ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid) 31 1.0
2COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor 28 5.2
3COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor 28 5.2
4IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase i... 28 8.9

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 13   ARGDSDPPGRPGHGSPLARERRLFPH 90
            A G   PPG PG G+ L ++  +FPH
Sbjct: 1753 APGGYGPPGMPGGGAQLVKKELIFPH 1778



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>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 19  GDSDPPGRPGHGSP 60
           G S PPG+PG+GSP
Sbjct: 75  GPSGPPGKPGYGSP 88



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>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 19  GDSDPPGRPGHGSP 60
           G S PPG+PG+GSP
Sbjct: 75  GPSGPPGKPGYGSP 88



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>IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1|
           precursor
          Length = 102

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +2

Query: 92  CCNNCR-SFSGVDVCDD 139
           CC NC  SFSG+  CDD
Sbjct: 46  CCTNCNFSFSGLYTCDD 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.143    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,323,664
Number of Sequences: 219361
Number of extensions: 329392
Number of successful extensions: 1172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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