatgaa 289 ||||||||||||||| || |||||||| ||| ||||| Sbjct: 80628 gtatggagtgtatgatggtcaccacacatataatgaa 80664
>dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B09, full insert sequence Length = 255 Score = 125 bits (63), Expect = 2e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 545 cgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtac 604 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 cgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtac 60 Query: 605 ggcgagctctg 615 ||||||||||| Sbjct: 61 ggcgagctctg 71
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 299 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 358 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 24855 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 24796 Query: 359 ttccaag 365 ||||||| Sbjct: 24795 ttccaag 24789
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 299 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 358 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 131627 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 131568 Query: 359 ttccaag 365 ||||||| Sbjct: 131567 ttccaag 131561
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 299 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 358 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 3037611 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 3037552 Query: 359 ttccaag 365 ||||||| Sbjct: 3037551 ttccaag 3037545
>gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosome 15, complete sequence Length = 131905 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ctgcagcagccactgctgctc 44 ||||||||||||||||||||| Sbjct: 18651 ctgcagcagccactgctgctc 18631
>gb|AC130203.4| Mus musculus BAC clone RP24-413E20 from chromosome 15, complete sequence Length = 182040 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ctgcagcagccactgctgctc 44 ||||||||||||||||||||| Sbjct: 174949 ctgcagcagccactgctgctc 174929
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 tcatcctcggcatggctttcg 416 ||||||||||||||||||||| Sbjct: 444468 tcatcctcggcatggctttcg 444488
>gb|AC009753.5|AC009753 Homo sapiens chromosome 15 clone RP11-416K5 map 15q21.1, complete sequence Length = 158405 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 caagaaaagaagggcttctgg 313 ||||||||||||||||||||| Sbjct: 116360 caagaaaagaagggcttctgg 116380
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 tgctcgtcctcgccgtggcgc 60 ||||||||||||||||||||| Sbjct: 39324 tgctcgtcctcgccgtggcgc 39304
>emb|BX088535.6| Zebrafish DNA sequence from clone DKEY-18F5 in linkage group 14, complete sequence Length = 197465 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 tgcatcatcgagatggacaag 490 ||||||||||||||||||||| Sbjct: 187102 tgcatcatcgagatggacaag 187082
>gb|AC113480.8| Mus musculus chromosome 13, clone RP23-309D8, complete sequence Length = 181457 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 gcagtggcagcggcagggcggtggcagtg 154 |||||||||| ||||| |||||||||||| Sbjct: 37393 gcagtggcagtggcagcgcggtggcagtg 37365
>ref|XM_515113.1| PREDICTED: Pan troglodytes similar to FLJ00017 protein (LOC458809), mRNA Length = 3629 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gaagctgagcctcctcaggg 357 |||||||||||||||||||| Sbjct: 2414 gaagctgagcctcctcaggg 2395
>gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosome 5, complete sequence Length = 145348 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 catgatggagaggtccaagc 545 |||||||||||||||||||| Sbjct: 20187 catgatggagaggtccaagc 20168
>gb|AC125043.4| Mus musculus BAC clone RP23-342M4 from chromosome 5, complete sequence Length = 199287 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 catgatggagaggtccaagc 545 |||||||||||||||||||| Sbjct: 189325 catgatggagaggtccaagc 189306
>ref|XM_533548.2| PREDICTED: Canis familiaris similar to nuclear factor, interleukin 3 regulated (LOC476347), mRNA Length = 1686 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctgctgctcgtcctcgccgt 55 |||||||||||||||||||| Sbjct: 879 ctgctgctcgtcctcgccgt 860
>emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on chromosome 22q12.3-13.1, complete sequence Length = 97585 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gaagctgagcctcctcaggg 357 |||||||||||||||||||| Sbjct: 62363 gaagctgagcctcctcaggg 62344
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gcagcggcagggcggtggca 151 |||||||||||||||||||| Sbjct: 5116728 gcagcggcagggcggtggca 5116709
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 gcatcatcgagatggacaag 490 |||||||||||||||||||| Sbjct: 2473756 gcatcatcgagatggacaag 2473775
>emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chromosome 11 Contains the 5' end of the Tcn2 gene for transcobalamin 2, two novel genes, a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the Pes1 gene for BRCT domain containing pescadillo homolog 1 (zebrafish), the Gcst gene for galactosylceramide sulfotransferase, a ubiquitin-conjugating enzyme E2L 3 (Ube2l3) pseuogene, the Sec14l4 and Sec14l2 genes for SEC14-like 4 (S. cerevisiae) and 2, the ortholog of human and rat SEC14-like 3 (S. cerevisiae) SEC14L3, a ribosomal protein L29 (Rpl29) pseudogene, a transformer 2 alpha homolog (Drosophila) (Tra2a) pseudogene and a CpG island, complete sequence Length = 201238 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 atctcctggtcatttccccc 390 |||||||||||||||||||| Sbjct: 38489 atctcctggtcatttccccc 38470
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gaccccatcgacaagtggcgcacc 226 |||||||||||| ||||||||||| Sbjct: 366643 gaccccatcgaccagtggcgcacc 366666
>gb|AF454964.1| Rattus norvegicus prostaglandin E2 receptor type 2 (Ptger-ep2) gene, complete cds Length = 15008 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 gatggacaagccggacaaac 500 |||||||||||||||||||| Sbjct: 10089 gatggacaagccggacaaac 10070
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gcggtcatcctcggcatggc 411 |||||||||||||||||||| Sbjct: 2587425 gcggtcatcctcggcatggc 2587444
>ref|XM_312919.2| Anopheles gambiae str. PEST ENSANGP00000014717 (ENSANGG00000012228), partial mRNA Length = 1644 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctgctgctcgtcctcgccgtggcg 59 ||||||||||| |||||||||||| Sbjct: 1546 ctgctgctcgtgctcgccgtggcg 1569
>gb|BC091192.1| Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, mRNA (cDNA clone IMAGE:7372074), partial cds Length = 1222 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gccatttctgcagcagccac 36 |||||||||||||||||||| Sbjct: 34 gccatttctgcagcagccac 53
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgagcctcctcagggtttcc 362 |||||||||||||||||||| Sbjct: 1409076 tgagcctcctcagggtttcc 1409095 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,922,232 Number of Sequences: 3902068 Number of extensions: 4922232 Number of successful extensions: 96967 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96534 Number of HSP's gapped (non-prelim): 426 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)