ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8d10 |
|---|---|
| Clone Library Name | barley_pub |
>PTPM1_DROME (Q86BN8) Protein-tyrosine phosphatase mitochondrial 1-like protein,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like protein) Length = 200 Score = 61.2 bits (147), Expect = 6e-10 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 1/63 (1%) Frame = +3 Query: 186 ARMLFYPTLVYNVVRNQCESHFHWWDQVDEHVLLGAVPFPSDVLRL-QKLGVCGVVTLNE 362 AR+ FYPTL+YNV+ + + +W+D++DEHV+LGA+PF S L +K + VV++NE Sbjct: 9 ARVSFYPTLLYNVLMEKASAR-NWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNE 67 Query: 363 SYE 371 YE Sbjct: 68 DYE 70
>PTPM1_RAT (P0C089) Protein-tyrosine phosphatase mitochondrial 1,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) Length = 193 Score = 55.5 bits (132), Expect = 3e-08 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Frame = +3 Query: 186 ARMLFYPTLVYNVVRNQC--ESHFHWWDQVDEHVLLGAVPFPSDVLRL-QKLGVCGVVTL 356 AR+LFYPTL+Y V R + +H W+ ++D VLLGA+P S RL V GV+T+ Sbjct: 12 ARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGALPLRSMTRRLVLDENVRGVITM 71 Query: 357 NESYE 371 NE YE Sbjct: 72 NEEYE 76
>PTPM1_HUMAN (Q8WUK0) Protein-tyrosine phosphatase mitochondrial 1,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like phosphatase) (Phosphoinositide lipid phosphatase) Length = 201 Score = 55.1 bits (131), Expect = 4e-08 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Frame = +3 Query: 186 ARMLFYPTLVYNVVRNQC--ESHFHWWDQVDEHVLLGAVPFPSDVLRL-QKLGVCGVVTL 356 AR+LFYPTL+Y + R + +H W+ ++D VLLGA+P S +L Q V GV+T+ Sbjct: 12 ARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLVQDENVRGVITM 71 Query: 357 NESYE 371 NE YE Sbjct: 72 NEEYE 76
>PTPM1_MOUSE (Q66GT5) Protein-tyrosine phosphatase mitochondrial 1,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like phosphatase) (Phosphoinositide lipid phosphatase) Length = 193 Score = 55.1 bits (131), Expect = 4e-08 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Frame = +3 Query: 186 ARMLFYPTLVYNVVRNQCE--SHFHWWDQVDEHVLLGAVPFPSDVLRL-QKLGVCGVVTL 356 AR+LFYPTL+Y V R + +H W+ ++D VLLGA+P + RL V GV+T+ Sbjct: 12 ARVLFYPTLLYTVFRGRVRGPAHRDWYHRIDHTVLLGALPLKNMTRRLVLDENVRGVITM 71 Query: 357 NESYE 371 NE YE Sbjct: 72 NEEYE 76
>YMS2_MAIZE (P10579) Hypothetical 39 kDa protein in mitochondrial S-1 and S-2| DNA (URF 2) Length = 339 Score = 32.0 bits (71), Expect = 0.37 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = +3 Query: 204 PTLVYNVVRNQCESHFHWWDQ--VDEHVLLGAVP--FPSDVLRLQKLGVCGVVTLNES 365 P L+Y+V+R + + W D+ +D H L+G P D+L L+ L + T+N++ Sbjct: 96 PPLIYDVIRMEASKGYLWLDERNLDTHSLIGVYKCRVPMDLLVLKGLSNVILTTVNKA 153
>COAC_CHICK (P11029) Acetyl-CoA carboxylase (EC 6.4.1.2) (ACC) [Includes: Biotin| carboxylase (EC 6.3.4.14)] Length = 2324 Score = 31.6 bits (70), Expect = 0.49 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 213 VYNVVRNQCESHFHWWDQVDEHVLLGAVPFPSDVLRLQKL 332 VY++ +S WD ++EH L P PSD+L +L Sbjct: 1575 VYDIPEMFRQSLIKLWDSMNEHAFLPTPPLPSDILTYTEL 1614
>HEMH_STRCO (O50533) Probable ferrochelatase (EC 4.99.1.1) (Protoheme| ferro-lyase) (Heme synthetase) Length = 375 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +2 Query: 191 DALLPDAGVQRRQEPMRVSLPLVGSGRRACAAGCCSIPERCFAAAEARS 337 D +L AG +R QE +L +G+ C GCC AAA A S Sbjct: 324 DLVLERAGDERGQEVTPCALGTLGASHNLCPVGCCPARAPRPAAAGADS 372
>HIS4_PYRFU (P58791) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 240 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +3 Query: 255 WWDQVDEHVLLGAVPFPSDVLRLQKLGVCGVVTLNESYE 371 W D+ E + G V P+D+++L ++G GV+ YE Sbjct: 181 WGDE--EFIYAGGVATPTDIIQLAEIGFSGVIIGKALYE 217
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 350 DHTTNSELLQPQNIAREWNSTQQHMLVDLIPP 255 D N +L+QPQ IAR QQH+ V++ PP Sbjct: 4901 DTAGNQQLVQPQIIARHLQQ-QQHLQVNVPPP 4931
>ACCA_GLOVI (Q7NCW2) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 326 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +3 Query: 171 AVGVGARMLFYPTLVYNVVRNQCESHFHWWDQVDEHVLLGAVPFPSDVLRLQKLGV 338 A+GVG RML + VY+V+ S W D+ +H+ A L++LG+ Sbjct: 214 AIGVGNRMLMFEYAVYSVISPDSCSVILWRDK--KHIEQAANALKITARDLKQLGI 267
>STC2_MOUSE (O88452) Stanniocalcin-2 precursor (STC-2)| Length = 296 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Frame = -2 Query: 348 PHHK-----LRASAAAKHRSGMEQHPAAHAR 271 PHH+ L A+ AK G + HP AHAR Sbjct: 237 PHHRDTDHHLTANRGAKGERGSKSHPNAHAR 267
>RUVA_NITEU (Q820S3) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 195 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 225 VRNQCESHFHWWDQVDEHVLLGAVPFPSDVLRLQKLGVCGV 347 + Q H H+W + D H+L G + P VL Q + G+ Sbjct: 41 IGEQVTLHTHFWVREDAHLLFGFMTEPERVLFRQLTKISGI 81
>UGPE_ECOLI (P10906) sn-glycerol-3-phosphate transport system permease protein| ugpE Length = 281 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 302 EWNSTQQHMLVDLIPPVEVRLAL 234 EWNS ML+ LIPPV + L + Sbjct: 246 EWNSVMVAMLLTLIPPVVIVLVM 268
>NEU2_RAT (P01186) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-I); Copeptin] Length = 168 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = +2 Query: 260 GSGRRACAAGCCSIPERCFAAAEAR 334 GSG R AAG C E C A E R Sbjct: 97 GSGGRCAAAGICCSDESCVAEPECR 121
>ZIC4_MOUSE (Q61467) Zinc finger protein ZIC 4 (Zinc finger protein of the| cerebellum 4) Length = 341 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 312 HRSGMEQHPAAHARRPDPTSGSETRIGS 229 H S + +H H R P P+SG ++ I S Sbjct: 284 HPSSLRKHMKVHGRSPPPSSGYDSAITS 311
>PDXJ_NITOC (Q3JCY8) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 246 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 194 ALLPDAGVQRRQEPMRVSLPLVGSGRRACAAGCCSIPER 310 ALL D V + M V+ ++ + C CC +PER Sbjct: 62 ALLRDVLVSKMNLEMAVTGEMLAIAEKYCPEDCCLVPER 100
>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678| Length = 525 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +3 Query: 231 NQCESHFHWWDQVDEH--VLLGAVPFPSD 311 ++C+ F+WW Q+ H + G P+P + Sbjct: 184 DECDKVFNWWSQLTSHKKIHSGEKPYPCE 212 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,952,228 Number of Sequences: 219361 Number of extensions: 670925 Number of successful extensions: 2211 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2204 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
