ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7n21 |
|---|---|
| Clone Library Name | barley_pub |
>CCAPR_DROME (Q868T3) Cardioacceleratory peptide receptor| Length = 506 Score = 32.7 bits (73), Expect = 0.21 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = +3 Query: 177 ASGVRSGGKLLGPSCILAVALPFFAGLLSHVLL 275 A GV +GG+ L P+ + AV L +F +SHV+L Sbjct: 40 AGGVAAGGESLTPTDVAAVNLTYFTPAISHVML 72
>ACO1_SCHPO (O94523) Probable acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA| desaturase) (Fatty acid desaturase) (Delta(9)-desaturase) Length = 479 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +2 Query: 191 IWGQTTRSFLYLGCCSSLFCRLAVTCSAWLAGMLGLADLEFGHRQRNKFGDVLV 352 +WG + Y G C +F A C LA ++G + + RN F LV Sbjct: 224 LWGDYRGGYFYAGVCRLVFVHHATFCVNSLAHLIGSQPFDDTNSARNHFITALV 277
>Y1265_GLUOX (Q5FRH0) UPF0078 membrane protein GOX1265| Length = 210 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 226 WLLLFPFLPACCHMFCLASRHARISRSG 309 W+L +P ACC ++ L +R +RIS +G Sbjct: 121 WVLCWPVGLACCVVWLLVARLSRISSAG 148
>LECT1_RABIT (O77770) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)] Length = 333 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 221 YLGCCSSLFCRLAVTCSAWLAGMLGL 298 Y GC S+ CR+ + CS W+A +LG+ Sbjct: 309 YQGCRSA--CRVVMPCSWWVARILGM 332
>LECT1_RAT (O70367) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)] Length = 334 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 221 YLGCCSSLFCRLAVTCSAWLAGMLGL 298 Y GC S+ CR+ + CS W+A +LG+ Sbjct: 310 YQGCRSA--CRVVMPCSWWVARILGM 333
>LECT1_MOUSE (Q9Z1F6) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)] Length = 334 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 221 YLGCCSSLFCRLAVTCSAWLAGMLGL 298 Y GC S+ CR+ + CS W+A +LG+ Sbjct: 310 YQGCRSA--CRVVMPCSWWVARILGM 333
>B3A4_RAT (Q8K4V2) Anion exchange protein 4 (Anion exchanger 4) (Solute| carrier family 4 member 9) Length = 953 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 153 VRASVLTAASGVRSGGKLLGPSCILAVALPFFAGLL 260 V AS L + +R GG GPSC + FF+ LL Sbjct: 569 VNASFLPPSECIRQGGYPRGPSCHTVPDIAFFSLLL 604
>IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 gamma| (eIF-4-gamma) (eIF-4G) Length = 1403 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 312 NSRSANPSMPASQAEHVTASRQKREEQQPRYRKDLV 205 N+ S NPS S+AE TA+ + E++ RKD + Sbjct: 494 NASSPNPSETNSRAETPTAAPPQISEEEASQRKDAI 529
>TALA_POVLY (P04008) Large T antigen| Length = 697 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 170 NSGVGR*IWGQTTRSFLYLGCCSSLFCRLAVTCSA 274 N G G WG+ R F+ CC LFC ++ S+ Sbjct: 109 NPGEGS--WGKWWREFVNRQCCDDLFCSETMSSSS 141
>CMC2_CAEEL (Q20799) Probable calcium-binding mitochondrial carrier F55A11.4| Length = 588 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = -3 Query: 276 QAEHVTASRQKREEQQPRYRKDLVVCPQI*RPTPLLAPKHVP 151 Q E + + +++E+ + +Y + + TPLL+PKHVP Sbjct: 7 QTESTSGAAEQKEDDEEQYVQLSSLGEYKDEVTPLLSPKHVP 48
>LECT1_HUMAN (O75829) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)] Length = 334 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 221 YLGCCSSLFCRLAVTCSAWLAGMLGL 298 Y GC S+ CR+ + CS W+A +LG+ Sbjct: 310 YQGCRSA--CRVIMPCSWWVARILGM 333
>LECT1_BOVIN (P17404) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) (Small cartilage-derived glycoprotein) (SCGP) [Contains: Chondrosurfactant protein (CH-SP)] Length = 335 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 221 YLGCCSSLFCRLAVTCSAWLAGMLGL 298 Y GC S+ CR+ + CS W+A +LG+ Sbjct: 311 YQGCRSA--CRVIMPCSWWVARILGM 334
>NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precursor| (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation factor) (Heregulin) (HRG) (Acetylcholine receptor-inducing activity) (ARIA) (Sensory and motor neuron-derived factor) (Glial grow Length = 662 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 345 TSPNLFLCRWPNSRSANPSMPASQAEHVTASRQKREE-QQPRYRK 214 ++P+ +LC+ PN + + A SR+KR+E ++P RK Sbjct: 203 SNPSRYLCKCPNEFTGDRCQNYVMASFYMTSRRKRQETEKPLERK 247
>HEM6_MOUSE (P36552) Coproporphyrinogen III oxidase, mitochondrial precursor| (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) (COX) Length = 443 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/31 (54%), Positives = 18/31 (58%) Frame = +2 Query: 236 SSLFCRLAVTCSAWLAGMLGLADLEFGHRQR 328 S L RLA T LAG+ GLA FGH QR Sbjct: 61 SGLGTRLAAT----LAGLAGLAAAAFGHVQR 87
>PEX6_ASHGO (Q74Z13) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1021 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +3 Query: 150 EVRASVLTAASGVRSGGKLLGPSCILAVALPFFAGLL 260 ++R + + VR+G KL P C + +P++ GL+ Sbjct: 128 QIRGDLRDCGTVVRAGQKLFVPWCQILDCVPYYQGLI 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,047,595 Number of Sequences: 219361 Number of extensions: 967445 Number of successful extensions: 2773 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2772 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
