ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7o03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 30 5.5
2ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amilo... 30 7.2
3IRPL2_MOUSE (Q9ERS6) X-linked interleukin-1 receptor accessory p... 30 7.2
4IRPL2_HUMAN (Q9NP60) X-linked interleukin-1 receptor accessory p... 30 7.2
5LIP_RHIOR (P61872) Lipase precursor (EC 3.1.1.3) (Triacylglycero... 29 9.4
6LIP_RHINI (P61871) Lipase precursor (EC 3.1.1.3) (Triacylglycero... 29 9.4

>SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 570

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 201 GFIQLRQFVYFTDSFFFHAGSRQYDHFPIY 290
           G I+LR+F      FF H G +++ HF +Y
Sbjct: 199 GVIRLREFNQAELEFFVHPGEKKHPHFSLY 228



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>ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive|
           cation channel 4, pituitary) (Acid-sensing ion channel
           4)
          Length = 647

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 44  LVPIKASTQLRPIFALPLHRAELLLARATEEPASLASP 157
           L P+  S + +P+  LPL RA  LLAR  +   +LASP
Sbjct: 85  LFPLALSLEEQPLPPLPLGRAPGLLAREGQGREALASP 122



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>IRPL2_MOUSE (Q9ERS6) X-linked interleukin-1 receptor accessory protein-like 2|
           precursor (IL1RAPL-2-related protein) (TIGIRR-1)
          Length = 686

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 555 KVYRCMKLNRNNIVIYQEIHVSYGSNYTCNWK 460
           K++R + + + N ++ QE+    G NYTC  K
Sbjct: 186 KMWRSIIIQKGNALLIQEVQEEDGGNYTCELK 217



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>IRPL2_HUMAN (Q9NP60) X-linked interleukin-1 receptor accessory protein-like 2|
           precursor (IL1RAPL-2-related protein) (Interleukin-1
           receptor 9) (IL-1R9) (IL-1 receptor accessory
           protein-like 2) (Three immunoglobulin domain-containing
           IL-1 receptor-related
          Length = 686

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 555 KVYRCMKLNRNNIVIYQEIHVSYGSNYTCNWK 460
           K++R + + + N ++ QE+    G NYTC  K
Sbjct: 186 KMWRSIIIQKGNALLIQEVQEEDGGNYTCELK 217



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>LIP_RHIOR (P61872) Lipase precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
           (ROL) (RDL)
          Length = 392

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 202 PHAPKR-FRTLVPGLAWGS*AGWFFSGTSKQQLCSMQWQSKD 80
           PH P + F  L PG+       W  SGTS  Q+C+ + ++KD
Sbjct: 330 PHVPPQSFGFLHPGVE-----SWIKSGTSNVQICTSEIETKD 366



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>LIP_RHINI (P61871) Lipase precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
           (Lipase II) (RNL)
          Length = 392

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 202 PHAPKR-FRTLVPGLAWGS*AGWFFSGTSKQQLCSMQWQSKD 80
           PH P + F  L PG+       W  SGTS  Q+C+ + ++KD
Sbjct: 330 PHVPPQSFGFLHPGVE-----SWIKSGTSNVQICTSEIETKD 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,361,221
Number of Sequences: 219361
Number of extensions: 1788394
Number of successful extensions: 4617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4616
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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