>RRMJ_RHIME (Q92RT9) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 245

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 SKRSCNLEFFVLGSGFKGEHRLNS 317
           S R+ ++E F+L  GFKG H L S
Sbjct: 212 SSRAESVEMFLLAKGFKGRHALES 235

>SFSA_THEAC (Q9HK14) Sugar fermentation stimulation protein homolog|
          Length = 222

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 120 FVPNYQTEPSYIFVFVRLMP 61
           F PN++T+P +   F+RL+P
Sbjct: 166 FYPNFETDPKFAEAFLRLVP 185

>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 106  PN*TILYFCFCTINAIPES 50
            PN T   + FCT+NA+PE+
Sbjct: 5276 PNNTNAQYLFCTVNALPEA 5294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,308,619
Number of Sequences: 219361
Number of extensions: 460194
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)