ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7o22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1912 Score = 222 bits (112), Expect = 1e-54 Identities = 250/296 (84%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 134 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 1059 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 1118 Query: 135 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 194 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 1119 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 1178 Query: 195 cagaacgctatcctggactcagacatctacctcctccacatcgaggagcgcaacttcgct 254 ||||| || ||| |||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 1179 cagaatgccatcttggattcagacatctacctgctccacattgaggagcgcaatttcgct 1238 Query: 255 gcggcgggcgtcgaaaactggcagaaagccgtgtacgtgccgacgtcgtcggacaacatg 314 ||| || | || |||||||||||||| || ||||| || || || ||||||||| Sbjct: 1239 acggttggtcttgataactggcagaaagcttgctatgtgcccacatcatctgacaacatg 1298 Query: 315 gtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggctgggc 370 | ||| ||||||| ||||||||||||||| |||||||| |||| | |||||||| Sbjct: 1299 atcatcaccttcagaaactggttcagaaagtactgcaagcatcagattggctgggc 1354 Score = 143 bits (72), Expect = 8e-31 Identities = 150/176 (85%) Strand = Plus / Plus Query: 415 agctcatggagaggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctga 474 ||||| |||| ||||| |||||||||||| |||||||| |||||||||| || |||| Sbjct: 1399 agctcttggacaggtattggtcgcacgtcatgcagtgcacgagctgcagcggtgcactga 1458 Query: 475 agaccatgaaagcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttcc 534 ||| ||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||| Sbjct: 1459 agaagatgaaggcgctggaggtcgccctgcaggtggcgtcggtcgccgtcgtcgggttcc 1518 Query: 535 ttgcggtcgccaaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 | || |||||||||||||| | || |||||||| ||||||||| ||||||||||| Sbjct: 1519 tcgccgtcgccaaggggacggtggtcacgtcggttgtgcagagatccgccgtcgtg 1574
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 170 bits (86), Expect = 3e-39 Identities = 146/166 (87%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 134 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 33336148 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 33336207 Query: 135 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 194 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 33336208 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 33336267 Query: 195 cagaacgctatcctggactcagacatctacctcctccacatcgagg 240 ||||| || ||| |||| |||||||||||||| |||||||| |||| Sbjct: 33336268 cagaatgccatcttggattcagacatctacctgctccacattgagg 33336313 Score = 137 bits (69), Expect = 5e-29 Identities = 141/165 (85%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 ||||| |||||||||||| |||||||| |||||||||| || ||||||| ||||| Sbjct: 33336722 aggtattggtcgcacgtcatgcagtgcacgagctgcagcggtgcactgaagaagatgaag 33336781 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || |||||||| ||||| || |||||| Sbjct: 33336782 gcgctggaggtcgccctgcaggtggcgtcggtcgccgtcgtcgggttcctcgccgtcgcc 33336841 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || |||||||| ||||||||| ||||||||||| Sbjct: 33336842 aaggggacggtggtcacgtcggttgtgcagagatccgccgtcgtg 33336886 Score = 101 bits (51), Expect = 3e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||| ||||||| ||| |||||||| |||||||||| | || ||||||| ||||| Sbjct: 33349571 aggtacaggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagaagatgaag 33349630 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || ||||||| ||||| || |||||| Sbjct: 33349631 gcgctggaggtcgccctgcaggtggcgtcggtcgccatcgtcggattcctcgccgtcgcc 33349690 Query: 546 aagggga 552 ||||||| Sbjct: 33349691 aagggga 33349697 Score = 97.6 bits (49), Expect = 4e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||||||||||| ||| |||||||| |||||||||| | || |||||| |||| | Sbjct: 33357770 aggtactggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagtggatgaga 33357829 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 || |||||||| ||||||||||| || ||||| || |||||||| ||||| || | || | Sbjct: 33357830 gctctggaggtcgccctgcaggtggcttcggtcgccgtcgtcgggttcctcgccgccggc 33357889 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || ||||||| || |||||||||||||||||| Sbjct: 33357890 aaggggacggtggtcacgtcgggtgttcagagagccgccgtcgtg 33357934 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||||| ||| ||||||| ||||||||||||||| |||| ||| |||| ||||| Sbjct: 33349328 gacaacatggtcatcaccttcagaaactggttcagaaagtactgtaagcatcagatcggc 33349387 Query: 366 tgggc 370 ||||| Sbjct: 33349388 tgggc 33349392 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||| | ||| ||||||| ||||||||||||||| |||||||| |||||| ||| Sbjct: 33343101 gacaacatgatcatcaccttcagaaactggttcagaaagtactgcaagcatcaggttggc 33343160 Query: 366 tgggc 370 ||||| Sbjct: 33343161 tgggc 33343165 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 80 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 139 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 33348517 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 33348576 Query: 140 gaa 142 ||| Sbjct: 33348577 gaa 33348579 Score = 58.0 bits (29), Expect = 3e-05 Identities = 135/168 (80%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 ||||||||||| || ||| |||||||| ||||||||| | || |||||| |||| Sbjct: 33343332 aggtactggtcacatgtcatgcagtgcaccagctgcagcgctgcactgaagtggatgagg 33343391 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||| ||||||| || |||||||| |||||||| || |||||||| ||||| || | || | Sbjct: 33343392 gcgatggaggtcgcactgcaggtggcgtcggtcgccgtcgtcgggttcctcgccgccggc 33343451 Query: 546 aaggggac-ac--tagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| || | || ||||||| || |||||||||||||||||| Sbjct: 33343452 aaggggacgacggtggtcacgtcggcggttcagagagccgccgtcgtg 33343499 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 270 aactggcagaaagccgtgtacgtgccgacgtcgtcggacaacatggtgatcgccttcagg 329 |||||||||||||| || ||||| || || || ||||||||| | ||| ||||||| Sbjct: 33336428 aactggcagaaagcttgctatgtgcccacatcatctgacaacatgatcatcaccttcaga 33336487 Query: 330 aactggttcagaaagcactgcaagagtcaggtcggctgggc 370 ||||||||||||||| |||||||| |||| | |||||||| Sbjct: 33336488 aactggttcagaaagtactgcaagcatcagattggctgggc 33336528 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 129 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 33342781 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 33342835 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 288 tacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcagaaagcac 347 |||||||| || || || |||||| || | ||||||||||| |||||||||| ||| || Sbjct: 33357464 tacgtgcccacatcatctgacaacttgatcatcgccttcagaaactggttcaagaagtac 33357523 Query: 348 tgcaagagtcaggtcggctgg 368 || || | |||||| |||||| Sbjct: 33357524 tgtaacaatcaggttggctgg 33357544 Score = 40.1 bits (20), Expect = 8.1 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 81 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 131 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 33357137 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 33357187 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 399 actccaaccaaagacaagctcatggagaggta 430 ||||| |||||||| |||||||||||||||| Sbjct: 33343194 actcctaccaaagatcagctcatggagaggta 33343225
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 170 bits (86), Expect = 3e-39 Identities = 146/166 (87%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 134 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 92664 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 92723 Query: 135 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 194 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 92724 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 92783 Query: 195 cagaacgctatcctggactcagacatctacctcctccacatcgagg 240 ||||| || ||| |||| |||||||||||||| |||||||| |||| Sbjct: 92784 cagaatgccatcttggattcagacatctacctgctccacattgagg 92829 Score = 137 bits (69), Expect = 5e-29 Identities = 141/165 (85%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 ||||| |||||||||||| |||||||| |||||||||| || ||||||| ||||| Sbjct: 93238 aggtattggtcgcacgtcatgcagtgcacgagctgcagcggtgcactgaagaagatgaag 93297 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || |||||||| ||||| || |||||| Sbjct: 93298 gcgctggaggtcgccctgcaggtggcgtcggtcgccgtcgtcgggttcctcgccgtcgcc 93357 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || |||||||| ||||||||| ||||||||||| Sbjct: 93358 aaggggacggtggtcacgtcggttgtgcagagatccgccgtcgtg 93402 Score = 101 bits (51), Expect = 3e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||| ||||||| ||| |||||||| |||||||||| | || ||||||| ||||| Sbjct: 106087 aggtacaggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagaagatgaag 106146 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || ||||||| ||||| || |||||| Sbjct: 106147 gcgctggaggtcgccctgcaggtggcgtcggtcgccatcgtcggattcctcgccgtcgcc 106206 Query: 546 aagggga 552 ||||||| Sbjct: 106207 aagggga 106213 Score = 97.6 bits (49), Expect = 4e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||||||||||| ||| |||||||| |||||||||| | || |||||| |||| | Sbjct: 114286 aggtactggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagtggatgaga 114345 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 || |||||||| ||||||||||| || ||||| || |||||||| ||||| || | || | Sbjct: 114346 gctctggaggtcgccctgcaggtggcttcggtcgccgtcgtcgggttcctcgccgccggc 114405 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || ||||||| || |||||||||||||||||| Sbjct: 114406 aaggggacggtggtcacgtcgggtgttcagagagccgccgtcgtg 114450 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||||| ||| ||||||| ||||||||||||||| |||| ||| |||| ||||| Sbjct: 105844 gacaacatggtcatcaccttcagaaactggttcagaaagtactgtaagcatcagatcggc 105903 Query: 366 tgggc 370 ||||| Sbjct: 105904 tgggc 105908 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||| | ||| ||||||| ||||||||||||||| |||||||| |||||| ||| Sbjct: 99617 gacaacatgatcatcaccttcagaaactggttcagaaagtactgcaagcatcaggttggc 99676 Query: 366 tgggc 370 ||||| Sbjct: 99677 tgggc 99681 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 80 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 139 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 105033 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 105092 Query: 140 gaa 142 ||| Sbjct: 105093 gaa 105095 Score = 58.0 bits (29), Expect = 3e-05 Identities = 135/168 (80%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 ||||||||||| || ||| |||||||| ||||||||| | || |||||| |||| Sbjct: 99848 aggtactggtcacatgtcatgcagtgcaccagctgcagcgctgcactgaagtggatgagg 99907 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||| ||||||| || |||||||| |||||||| || |||||||| ||||| || | || | Sbjct: 99908 gcgatggaggtcgcactgcaggtggcgtcggtcgccgtcgtcgggttcctcgccgccggc 99967 Query: 546 aaggggac-ac--tagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| || | || ||||||| || |||||||||||||||||| Sbjct: 99968 aaggggacgacggtggtcacgtcggcggttcagagagccgccgtcgtg 100015 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 270 aactggcagaaagccgtgtacgtgccgacgtcgtcggacaacatggtgatcgccttcagg 329 |||||||||||||| || ||||| || || || ||||||||| | ||| ||||||| Sbjct: 92944 aactggcagaaagcttgctatgtgcccacatcatctgacaacatgatcatcaccttcaga 93003 Query: 330 aactggttcagaaagcactgcaagagtcaggtcggctgggc 370 ||||||||||||||| |||||||| |||| | |||||||| Sbjct: 93004 aactggttcagaaagtactgcaagcatcagattggctgggc 93044 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 129 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 99297 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 99351 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 288 tacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcagaaagcac 347 |||||||| || || || |||||| || | ||||||||||| |||||||||| ||| || Sbjct: 113980 tacgtgcccacatcatctgacaacttgatcatcgccttcagaaactggttcaagaagtac 114039 Query: 348 tgcaagagtcaggtcggctgg 368 || || | |||||| |||||| Sbjct: 114040 tgtaacaatcaggttggctgg 114060 Score = 40.1 bits (20), Expect = 8.1 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 81 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 131 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 113653 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 113703 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 399 actccaaccaaagacaagctcatggagaggta 430 ||||| |||||||| |||||||||||||||| Sbjct: 99710 actcctaccaaagatcagctcatggagaggta 99741
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 170 bits (86), Expect = 3e-39 Identities = 146/166 (87%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 134 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 33426658 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 33426717 Query: 135 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 194 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 33426718 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 33426777 Query: 195 cagaacgctatcctggactcagacatctacctcctccacatcgagg 240 ||||| || ||| |||| |||||||||||||| |||||||| |||| Sbjct: 33426778 cagaatgccatcttggattcagacatctacctgctccacattgagg 33426823 Score = 137 bits (69), Expect = 5e-29 Identities = 141/165 (85%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 ||||| |||||||||||| |||||||| |||||||||| || ||||||| ||||| Sbjct: 33427232 aggtattggtcgcacgtcatgcagtgcacgagctgcagcggtgcactgaagaagatgaag 33427291 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || |||||||| ||||| || |||||| Sbjct: 33427292 gcgctggaggtcgccctgcaggtggcgtcggtcgccgtcgtcgggttcctcgccgtcgcc 33427351 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || |||||||| ||||||||| ||||||||||| Sbjct: 33427352 aaggggacggtggtcacgtcggttgtgcagagatccgccgtcgtg 33427396 Score = 101 bits (51), Expect = 3e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||| ||||||| ||| |||||||| |||||||||| | || ||||||| ||||| Sbjct: 33440081 aggtacaggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagaagatgaag 33440140 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || ||||||| ||||| || |||||| Sbjct: 33440141 gcgctggaggtcgccctgcaggtggcgtcggtcgccatcgtcggattcctcgccgtcgcc 33440200 Query: 546 aagggga 552 ||||||| Sbjct: 33440201 aagggga 33440207 Score = 97.6 bits (49), Expect = 4e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||||||||||| ||| |||||||| |||||||||| | || |||||| |||| | Sbjct: 33448280 aggtactggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagtggatgaga 33448339 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 || |||||||| ||||||||||| || ||||| || |||||||| ||||| || | || | Sbjct: 33448340 gctctggaggtcgccctgcaggtggcttcggtcgccgtcgtcgggttcctcgccgccggc 33448399 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || ||||||| || |||||||||||||||||| Sbjct: 33448400 aaggggacggtggtcacgtcgggtgttcagagagccgccgtcgtg 33448444 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||||| ||| ||||||| ||||||||||||||| |||| ||| |||| ||||| Sbjct: 33439838 gacaacatggtcatcaccttcagaaactggttcagaaagtactgtaagcatcagatcggc 33439897 Query: 366 tgggc 370 ||||| Sbjct: 33439898 tgggc 33439902 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||| | ||| ||||||| ||||||||||||||| |||||||| |||||| ||| Sbjct: 33433611 gacaacatgatcatcaccttcagaaactggttcagaaagtactgcaagcatcaggttggc 33433670 Query: 366 tgggc 370 ||||| Sbjct: 33433671 tgggc 33433675 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 80 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 139 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 33439027 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 33439086 Query: 140 gaa 142 ||| Sbjct: 33439087 gaa 33439089 Score = 58.0 bits (29), Expect = 3e-05 Identities = 135/168 (80%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 ||||||||||| || ||| |||||||| ||||||||| | || |||||| |||| Sbjct: 33433842 aggtactggtcacatgtcatgcagtgcaccagctgcagcgctgcactgaagtggatgagg 33433901 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||| ||||||| || |||||||| |||||||| || |||||||| ||||| || | || | Sbjct: 33433902 gcgatggaggtcgcactgcaggtggcgtcggtcgccgtcgtcgggttcctcgccgccggc 33433961 Query: 546 aaggggac-ac--tagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| || | || ||||||| || |||||||||||||||||| Sbjct: 33433962 aaggggacgacggtggtcacgtcggcggttcagagagccgccgtcgtg 33434009 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 270 aactggcagaaagccgtgtacgtgccgacgtcgtcggacaacatggtgatcgccttcagg 329 |||||||||||||| || ||||| || || || ||||||||| | ||| ||||||| Sbjct: 33426938 aactggcagaaagcttgctatgtgcccacatcatctgacaacatgatcatcaccttcaga 33426997 Query: 330 aactggttcagaaagcactgcaagagtcaggtcggctgggc 370 ||||||||||||||| |||||||| |||| | |||||||| Sbjct: 33426998 aactggttcagaaagtactgcaagcatcagattggctgggc 33427038 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 129 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 33433291 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 33433345 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 288 tacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcagaaagcac 347 |||||||| || || || |||||| || | ||||||||||| |||||||||| ||| || Sbjct: 33447974 tacgtgcccacatcatctgacaacttgatcatcgccttcagaaactggttcaagaagtac 33448033 Query: 348 tgcaagagtcaggtcggctgg 368 || || | |||||| |||||| Sbjct: 33448034 tgtaacaatcaggttggctgg 33448054 Score = 40.1 bits (20), Expect = 8.1 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 81 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 131 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 33447647 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 33447697 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 399 actccaaccaaagacaagctcatggagaggta 430 ||||| |||||||| |||||||||||||||| Sbjct: 33433704 actcctaccaaagatcagctcatggagaggta 33433735
>gb|AY109924.1| Zea mays CL64795_1 mRNA sequence Length = 748 Score = 147 bits (74), Expect = 5e-32 Identities = 128/146 (87%) Strand = Plus / Plus Query: 405 accaaagacaagctcatggagaggtactggtcgcacgtcgcgcagtgcaggagctgcagc 464 ||||| ||| |||||||||||||||| ||||||||||| | ||||||||||||||||| | Sbjct: 259 accaaggaccagctcatggagaggtattggtcgcacgtggtgcagtgcaggagctgcaac 318 Query: 465 acggcgctgaagaccatgaaagcgctggaggttgccctgcaggtcgcgtcggtggcggtc 524 ||||||| ||||||||||| ||||| |||| |||||||||||| || ||||| || ||| Sbjct: 319 gcggcgctcaagaccatgaaggcgctcgaggctgccctgcaggtggcctcggtcgccgtc 378 Query: 525 gtcggtttccttgcggtcgccaaggg 550 ||||| |||||||| ||||| ||||| Sbjct: 379 gtcgggttccttgccgtcgctaaggg 404 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Plus Query: 183 taccacatcggccagaacgctatcctggactcagacatctacctcctccacatcgaggag 242 |||||| ||||||||||| ||| |||| |||||||| | |||||||||| | |||||| Sbjct: 37 taccacgtcggccagaaccttatattggattcagacattttcctcctccacgttgaggag 96 Query: 243 cgcaacttcgctgcggcgggcgtcgaaaactggcagaaagccgtgtacgtgccgacgtcg 302 || || || |||||||| || | || |||||||||| ||| |||||||||||||||| Sbjct: 97 cgtaaatttgctgcggcagggctggataactggcagagagcttggtacgtgccgacgtcg 156 Query: 303 tcggacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtc 362 |||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 157 tcggacgccatggtggtcgccttcaggaactggttcagaaaattctgcaagaaccaggtc 216 Query: 363 ggctgggc 370 |||||||| Sbjct: 217 ggctgggc 224
>ref|XM_470017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1668 Score = 115 bits (58), Expect = 2e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 399 actccaaccaaagacaagctcatggagaggtactggtcgcacgtcgcgcagtgcaggagc 458 ||||| |||||||| || || ||||||||||| ||||||| ||| |||||||| |||| Sbjct: 1381 actcctaccaaagatcaggtcttggagaggtacaggtcgcatgtcatgcagtgcacgagc 1440 Query: 459 tgcagcacggcgctgaagaccatgaaagcgctggaggttgccctgcaggtcgcgtcggtg 518 |||||| | || ||||||| ||||| ||||||||||| ||||||||||| |||||||| Sbjct: 1441 tgcagcgctgcactgaagaagatgaaggcgctggaggtcgccctgcaggtggcgtcggtc 1500 Query: 519 gcggtcgtcggtttccttgcggtcgccaagggga 552 || ||||||| ||||| || ||||||||||||| Sbjct: 1501 gccatcgtcggattcctcgccgtcgccaagggga 1534 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/150 (82%) Strand = Plus / Plus Query: 221 ctacctcctccacatcgaggagcgcaacttcgctgcggcgggcgtcgaaaactggcagaa 280 |||||||||||| || ||||||||||||||||| ||| ||| | || |||||||| || Sbjct: 1203 ctacctcctccatattgaggagcgcaacttcgccacggttggccttgataactggcacaa 1262 Query: 281 agccgtgtacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcag 340 ||| || ||||| || || || ||||||||||| ||| ||||||| ||||||||||| Sbjct: 1263 agcttgttatgtgcccacatcatctgacaacatggtcatcaccttcagaaactggttcag 1322 Query: 341 aaagcactgcaagagtcaggtcggctgggc 370 |||| |||| ||| |||| |||||||||| Sbjct: 1323 aaagtactgtaagcatcagatcggctgggc 1352 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 80 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 139 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 1062 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 1121 Query: 140 gaa 142 ||| Sbjct: 1122 gaa 1124
>ref|XM_470014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1659 Score = 115 bits (58), Expect = 2e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 399 actccaaccaaagacaagctcatggagaggtactggtcgcacgtcgcgcagtgcaggagc 458 ||||| |||||||| || || ||||||||||| ||||||| ||| |||||||| |||| Sbjct: 1372 actcctaccaaagatcaggtcttggagaggtacaggtcgcatgtcatgcagtgcacgagc 1431 Query: 459 tgcagcacggcgctgaagaccatgaaagcgctggaggttgccctgcaggtcgcgtcggtg 518 |||||| | || ||||||| ||||| ||||||||||| ||||||||||| |||||||| Sbjct: 1432 tgcagcgctgcactgaagaagatgaaggcgctggaggtcgccctgcaggtggcgtcggtc 1491 Query: 519 gcggtcgtcggtttccttgcggtcgccaagggga 552 || ||||||| ||||| || ||||||||||||| Sbjct: 1492 gccatcgtcggattcctcgccgtcgccaagggga 1525 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/150 (82%) Strand = Plus / Plus Query: 221 ctacctcctccacatcgaggagcgcaacttcgctgcggcgggcgtcgaaaactggcagaa 280 |||||||||||| || ||||||||||||||||| ||| ||| | || |||||||| || Sbjct: 1194 ctacctcctccatattgaggagcgcaacttcgccacggttggccttgataactggcacaa 1253 Query: 281 agccgtgtacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcag 340 ||| || ||||| || || || ||||||||||| ||| ||||||| ||||||||||| Sbjct: 1254 agcttgttatgtgcccacatcatctgacaacatggtcatcaccttcagaaactggttcag 1313 Query: 341 aaagcactgcaagagtcaggtcggctgggc 370 |||| |||| ||| |||| |||||||||| Sbjct: 1314 aaagtactgtaagcatcagatcggctgggc 1343 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 80 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 139 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 1053 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 1112 Query: 140 gaa 142 ||| Sbjct: 1113 gaa 1115
>ref|XM_470018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 103 bits (52), Expect = 6e-19 Identities = 139/168 (82%) Strand = Plus / Plus Query: 423 gagaggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatg 482 ||||||||||||||||| ||| |||||||| |||||||||| | || |||||| ||| Sbjct: 1315 gagaggtactggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagtggatg 1374 Query: 483 aaagcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtc 542 | ||| |||||||| ||||||||||| || ||||| || |||||||| ||||| || | | Sbjct: 1375 agagctctggaggtcgccctgcaggtggcttcggtcgccgtcgtcgggttcctcgccgcc 1434 Query: 543 gccaaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 | ||||||||| | || ||||||| || |||||||||||||||||| Sbjct: 1435 ggcaaggggacggtggtcacgtcgggtgttcagagagccgccgtcgtg 1482 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 288 tacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcagaaagcac 347 |||||||| || || || |||||| || | ||||||||||| |||||||||| ||| || Sbjct: 1180 tacgtgcccacatcatctgacaacttgatcatcgccttcagaaactggttcaagaagtac 1239 Query: 348 tgcaagagtcaggtcggctgg 368 || || | |||||| |||||| Sbjct: 1240 tgtaacaatcaggttggctgg 1260 Score = 40.1 bits (20), Expect = 8.1 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 81 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 131 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 973 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 1023
>ref|XM_470015.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1566 Score = 103 bits (52), Expect = 6e-19 Identities = 139/168 (82%) Strand = Plus / Plus Query: 423 gagaggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatg 482 ||||||||||||||||| ||| |||||||| |||||||||| | || |||||| ||| Sbjct: 1303 gagaggtactggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagtggatg 1362 Query: 483 aaagcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtc 542 | ||| |||||||| ||||||||||| || ||||| || |||||||| ||||| || | | Sbjct: 1363 agagctctggaggtcgccctgcaggtggcttcggtcgccgtcgtcgggttcctcgccgcc 1422 Query: 543 gccaaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 | ||||||||| | || ||||||| || |||||||||||||||||| Sbjct: 1423 ggcaaggggacggtggtcacgtcgggtgttcagagagccgccgtcgtg 1470 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 288 tacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcagaaagcac 347 |||||||| || || || |||||| || | ||||||||||| |||||||||| ||| || Sbjct: 1168 tacgtgcccacatcatctgacaacttgatcatcgccttcagaaactggttcaagaagtac 1227 Query: 348 tgcaagagtcaggtcggctgg 368 || || | |||||| |||||| Sbjct: 1228 tgtaacaatcaggttggctgg 1248 Score = 40.1 bits (20), Expect = 8.1 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 81 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 131 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 961 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 1011
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 101 bits (51), Expect = 3e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||| ||||||| ||| |||||||| |||||||||| | || ||||||| ||||| Sbjct: 148540 aggtacaggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagaagatgaag 148481 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 ||||||||||| ||||||||||| |||||||| || ||||||| ||||| || |||||| Sbjct: 148480 gcgctggaggtcgccctgcaggtggcgtcggtcgccatcgtcggattcctcgccgtcgcc 148421 Query: 546 aagggga 552 ||||||| Sbjct: 148420 aagggga 148414 Score = 97.6 bits (49), Expect = 4e-17 Identities = 136/165 (82%) Strand = Plus / Minus Query: 426 aggtactggtcgcacgtcgcgcagtgcaggagctgcagcacggcgctgaagaccatgaaa 485 |||||||||||||| ||| |||||||| |||||||||| | || |||||| |||| | Sbjct: 140341 aggtactggtcgcatgtcatgcagtgcacgagctgcagcgctgcactgaagtggatgaga 140282 Query: 486 gcgctggaggttgccctgcaggtcgcgtcggtggcggtcgtcggtttccttgcggtcgcc 545 || |||||||| ||||||||||| || ||||| || |||||||| ||||| || | || | Sbjct: 140281 gctctggaggtcgccctgcaggtggcttcggtcgccgtcgtcgggttcctcgccgccggc 140222 Query: 546 aaggggacactagtgacgtcggtcgtgcagagagccgccgtcgtg 590 |||||||| | || ||||||| || |||||||||||||||||| Sbjct: 140221 aaggggacggtggtcacgtcgggtgttcagagagccgccgtcgtg 140177 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 306 gacaacatggtgatcgccttcaggaactggttcagaaagcactgcaagagtcaggtcggc 365 ||||||||||| ||| ||||||| ||||||||||||||| |||| ||| |||| ||||| Sbjct: 148783 gacaacatggtcatcaccttcagaaactggttcagaaagtactgtaagcatcagatcggc 148724 Query: 366 tgggc 370 ||||| Sbjct: 148723 tgggc 148719 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 80 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 139 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 149594 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 149535 Query: 140 gaa 142 ||| Sbjct: 149534 gaa 149532 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Minus Query: 288 tacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcagaaagcac 347 |||||||| || || || |||||| || | ||||||||||| |||||||||| ||| || Sbjct: 140647 tacgtgcccacatcatctgacaacttgatcatcgccttcagaaactggttcaagaagtac 140588 Query: 348 tgcaagagtcaggtcggctgg 368 || || | |||||| |||||| Sbjct: 140587 tgtaacaatcaggttggctgg 140567 Score = 40.1 bits (20), Expect = 8.1 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 81 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 131 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 140974 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 140924
>ref|XM_470013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 87.7 bits (44), Expect = 4e-14 Identities = 159/195 (81%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 399 actccaaccaaagacaagctcatggagaggtactggtcgcacgtcgcgcagtgcaggagc 458 ||||| |||||||| |||||||||||||||||||||| || ||| |||||||| ||| Sbjct: 1294 actcctaccaaagatcagctcatggagaggtactggtcacatgtcatgcagtgcaccagc 1353 Query: 459 tgcagcacggcgctgaagaccatgaaagcgctggaggttgccctgcaggtcgcgtcggtg 518 |||||| | || |||||| |||| ||| ||||||| || |||||||| |||||||| Sbjct: 1354 tgcagcgctgcactgaagtggatgagggcgatggaggtcgcactgcaggtggcgtcggtc 1413 Query: 519 gcggtcgtcggtttccttgcggtcgccaaggggac-ac--tagtgacgtcggtcgtgcag 575 || |||||||| ||||| || | || ||||||||| || | || ||||||| || ||| Sbjct: 1414 gccgtcgtcgggttcctcgccgccggcaaggggacgacggtggtcacgtcggcggttcag 1473 Query: 576 agagccgccgtcgtg 590 ||||||||||||||| Sbjct: 1474 agagccgccgtcgtg 1488 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 222 tacctcctccacatcgaggagcgcaacttcgctgcggcgggcgtcgaaaactggcagaaa 281 ||||||||||| |||||||||||||| ||||| |||| ||||| || || ||||||||| Sbjct: 1117 tacctcctccatatcgaggagcgcaatttcgcggcggttggcgttgataaatggcagaaa 1176 Query: 282 gccgtgtacgtgccgacgtcgtcggacaacatggtgatcgccttcaggaactggttcaga 341 || || || || || | || ||||||||| | ||| ||||||| |||||||||||| Sbjct: 1177 gcttgctatgttcccactttatctgacaacatgatcatcaccttcagaaactggttcaga 1236 Query: 342 aagcactgcaagagtcaggtcggctgggc 370 ||| |||||||| |||||| |||||||| Sbjct: 1237 aagtactgcaagcatcaggttggctgggc 1265 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 75 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 129 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 970 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 1024
>gb|AC163355.2| Mus musculus BAC clone RP23-11P15 from chromosome 16, complete sequence Length = 225547 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 98 ggtgtctccggggaagagcagggtga 123 |||||||||| ||||||||||||||| Sbjct: 112924 ggtgtctccgaggaagagcagggtga 112899
>gb|AC025775.6| Homo sapiens chromosome 5 clone CTD-2299B9, complete sequence Length = 95782 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cagacatctacctcctccacat 235 |||||||||||||||||||||| Sbjct: 21983 cagacatctacctcctccacat 21962
>emb|BX950251.1| Gallus gallus finished cDNA, clone ChEST706m10 Length = 1244 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 gcgcagtgcaggagctgcagcacggc 469 ||||||||| |||||||||||||||| Sbjct: 102 gcgcagtgctggagctgcagcacggc 77
>gb|AC026709.7| Homo sapiens chromosome 5 clone CTD-2084I18, complete sequence Length = 139402 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 cagacatctacctcctccacat 235 |||||||||||||||||||||| Sbjct: 4580 cagacatctacctcctccacat 4601
>gb|AC007865.8| Trypanosoma brucei chromosome 2 clone RPCI93-30M24, complete sequence Length = 148533 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 ctggtcgcacgtcgcgcagtg 451 ||||||||||||||||||||| Sbjct: 31152 ctggtcgcacgtcgcgcagtg 31132
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 ctggtcgcacgtcgcgcagtg 451 ||||||||||||||||||||| Sbjct: 880090 ctggtcgcacgtcgcgcagtg 880110
>ref|XM_946581.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.4980) partial mRNA Length = 840 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 ctggtcgcacgtcgcgcagtg 451 ||||||||||||||||||||| Sbjct: 298 ctggtcgcacgtcgcgcagtg 278
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 agctgcagcacggcgctgaag 476 ||||||||||||||||||||| Sbjct: 1957798 agctgcagcacggcgctgaag 1957778
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 aacatcggcgtctggctcgacaaggtcat 169 ||||||||||| |||||||||||| |||| Sbjct: 1641026 aacatcggcgtgtggctcgacaagttcat 1641054
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 tggactcagacatctacctcc 228 ||||||||||||||||||||| Sbjct: 166293 tggactcagacatctacctcc 166273
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 gctggaggttgccctgcaggt 508 ||||||||||||||||||||| Sbjct: 560905 gctggaggttgccctgcaggt 560925
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 217611 ccaaccaaagaaaagctcatggag 217634
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 249638 ccaaccaaagaaaagctcatggag 249661
>ref|XM_866685.1| PREDICTED: Bos taurus similar to programmed cell death 4 (LOC615005), mRNA Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 acatctacctcctccacatc 236 |||||||||||||||||||| Sbjct: 287 acatctacctcctccacatc 268
>gb|AE006492.1| Streptococcus pyogenes M1 GAS, section 21 of 167 of the complete genome Length = 10643 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 239 ccaaccaaagaaaagctcatggag 262
>ref|XM_869345.1| PREDICTED: Bos taurus similar to Membrane-associated RING finger protein 4 (Membrane-associated RING-CH protein IV) (MARCH-IV) (LOC617145), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 gcgtcccggtgtctccgggg 110 |||||||||||||||||||| Sbjct: 746 gcgtcccggtgtctccgggg 727
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 217437 ccaaccaaagaaaagctcatggag 217460
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 225170 ccaaccaaagaaaagctcatggag 225193
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 221826 ccaaccaaagaaaagctcatggag 221849
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 224221 ccaaccaaagaaaagctcatggag 224244
>ref|XM_389543.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09367.1) partial mRNA Length = 1656 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cggcgtctggctcgacaagg 165 |||||||||||||||||||| Sbjct: 282 cggcgtctggctcgacaagg 301
>ref|XM_846527.1| PREDICTED: Canis familiaris hypothetical protein LOC609286 (LOC609286), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tcagaaagcactgcaagagt 356 |||||||||||||||||||| Sbjct: 210 tcagaaagcactgcaagagt 229
>ref|XM_773424.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_554_27067_28653) partial mRNA Length = 1587 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggaactggttcagaaagca 346 |||||||||||||||||||| Sbjct: 23 aggaactggttcagaaagca 42
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 221134 ccaaccaaagaaaagctcatggag 221157
>emb|X60325.1|GLRPOA3 G.lamblia rpoA3 gene for subunit A of DNA dependent RNA polymerase III Length = 8333 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggaactggttcagaaagca 346 |||||||||||||||||||| Sbjct: 1461 aggaactggttcagaaagca 1480
>emb|X05630.1|RCPETG Rhodopseudomonas capsulata petABC operon Length = 4007 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 gtcggtttccttgcggtcgc 544 |||||||||||||||||||| Sbjct: 2971 gtcggtttccttgcggtcgc 2952
>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence Length = 173513 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ccagagactccaaccaaaga 412 |||||||||||||||||||| Sbjct: 23566 ccagagactccaaccaaaga 23547
>gb|AE009971.1| Streptococcus pyogenes strain MGAS8232, section 19 of 173 of the complete genome Length = 10826 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 8684 ccaaccaaagaaaagctcatggag 8707
>gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosome 6, complete sequence Length = 179032 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gagactccaaccaaagacaa 415 |||||||||||||||||||| Sbjct: 33188 gagactccaaccaaagacaa 33207
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 208690 ccaaccaaagaaaagctcatggag 208713
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccaaccaaagacaagctcatggag 425 ||||||||||| |||||||||||| Sbjct: 202600 ccaaccaaagaaaagctcatggag 202623
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 gcgttcccgaggaacatcggcgtc 152 ||||||||||||||| |||||||| Sbjct: 1014154 gcgttcccgaggaacgtcggcgtc 1014177
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 gaggttgccctgcaggtcgc 511 |||||||||||||||||||| Sbjct: 770340 gaggttgccctgcaggtcgc 770359
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cttcaggaactggttcagaa 342 |||||||||||||||||||| Sbjct: 865911 cttcaggaactggttcagaa 865930
>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence Length = 176325 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ccagagactccaaccaaaga 412 |||||||||||||||||||| Sbjct: 35897 ccagagactccaaccaaaga 35916
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cttcaggaactggttcagaa 342 |||||||||||||||||||| Sbjct: 1656103 cttcaggaactggttcagaa 1656084
>gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete sequence Length = 191289 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gagactccaaccaaagacaa 415 |||||||||||||||||||| Sbjct: 140371 gagactccaaccaaagacaa 140390 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,685,884 Number of Sequences: 3902068 Number of extensions: 3685884 Number of successful extensions: 67875 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67355 Number of HSP's gapped (non-prelim): 518 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
