ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal8c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 363 1e-97
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 359 2e-96
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 347 8e-93
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 234 8e-59
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 234 8e-59
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 206 2e-50
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 2e-41
8dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 6e-29
9dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 6e-29
10dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 6e-29
11dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 6e-29
12dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 6e-29
13gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 2e-28
14gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 2e-28
15gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 2e-28
16dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 2e-28
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 2e-28
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 2e-28
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 2e-28
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 8e-25
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 3e-24
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 8e-19
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
24dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
25gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 1e-08
26gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 1e-08
27gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 1e-08
28gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 1e-08
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.62
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.62
31emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.62
32gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 2.5
33gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 2.5
34gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 2.5
35gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 2.5
36gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 2.5
37gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 2.5
38gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 2.5
39gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 2.5
40emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 2.5
41ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 2.5
42gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 2.5
43gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 2.5
44gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal... 38 9.7
45gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence 38 9.7
46gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, c... 38 9.7
47gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com... 38 9.7
48emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 9.7
49gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome... 38 9.7
50emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230... 38 9.7
51gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome... 38 9.7
52gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 38 9.7
53gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, co... 38 9.7
54gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ... 38 9.7
55emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in... 38 9.7
56gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 38 9.7
57dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 9.7
58gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complet... 38 9.7
59gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosom... 38 9.7
60gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosom... 38 9.7
61gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosom... 38 9.7
62gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 38 9.7
63dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
64dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
65emb|CR937049.3| CH230-323M7, complete sequence 38 9.7 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                        
Query: 14   gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582

                                                                        
Query: 74   ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 7642

                                                                        
Query: 134  catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 7702

               
Query: 194  gct 196
            |||
Sbjct: 7703 gct 7705
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  359 bits (181), Expect = 2e-96
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                        
Query: 16   ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224

                                                                        
Query: 76   aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 1284

                                                                        
Query: 136  tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 1344

             
Query: 196  t 196
            |
Sbjct: 1345 t 1345
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  347 bits (175), Expect = 8e-93
 Identities = 196/199 (98%), Gaps = 3/199 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccg-tgccggaaggttg 59
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1456 tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgatgccggaaggttg 1515

                                                                        
Query: 60   caccgaccaaaatgccaagaactacgacccaacggcaaggagcgacg-acggcagctgcc 118
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1516 caccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgaacggcagctgcc 1575

                                                                        
Query: 119  tttacaccttttaagcatgccacttttaatatctgatgttttacctac-ctaagtccgca 177
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1576 tttacaccttttaagcatgccacttttaatatctgatgttttacctacactaagtccgca 1635

                               
Query: 178  tcgcatccaagcgattgct 196
            |||||||||||||||||||
Sbjct: 1636 tcgcatccaagcgattgct 1654
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  234 bits (118), Expect = 8e-59
 Identities = 183/202 (90%), Gaps = 7/202 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgc 60
           ||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| |||
Sbjct: 525 tgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgc 584

                                                                       
Query: 61  accgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctt 120
           |||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 585 accgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcctt 644

                                                                       
Query: 121 tacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt-cc 174
           ||||||||||||||||||||  ||||||||||||||||||| |     ||||||||| ||
Sbjct: 645 tacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagtacc 703

                                 
Query: 175 gcatcgcatccaagcgattgct 196
           ||||||||||||||||||||||
Sbjct: 704 gcatcgcatccaagcgattgct 725
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  234 bits (118), Expect = 8e-59
 Identities = 183/202 (90%), Gaps = 7/202 (3%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgc 60
            ||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| |||
Sbjct: 1375 tgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgc 1434

                                                                        
Query: 61   accgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctt 120
            |||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 1435 accgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcctt 1494

                                                                        
Query: 121  tacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt-cc 174
            ||||||||||||||||||||  ||||||||||||||||||| |     ||||||||| ||
Sbjct: 1495 tacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagtacc 1553

                                  
Query: 175  gcatcgcatccaagcgattgct 196
            ||||||||||||||||||||||
Sbjct: 1554 gcatcgcatccaagcgattgct 1575
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  206 bits (104), Expect = 2e-50
 Identities = 134/144 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgc 60
            ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| 
Sbjct: 1384 tgctgcataggaggaggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgt 1443

                                                                        
Query: 61   accgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctt 120
            |||||||   |||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 1444 accgaccgggatgccaagaacttcgacccaaccgcgaggagcgacgacggcagctgcctt 1503

                                    
Query: 121  tacaccttttaagcatgccacttt 144
            ||||||||||||||||||||||||
Sbjct: 1504 tacaccttttaagcatgccacttt 1527
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 2e-41
 Identities = 119/129 (92%)
 Strand = Plus / Plus

                                                                        
Query: 16   ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 75
            |||||||||||||| ||||| |||||||| |||||||||||||| |||||||   |||||
Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1420

                                                                        
Query: 76   aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 135
            ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 aagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagca 1480

                     
Query: 136  tgccacttt 144
            |||||||||
Sbjct: 1481 tgccacttt 1489
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 9    aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 65
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444

                                                                        
Query: 66   ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 125
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1445 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1504

                      
Query: 126  cttttaagca 135
            ||||||||||
Sbjct: 1505 cttttaagca 1514
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 9    aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 65
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482

                                                                        
Query: 66   ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 125
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1483 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1542

                      
Query: 126  cttttaagca 135
            ||||||||||
Sbjct: 1543 cttttaagca 1552
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 9    aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 65
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481

                                                                        
Query: 66   ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 125
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1482 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1541

                      
Query: 126  cttttaagca 135
            ||||||||||
Sbjct: 1542 cttttaagca 1551
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 9    aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 65
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265

                                                                        
Query: 66   ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 125
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1266 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1325

                      
Query: 126  cttttaagca 135
            ||||||||||
Sbjct: 1326 cttttaagca 1335
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 9    aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 65
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486

                                                                        
Query: 66   ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 125
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1487 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1546

                      
Query: 126  cttttaagca 135
            ||||||||||
Sbjct: 1547 cttttaagca 1556
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                          
Query: 41     tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
              |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 107252 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 107193

                                                 
Query: 101    gcgacgacggcagctgcctttacaccttttaagca 135
              |||||||||||||||||||||||||||||||||||
Sbjct: 107192 gcgacgacggcagctgcctttacaccttttaagca 107158



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 43     cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 102
              ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 112127 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 112068

                             
Query: 103    gacgacggcagctgc 117
              |||||||||||||||
Sbjct: 112067 gacgacggcagctgc 112053
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                         
Query: 41    tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
             |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 29133 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 29074

                                                
Query: 101   gcgacgacggcagctgcctttacaccttttaagca 135
             |||||||||||||||||||||||||||||||||||
Sbjct: 29073 gcgacgacggcagctgcctttacaccttttaagca 29039



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                         
Query: 43    cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 102
             ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 34004 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 33945

                            
Query: 103   gacgacggcagctgc 117
             |||||||||||||||
Sbjct: 33944 gacgacggcagctgc 33930
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 41   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1426 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1485

                                               
Query: 101  gcgacgacggcagctgcctttacaccttttaagca 135
            |||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcgacgacggcagctgcctttacaccttttaagca 1520
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 41   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1336 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1395

                                               
Query: 101  gcgacgacggcagctgcctttacaccttttaagca 135
            |||||||||||||||||||||||||||||||||||
Sbjct: 1396 gcgacgacggcagctgcctttacaccttttaagca 1430
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 41       tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
                |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 28302395 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28302336

                                                   
Query: 101      gcgacgacggcagctgcctttacaccttttaagca 135
                |||||||||||||||||||||||||||||||||||
Sbjct: 28302335 gcgacgacggcagctgcctttacaccttttaagca 28302301



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 43       cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 102
                ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 28307266 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28307207

                               
Query: 103      gacgacggcagctgc 117
                |||||||||||||||
Sbjct: 28307206 gacgacggcagctgc 28307192
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 41       tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
                |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 28284844 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28284785

                                                   
Query: 101      gcgacgacggcagctgcctttacaccttttaagca 135
                |||||||||||||||||||||||||||||||||||
Sbjct: 28284784 gcgacgacggcagctgcctttacaccttttaagca 28284750



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 43       cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 102
                ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 28289715 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28289656

                               
Query: 103      gacgacggcagctgc 117
                |||||||||||||||
Sbjct: 28289655 gacgacggcagctgc 28289641
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 41   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1371 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1430

                                               
Query: 101  gcgacgacggcagctgcctttacaccttttaagca 135
            |||||||||||||||||||||||||||||||||||
Sbjct: 1431 gcgacgacggcagctgcctttacaccttttaagca 1465
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 8e-25
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                       
Query: 41  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
           |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 5   tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 64

                                        
Query: 101 gcgacgacggcagctgcctttacaccttt 129
           |||||||||||||||||||||||||||||
Sbjct: 65  gcgacgacggcagctgcctttacaccttt 93
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 3e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Plus

                                                                        
Query: 9    aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 65
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493

                                                                        
Query: 66   ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 125
            ||    ||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1494 ccctgttgccaagaatt-cgacccaacggcgaggagcgacgacggcagctgcctttacac 1552

                      
Query: 126  cttttaagca 135
            ||||||||||
Sbjct: 1553 cttttaagca 1562
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 8e-19
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                       
Query: 41  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
           |||| ||||||||||||||  ||||||    ||||||||||| |||||||||||| ||||
Sbjct: 41  tgcctgtgccggaaggttgacccgaccctgttgccaagaacttcgacccaacggcgagga 100

                                              
Query: 101 gcgacgacggcagctgcctttacaccttttaagca 135
           |||||||||||||||||||||| | ||||||||||
Sbjct: 101 gcgacgacggcagctgcctttaaaacttttaagca 135
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                           
Query: 41      tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
               |||| ||||||||||||||||||||||    |||||| ||||  ||||||||||| | ||
Sbjct: 4541319 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 4541378

                                                  
Query: 101     gcgacgacggcagctgcctttacaccttttaagca 135
               || ||||| ||| ||||||||||||||| ||||||
Sbjct: 4541379 gcaacgacagcatctgcctttacaccttctaagca 4541413



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 98       ggagcgacgacggcagctg 116
                |||||||||||||||||||
Sbjct: 13186128 ggagcgacgacggcagctg 13186146
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 41    tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 100
             |||| ||||||||||||||||||||||    |||||| ||||  ||||||||||| | ||
Sbjct: 84693 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 84752

                                                
Query: 101   gcgacgacggcagctgcctttacaccttttaagca 135
             || ||||| ||| ||||||||||||||| ||||||
Sbjct: 84753 gcaacgacagcatctgcctttacaccttctaagca 84787
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 52   gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 111
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1377 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1436

                          
Query: 112  agctgcctttacac 125
            |||||||| |||||
Sbjct: 1437 agctgcctgtacac 1450
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 52   gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 111
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1202 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1261

                          
Query: 112  agctgcctttacac 125
            |||||||| |||||
Sbjct: 1262 agctgcctgtacac 1275
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 52   gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 111
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1076 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1135

                          
Query: 112  agctgcctttacac 125
            |||||||| |||||
Sbjct: 1136 agctgcctgtacac 1149
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 52   gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 111
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1232 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1291

                          
Query: 112  agctgcctttacac 125
            |||||||| |||||
Sbjct: 1292 agctgcctgtacac 1305
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 139     cacttttaatatctgatgttt 159
               |||||||||||||||||||||
Sbjct: 3040420 cacttttaatatctgatgttt 3040440
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 139     cacttttaatatctgatgttt 159
               |||||||||||||||||||||
Sbjct: 3040365 cacttttaatatctgatgttt 3040385
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    cacttttaatatctgatgttt 159
              |||||||||||||||||||||
Sbjct: 114423 cacttttaatatctgatgttt 114403
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tgcataggaggaggtaaagg 23
             ||||||||||||||||||||
Sbjct: 46378 tgcataggaggaggtaaagg 46359
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    tgcataggaggaggtaaagg 23
            ||||||||||||||||||||
Sbjct: 1656 tgcataggaggaggtaaagg 1637
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tgcataggaggaggtaaagg 23
             ||||||||||||||||||||
Sbjct: 32964 tgcataggaggaggtaaagg 32945
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    atgccacttttaatatctga 154
              ||||||||||||||||||||
Sbjct: 141077 atgccacttttaatatctga 141058
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    atgccacttttaatatctga 154
              ||||||||||||||||||||
Sbjct: 142583 atgccacttttaatatctga 142564
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   atgccacttttaatatctga 154
             ||||||||||||||||||||
Sbjct: 95911 atgccacttttaatatctga 95930
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 99   gagcgacgacggcagctgcctttacacc 126
            |||||||||||||||| |||| ||||||
Sbjct: 5133 gagcgacgacggcagcagcctgtacacc 5160
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tgcataggaggaggtaaagg 23
             ||||||||||||||||||||
Sbjct: 34681 tgcataggaggaggtaaagg 34662
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tacaccttttaagcatgcca 140
             ||||||||||||||||||||
Sbjct: 78254 tacaccttttaagcatgcca 78235
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 11  gaggaggtaaaggagcacagcaag 34
           |||||||||||||||| |||||||
Sbjct: 625 gaggaggtaaaggagcccagcaag 648
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tgcataggaggaggtaaagg 23
             ||||||||||||||||||||
Sbjct: 27736 tgcataggaggaggtaaagg 27755
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    agcatgccacttttaatatctgat 155
              |||||| |||||||||||||||||
Sbjct: 127852 agcatggcacttttaatatctgat 127875
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>gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal RNA gene, partial
           sequence
          Length = 1463

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 ttaatatctgatgttttac 162
           |||||||||||||||||||
Sbjct: 165 ttaatatctgatgttttac 183
to top
>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence
          Length = 181948

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 151    ctgatgttttacctaccta 169
              |||||||||||||||||||
Sbjct: 151125 ctgatgttttacctaccta 151143
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>gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, complete sequence
          Length = 196776

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     ctgcataggaggaggtaaa 21
             |||||||||||||||||||
Sbjct: 27500 ctgcataggaggaggtaaa 27482
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>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 127    ttttaagcatgccacttttaata 149
              |||||||| ||||||||||||||
Sbjct: 167580 ttttaagcctgccacttttaata 167602
to top
>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   cttttaagcatgccacttt 144
             |||||||||||||||||||
Sbjct: 15925 cttttaagcatgccacttt 15943
to top
>gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome 14, complete sequence
          Length = 171069

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 147    atatctgatgttttaccta 165
              |||||||||||||||||||
Sbjct: 126424 atatctgatgttttaccta 126442
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>emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230-139I21, complete sequence
          Length = 212885

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 141  cttttaatatctgatgttt 159
            |||||||||||||||||||
Sbjct: 3876 cttttaatatctgatgttt 3858
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>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 144   ttaatatctgatgttttac 162
             |||||||||||||||||||
Sbjct: 48513 ttaatatctgatgttttac 48495
to top
>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 130   taagcatgccacttttaatatct 152
             |||||||||||||||||| ||||
Sbjct: 51546 taagcatgccacttttaacatct 51524
to top
>gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, complete sequence
          Length = 232012

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 14     gaggtaaaggagcacagcaaggt 36
              ||||||| |||||||||||||||
Sbjct: 122201 gaggtaagggagcacagcaaggt 122179
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>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 127    ttttaagcatgccacttttaata 149
              |||||||| ||||||||||||||
Sbjct: 193386 ttttaagcctgccacttttaata 193364
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>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22,
              complete sequence
          Length = 191642

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 151    ctgatgttttacctaccta 169
              |||||||||||||||||||
Sbjct: 151059 ctgatgttttacctaccta 151077
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 163     ctacctaagtccgcatcgc 181
               |||||||||||||||||||
Sbjct: 2937469 ctacctaagtccgcatcgc 2937451
to top
>dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930027O03 product:weakly similar to L1
           RETROTRANSPOSON, TF SUBFAMILY L1MD-TF29, PARTIAL
           SEQUENCE [Mus musculus domesticus], full insert sequence
          Length = 4205

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 taatatctgatgttttacc 163
           |||||||||||||||||||
Sbjct: 694 taatatctgatgttttacc 712
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>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence
          Length = 157417

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 142   ttttaatatctgatgtttt 160
             |||||||||||||||||||
Sbjct: 68519 ttttaatatctgatgtttt 68501
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>gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosome 14, complete sequence
          Length = 212894

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 147    atatctgatgttttaccta 165
              |||||||||||||||||||
Sbjct: 200318 atatctgatgttttaccta 200300
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>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete
             sequence
          Length = 178780

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     ctgcataggaggaggtaaa 21
             |||||||||||||||||||
Sbjct: 34328 ctgcataggaggaggtaaa 34346
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>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete
             sequence
          Length = 177886

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 145   taatatctgatgttttacc 163
             |||||||||||||||||||
Sbjct: 55708 taatatctgatgttttacc 55690
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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 142    ttttaatatctgatgtttt 160
              |||||||||||||||||||
Sbjct: 109413 ttttaatatctgatgtttt 109395
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>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0055N01
          Length = 154783

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   ggagcgacgacggcagctg 116
            |||||||||||||||||||
Sbjct: 7562 ggagcgacgacggcagctg 7580
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     ggagcgacgacggcagctg 116
              |||||||||||||||||||
Sbjct: 108218 ggagcgacgacggcagctg 108236
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>emb|CR937049.3| CH230-323M7, complete sequence
          Length = 198674

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   cttttaatatctgatgttt 159
             |||||||||||||||||||
Sbjct: 21411 cttttaatatctgatgttt 21429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,306,024
Number of Sequences: 3902068
Number of extensions: 1306024
Number of successful extensions: 91372
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90996
Number of HSP's gapped (non-prelim): 348
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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