ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7o24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467124.1| Oryza sativa (japonica cultivar-group), mRNA 107 7e-21
2dbj|AK066420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 7e-21
3gb|AY108160.1| Zea mays PCO119794 mRNA sequence 88 6e-15
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 9e-08
5dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 64 9e-08
6emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 64 9e-08
7ref|XM_473410.1| Oryza sativa (japonica cultivar-group), predic... 54 8e-05
8dbj|AK061922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 8e-05
9dbj|AK103889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 8e-05
10dbj|AK101956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 8e-05
11emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4,... 42 0.32
12emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4,... 42 0.32
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.32
14gb|AF085275.1|AF085275 Hevea brasiliensis DnaJ protein mRNA, com... 42 0.32
15gb|AY500996.1| Homo sapiens angiogenic factor VG5Q gene, complet... 40 1.3
16gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, comp... 40 1.3
17emb|X69436.1|APDNAJ A.porrum dnaJ mRNA for DNA J protein (partial) 38 5.0 
>ref|XM_467124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1826

 Score =  107 bits (54), Expect = 7e-21
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaa 61
           ||||| |||||| | || |||| ||| ||||| | |||||||||||||||||| ||||||
Sbjct: 326 taccgtaaagctgccattaaaaaccaccctgataagggtggagaccctgagaagtttaaa 385

                                                          
Query: 62  gaattnncacangcttacgatgttcttaatgaccctgaaaagaggga 108
           |||||  | || |||||||| ||||||||||| ||||||||||||||
Sbjct: 386 gaattggctcaagcttacgaggttcttaatgatcctgaaaagaggga 432
to top
>dbj|AK066420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067J21, full
           insert sequence
          Length = 1824

 Score =  107 bits (54), Expect = 7e-21
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaa 61
           ||||| |||||| | || |||| ||| ||||| | |||||||||||||||||| ||||||
Sbjct: 324 taccgtaaagctgccattaaaaaccaccctgataagggtggagaccctgagaagtttaaa 383

                                                          
Query: 62  gaattnncacangcttacgatgttcttaatgaccctgaaaagaggga 108
           |||||  | || |||||||| ||||||||||| ||||||||||||||
Sbjct: 384 gaattggctcaagcttacgaggttcttaatgatcctgaaaagaggga 430
to top
>gb|AY108160.1| Zea mays PCO119794 mRNA sequence
          Length = 1849

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 8   aaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaagaattn 67
           |||||| | ||||||| ||||||||| | |||||||||||||||||| ||||||||  | 
Sbjct: 255 aaagctgccataaaaaaccatcctgataagggtggagaccctgagaagtttaaagagctg 314

                                                    
Query: 68  ncacangcttacgatgttcttaatgaccctgaaaagaggga 108
            | || ||||| |||||||||| |||||| || ||||||||
Sbjct: 315 tctcaagcttatgatgttcttagtgacccggagaagaggga 355
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 56       tttaaagaattnncacangcttacgatgttcttaatgaccctgaaaagaggga 108
                |||||||||||  | || |||||||| ||||||||||| ||||||||||||||
Sbjct: 26538736 tttaaagaattggctcaagcttacgaggttcttaatgatcctgaaaagaggga 26538788



 Score = 48.1 bits (24), Expect = 0.005
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 2        taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaa 54
                ||||| |||||| | || |||| ||| ||||| | ||||||||||||||||||
Sbjct: 26538596 taccgtaaagctgccattaaaaaccaccctgataagggtggagaccctgagaa 26538648
to top
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 56    tttaaagaattnncacangcttacgatgttcttaatgaccctgaaaagaggga 108
             |||||||||||  | || |||||||| ||||||||||| ||||||||||||||
Sbjct: 81117 tttaaagaattggctcaagcttacgaggttcttaatgatcctgaaaagaggga 81169



 Score = 48.1 bits (24), Expect = 0.005
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 2     taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaa 54
             ||||| |||||| | || |||| ||| ||||| | ||||||||||||||||||
Sbjct: 80977 taccgtaaagctgccattaaaaaccaccctgataagggtggagaccctgagaa 81029
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 56     tttaaagaattnncacangcttacgatgttcttaatgaccctgaaaagaggga 108
              |||||||||||  | || |||||||| ||||||||||| ||||||||||||||
Sbjct: 244333 tttaaagaattggctcaagcttacgaggttcttaatgatcctgaaaagaggga 244385



 Score = 48.1 bits (24), Expect = 0.005
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 2      taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaa 54
              ||||| |||||| | || |||| ||| ||||| | ||||||||||||||||||
Sbjct: 244193 taccgtaaagctgccattaaaaaccaccctgataagggtggagaccctgagaa 244245
to top
>ref|XM_473410.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2115

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                        
Query: 2    taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaa 61
            |||||||| ||| | ||||||| ||||||||||| ||| || || || || || ||||||
Sbjct: 958  taccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaa 1017

                                                        
Query: 62   gaattnncacangcttacgatgttcttaatgaccctgaaaagag 105
            |||||  |||| || || || ||||| | ||| ||||| |||||
Sbjct: 1018 gaattatcacaagcgtatgaggttctcactgatcctgagaagag 1061
to top
>dbj|AK061922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B10, full
           insert sequence
          Length = 1401

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                       
Query: 2   taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaa 61
           |||||||| ||| | ||||||| ||||||||||| ||| || || || || || ||||||
Sbjct: 34  taccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaa 93

                                                       
Query: 62  gaattnncacangcttacgatgttcttaatgaccctgaaaagag 105
           |||||  |||| || || || ||||| | ||| ||||| |||||
Sbjct: 94  gaattatcacaagcgtatgaggttctcactgatcctgagaagag 137
to top
>dbj|AK103889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150D12, full
           insert sequence
          Length = 1752

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                       
Query: 2   taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaa 61
           |||||||| ||| | ||||||| ||||||||||| ||| || || || || || ||||||
Sbjct: 215 taccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaa 274

                                                       
Query: 62  gaattnncacangcttacgatgttcttaatgaccctgaaaagag 105
           |||||  |||| || || || ||||| | ||| ||||| |||||
Sbjct: 275 gaattatcacaagcgtatgaggttctcactgatcctgagaagag 318
to top
>dbj|AK101956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075M11, full
           insert sequence
          Length = 1631

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                       
Query: 2   taccggaaagctnctataaaaanccatcctgacangggtggagaccctgagaantttaaa 61
           |||||||| ||| | ||||||| ||||||||||| ||| || || || || || ||||||
Sbjct: 212 taccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaa 271

                                                       
Query: 62  gaattnncacangcttacgatgttcttaatgaccctgaaaagag 105
           |||||  |||| || || || ||||| | ||| ||||| |||||
Sbjct: 272 gaattatcacaagcgtatgaggttctcactgatcctgagaagag 315
to top
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17,
            complete sequence
          Length = 127259

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 33/38 (86%)
 Strand = Plus / Plus

                                                  
Query: 2    taccggaaagctnctataaaaanccatcctgacanggg 39
            |||||||| ||| | ||||||| ||||||||||| |||
Sbjct: 3787 taccggaaggctgccataaaaaaccatcctgacaaggg 3824
to top
>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10,
              complete sequence
          Length = 133967

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 33/38 (86%)
 Strand = Plus / Plus

                                                    
Query: 2      taccggaaagctnctataaaaanccatcctgacanggg 39
              |||||||| ||| | ||||||| ||||||||||| |||
Sbjct: 132438 taccggaaggctgccataaaaaaccatcctgacaaggg 132475
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 33/38 (86%)
 Strand = Plus / Plus

                                                      
Query: 2        taccggaaagctnctataaaaanccatcctgacanggg 39
                |||||||| ||| | ||||||| ||||||||||| |||
Sbjct: 27479811 taccggaaggctgccataaaaaaccatcctgacaaggg 27479848
to top
>gb|AF085275.1|AF085275 Hevea brasiliensis DnaJ protein mRNA, complete cds
          Length = 1562

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 25  ccatcctgacangggtggagaccctgagaantttaaaga 63
           ||||||||||| |||||| || ||||| || ||||||||
Sbjct: 211 ccatcctgacaagggtggtgatcctgaaaagtttaaaga 249
to top
>gb|AY500996.1| Homo sapiens angiogenic factor VG5Q gene, complete cds
          Length = 40275

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgttcttaatgaccctgaaa 101
             ||||||||||||||||||||
Sbjct: 33489 tgttcttaatgaccctgaaa 33508
to top
>gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, complete sequence
          Length = 198564

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgttcttaatgaccctgaaa 101
             ||||||||||||||||||||
Sbjct: 75238 tgttcttaatgaccctgaaa 75257
to top
>emb|X69436.1|APDNAJ A.porrum dnaJ mRNA for DNA J protein (partial)
          Length = 1210

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 62/78 (79%)
 Strand = Plus / Plus

                                                                       
Query: 26  catcctgacangggtggagaccctgagaantttaaagaattnncacangcttacgatgtt 85
           |||||||| |  ||||| || || ||||| ||||| || ||  | || ||||| ||||||
Sbjct: 58  catcctgataaaggtggcgatcccgagaagtttaaggagttggctcaagcttatgatgtt 117

                             
Query: 86  cttaatgaccctgaaaag 103
           || | |||||||||||||
Sbjct: 118 ctaagtgaccctgaaaag 135


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 389,508
Number of Sequences: 3902068
Number of extensions: 389508
Number of successful extensions: 23253
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23223
Number of HSP's gapped (non-prelim): 30
length of query: 111
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 90
effective length of database: 17,151,101,840
effective search space: 1543599165600
effective search space used: 1543599165600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top