ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8c22 |
|---|---|
| Clone Library Name | barley_pub |
>FRM4A_HUMAN (Q9P2Q2) FERM domain-containing protein 4A| Length = 1024 Score = 32.3 bits (72), Expect = 0.49 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 15/102 (14%) Frame = -3 Query: 402 YQNQAKSHST-AVYKHTPSIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDT 226 YQ SH + HT S T + + +Q ++SS + H R TR P+M + Sbjct: 917 YQRSTASHKEHSRLSHTSS----TSSDSGSQYSTSSQSTFVAHSRV---TRMPQMCKATS 969 Query: 225 AAGPES--------------PTSPHAVATWHDGRRPGGAAVL 142 AA P+S P+SPH + TW G + +L Sbjct: 970 AALPQSQRSSTPSSEIGATPPSSPHHILTWQTGEATENSPIL 1011
>FRM4A_MOUSE (Q8BIE6) FERM domain-containing protein 4A| Length = 1020 Score = 31.6 bits (70), Expect = 0.83 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 15/102 (14%) Frame = -3 Query: 402 YQNQAKSHST-AVYKHTPSIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDT 226 YQ SH + HT S T + + +Q ++SS + H R TR P+M + Sbjct: 913 YQRSTASHKEHSRLSHTSS----TSSDSGSQYSTSSQSTFVAHSRV---TRMPQMCKATS 965 Query: 225 AAGPES--------------PTSPHAVATWHDGRRPGGAAVL 142 AA P+S P+SPH + TW G + ++ Sbjct: 966 AALPQSQRSSTPSSEIGATPPSSPHHILTWQTGEATENSPIM 1007
>ETS3_DROME (P29774) DNA-binding protein D-ETS-3| Length = 490 Score = 30.4 bits (67), Expect = 1.9 Identities = 23/79 (29%), Positives = 37/79 (46%) Frame = -3 Query: 393 QAKSHSTAVYKHTPSIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGP 214 Q S + P++PSLT ASSS +H++HK R K ++C T++ Sbjct: 171 QVTSGTLDAVSAAPALPSLT--------ASSS--SHVEHKV---RADKSTLDCATTSSHA 217 Query: 213 ESPTSPHAVATWHDGRRPG 157 +P+S + + GR G Sbjct: 218 AAPSSSSSASDHQQGRISG 236
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -3 Query: 342 SLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 196 +L I T A A + + K GDN+T +P ++ GP P +P Sbjct: 171 TLVILSTVAPDAGRYYVQAVNDKNGDNKTSQPITLAVENVGGPADPIAP 219
>GTR10_HUMAN (O95528) Solute carrier family 2, facilitated glucose transporter| member 10 (Glucose transporter type 10) Length = 541 Score = 29.3 bits (64), Expect = 4.1 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Frame = -3 Query: 414 AVPNYQNQAKSHSTAVYKHTPSIPSLT-INLTRAQPASSSPLAHIQHKRGDNRTRKPRMN 238 AVPN Q + S+P + N + +P S+ H R + + PR+ Sbjct: 331 AVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAKKTKPHPRSGDPSAPPRLA 390 Query: 237 CLDTAAGPESPTSPHAVATW 178 GP P HA+ W Sbjct: 391 LSSALPGPPLPARGHALLRW 410
>DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vulgaris antigen| homolog) Length = 993 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 Query: 158 PGRRPSCHVATAWGLVGDSGPAAVSRQFILGFRVLLSPLLCWMCASGEELAGCA 319 P R P+ + ++W L GPAA+ + +LL+PLL C G G A Sbjct: 601 PSREPNTYGESSWRL----GPAAIGLILLGLLMLLLAPLLLLTCDCGSGPIGGA 650
>VINEX_HUMAN (O60504) Vinexin (Sorbin and SH3 domain-containing protein 3)| (SH3-containing adapter molecule 1) (SCAM-1) Length = 671 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 258 TRKPRMNCLDTAAGPESPTSPHAVATWHDGRRPGGAAVL 142 +R+PR+ D GP+ PTSP A R P + L Sbjct: 513 SREPRLRLCDD--GPQLPTSPRLTAAARSARHPSSPSAL 549
>WRK72_ARATH (Q9LXG8) Probable WRKY transcription factor 72 (WRKY DNA-binding| protein 72) Length = 548 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = -3 Query: 360 HTPSIPSLTINLTRAQ--PASSSPLAHIQHKRGDN---RTRKPRMNCLDTAAGPESPTSP 196 H+P P++T++LT Q +SSS L + + N R +N T++ +P++ Sbjct: 340 HSPLHPTVTLDLTAPQHSSSSSSSLLSLNFNKFSNSFQRFPSTSLNFSSTSSTSSNPSTL 399 Query: 195 HAVATWHDG 169 + A W +G Sbjct: 400 NLPAIWGNG 408
>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16| Length = 417 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -3 Query: 306 SSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSPHAVATWHDG 169 S++PLA +H+R +T P + + S + PH VATWH G Sbjct: 46 SANPLAR-RHERVRLKTASP---AVVKHSNHSSASPPHEVATWHHG 87
>TOP2A_MOUSE (Q01320) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1528 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = -3 Query: 267 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 166 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 93 DNKQRDPKMSCIRVTIDPEN----NVISIWNNGK 122
>CUTC_XYLFT (Q87DU4) Copper homeostasis protein cutC| Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +2 Query: 176 CHVATAWGLVGDSGPAAVSRQFI-LGFRVLLSPLLCWMCASGEEL-AGCARVRLIVRLGM 349 CH GL G AV R+ + + VL+ P S EE+ C V VRLG Sbjct: 52 CHGLEGGGLTPSYGMLAVVRERLHIPLYVLIRPRGGDFVFSEEEMEVMCGDVECCVRLGC 111 Query: 350 DGVCL 364 DGV L Sbjct: 112 DGVVL 116
>TREY_MYCTU (Q10768) Putative maltooligosyl trehalose synthase (EC 5.4.99.15)| ((1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase) Length = 765 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 6/40 (15%) Frame = -3 Query: 237 CLDTAAGPESPTSPHAVATW--HDGR----RPGGAAVLGC 136 C+ AAG + P P AVA H GR PG AAVL C Sbjct: 347 CIAAAAGADHPLLPAAVAALLRHIGRYRCDYPGQAAVLPC 386
>WDR8_HUMAN (Q9P2S5) WD-repeat protein 8| Length = 460 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 263 LSPLLCWMCASGEELAGCARVRLIVR 340 LS LLC G+ LA C + RL+VR Sbjct: 9 LSSLLCKFSPDGKYLASCVQYRLVVR 34
>SECD_RICPR (Q9ZCW8) Protein-export membrane protein secD| Length = 518 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 190 GVGAGRGFRACCCVQAIHSWLSRSVITPLVLDV 288 GVGA +GF + I S S +IT L++DV Sbjct: 473 GVGAIKGFAVALTIGIISSMFSAIIITKLLIDV 505
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 28.5 bits (62), Expect = 7.1 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 16/88 (18%) Frame = -3 Query: 411 VPNYQNQA---KSHSTAVYKHTPSIP------------SLTINLT-RAQPASSSPLAHIQ 280 +PN +Q ++HST+V P + S+T NL RAQP + P+ Sbjct: 911 IPNLTSQVTEGRAHSTSVNMPEPVLTGPEAQPLTSAEQSVTSNLNPRAQPLTLEPVPQTS 970 Query: 279 HKRGDNRTRKPRMNCLDTAAGPESPTSP 196 H+R T K GP+S ++P Sbjct: 971 HQRRRRATGK--QGSRTAPVGPKSYSTP 996
>PER_ANTPE (Q17062) Period circadian protein| Length = 849 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 360 HTPSIPSLTINLTRA-QPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 196 +TPS+ NL R+ + S P+A+ H + R+ + C A P S T+P Sbjct: 681 NTPSVYEKPHNLKRSSKQMESEPIANKHHCPSSRQFRRKQTTCSGGFAQPPSATNP 736
>TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1533 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = -3 Query: 267 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 166 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 94 DNKQRDPKMSCIRVTIDPEN----NLISIWNNGK 123
>CUTC_XYLFA (Q9PDN8) Copper homeostasis protein cutC| Length = 267 Score = 28.1 bits (61), Expect = 9.2 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +2 Query: 176 CHVATAWGLVGDSGPAAVSRQFI-LGFRVLLSPLLCWMCASGEEL-AGCARVRLIVRLGM 349 CH GL G AV R+ + + VL+ P S EE+ C V VRLG Sbjct: 52 CHGLGGGGLTPSYGMLAVVRERLHIPLYVLIRPRGGDFVFSEEEMEVMCCDVECCVRLGC 111 Query: 350 DGVCL 364 DGV L Sbjct: 112 DGVVL 116
>TOP2A_HUMAN (P11388) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1531 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = -3 Query: 267 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 166 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 94 DNKQRDPKMSCIRVTIDPEN----NLISIWNNGK 123
>CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing protein 15 (Nod2| protein) Length = 1020 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 400 SKSSQIPLYRSIQTHAIHPESDNQSH 323 + S LY S TH++HP D QSH Sbjct: 92 ANSHTFELYGSWDTHSLHPTRDLQSH 117
>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad| ubiquitination regulatory factor 1 homolog) (DSmurf) (Lethal with a checkpoint kinase protein) Length = 1061 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/56 (26%), Positives = 24/56 (42%) Frame = -3 Query: 318 AQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGRRPGGA 151 A P SS+ A ++ DN + P+ A +PTSP + +G G+ Sbjct: 312 ATPTSSTTSASVRLHSNDNHVKTPKHQTNGHAPPESTPTSPTGQQNYVNGNAQNGS 367
>TOP2A_CRIGR (P41515) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = -3 Query: 267 DNRTRKPRMNCLDTAAGPESPTSPHAVATWHDGR 166 DN+ R P+M+C+ PE+ + ++ W++G+ Sbjct: 93 DNKQRDPKMSCIRVTIDPEN----NLISIWNNGK 122
>SFRS8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Suppressor of| white apricot protein homolog) Length = 951 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -3 Query: 408 PNYQNQAKSHSTAVYKHTPSIPSLTINLTRAQPASSSP--LAHIQHKRGDNRT 256 P Y + +KS S + K S+PS + R++ S SP AH +R + R+ Sbjct: 772 PKYHSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERS 824
>LFTR_RALSO (Q8XYY9) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 248 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = -3 Query: 195 HAVATWHDGRRPGG 154 H+V TWH GRR GG Sbjct: 138 HSVETWHGGRRVGG 151
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -3 Query: 351 SIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 196 S P ++N T A ASS+PL + + + P + T + S T+P Sbjct: 470 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 521 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -3 Query: 351 SIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAGPESPTSP 196 S P ++N T A ASS+PL + + + P + T + S T+P Sbjct: 356 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 407 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -3 Query: 396 NQAKSHSTAVYKHTPSIPSLTINLTRAQPASSSPLAHIQHKRGDNRTRKPRMNCLDTAAG 217 + S ++ T S P ++N T A ASS+PL + + + P + T+A Sbjct: 325 SSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSAT 384 Query: 216 PESPT 202 S T Sbjct: 385 SASST 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,130,247 Number of Sequences: 219361 Number of extensions: 1297038 Number of successful extensions: 4509 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4497 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
