ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8b23 |
|---|---|
| Clone Library Name | barley_pub |
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 160 bits (404), Expect(2) = 7e-59 Identities = 72/81 (88%), Positives = 78/81 (96%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRKDT+CI LAD+TCEEPKIRMNK VR NLRVRLGDV+SVHQCPDVKYGKRVHILP+DDT Sbjct: 67 KRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDT 126 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEG+TGNLFDA+LKPYFLEAY Sbjct: 127 VEGVTGNLFDAYLKPYFLEAY 147 Score = 86.3 bits (212), Expect(2) = 7e-59 Identities = 40/52 (76%), Positives = 47/52 (90%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAILERKKSPNRLVVDEA NDDNSVV+LHP ME+ QLFRGDT+L+KG +++ Sbjct: 18 TAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRK 69
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 160 bits (404), Expect(2) = 9e-59 Identities = 72/81 (88%), Positives = 78/81 (96%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRKDT+CI LAD+TCEEPKIRMNK VR NLRVRLGDV+SVHQCPDVKYGKRVHILP+DDT Sbjct: 67 KRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDT 126 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEG+TGNLFDA+LKPYFLEAY Sbjct: 127 VEGVTGNLFDAYLKPYFLEAY 147 Score = 85.9 bits (211), Expect(2) = 9e-59 Identities = 40/52 (76%), Positives = 47/52 (90%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAILERKKSPNRLVVDEA NDDNSVV+LHP ME+ QLFRGDT+L+KG +++ Sbjct: 18 TAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRK 69
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 160 bits (404), Expect(2) = 9e-59 Identities = 74/81 (91%), Positives = 77/81 (95%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRKDTICI LAD+ CEEPKIRMNK VR NLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT Sbjct: 68 KRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 127 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 +EG+TGNLFDAFLKPYFLEAY Sbjct: 128 IEGVTGNLFDAFLKPYFLEAY 148 Score = 85.9 bits (211), Expect(2) = 9e-59 Identities = 39/52 (75%), Positives = 46/52 (88%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAILERKKSPNRLVVDEA NDDNSVV +HP ME+ QLFRGDT+L+KG +++ Sbjct: 19 TAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRK 70
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 154 bits (388), Expect(2) = 3e-56 Identities = 67/81 (82%), Positives = 77/81 (95%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRKDT+CI LAD+TC+EPKIRMNK VR NLRVRLGDV+SVHQCPDVKYG RVHILP+DDT Sbjct: 68 KRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDT 127 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 +EG++GN+FDA+LKPYFLEAY Sbjct: 128 IEGVSGNIFDAYLKPYFLEAY 148 Score = 83.6 bits (205), Expect(2) = 3e-56 Identities = 38/52 (73%), Positives = 47/52 (90%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAILE+KK+ NRLVVDEA NDDNSVV+LHPD ME+ QLFRGDT+L+KG +++ Sbjct: 19 TAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGKKRK 70
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 154 bits (389), Expect(2) = 3e-56 Identities = 71/81 (87%), Positives = 77/81 (95%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRKDT+ I LAD+TC+EPKIRMNK VR NLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT Sbjct: 68 KRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 127 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 +EG+TG+LFDAFLKPYFLEAY Sbjct: 128 IEGLTGDLFDAFLKPYFLEAY 148 Score = 83.2 bits (204), Expect(2) = 3e-56 Identities = 39/52 (75%), Positives = 46/52 (88%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAILERKK+ NRLVVDEA NDDNSVVALHP ME+ QLFRGDT+L+KG +++ Sbjct: 19 TAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTILIKGKKRK 70
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 141 bits (355), Expect(2) = 4e-48 Identities = 61/81 (75%), Positives = 73/81 (90%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KR++ +CIVL+DDTC + KIRMN+ VR NLRVRLGDV+S+ CPDVKYGKR+H+LPIDDT Sbjct: 62 KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDT 121 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEGITGNLF+ +LKPYFLEAY Sbjct: 122 VEGITGNLFEVYLKPYFLEAY 142 Score = 69.3 bits (168), Expect(2) = 4e-48 Identities = 33/51 (64%), Positives = 41/51 (80%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 TAIL++K PNRL+VDEA N+DNSVV+L M+ QLFRGDTVLLKG ++ Sbjct: 13 TAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKR 63
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 141 bits (355), Expect(2) = 4e-48 Identities = 61/81 (75%), Positives = 73/81 (90%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KR++ +CIVL+DDTC + KIRMN+ VR NLRVRLGDV+S+ CPDVKYGKR+H+LPIDDT Sbjct: 62 KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDT 121 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEGITGNLF+ +LKPYFLEAY Sbjct: 122 VEGITGNLFEVYLKPYFLEAY 142 Score = 69.3 bits (168), Expect(2) = 4e-48 Identities = 33/51 (64%), Positives = 41/51 (80%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 TAIL++K PNRL+VDEA N+DNSVV+L M+ QLFRGDTVLLKG ++ Sbjct: 13 TAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKR 63
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 141 bits (355), Expect(2) = 4e-48 Identities = 61/81 (75%), Positives = 73/81 (90%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KR++ +CIVL+DDTC + KIRMN+ VR NLRVRLGDV+S+ CPDVKYGKR+H+LPIDDT Sbjct: 62 KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDT 121 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEGITGNLF+ +LKPYFLEAY Sbjct: 122 VEGITGNLFEVYLKPYFLEAY 142 Score = 69.3 bits (168), Expect(2) = 4e-48 Identities = 33/51 (64%), Positives = 41/51 (80%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 TAIL++K PNRL+VDEA N+DNSVV+L M+ QLFRGDTVLLKG ++ Sbjct: 13 TAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKR 63
>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) Length = 805 Score = 141 bits (356), Expect(2) = 8e-48 Identities = 62/81 (76%), Positives = 73/81 (90%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KR++ +CIVL+DDTC + KIRMN+ VR NLRVRLGDV+S+ CPDVKYGKRVH+LPIDDT Sbjct: 63 KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRVHVLPIDDT 122 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEGITGNLF+ +LKPYFLEAY Sbjct: 123 VEGITGNLFEVYLKPYFLEAY 143 Score = 67.8 bits (164), Expect(2) = 8e-48 Identities = 32/51 (62%), Positives = 41/51 (80%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 TAIL++K PNRL+VDE+ N+DNSVV+L M+ QLFRGDTVLLKG ++ Sbjct: 14 TAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLKGKKR 64
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 139 bits (350), Expect(2) = 1e-47 Identities = 60/81 (74%), Positives = 72/81 (88%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KR++ +CIVL+DDTC + KIRMN+ VR NLRV LGDV+S+ CPDVKYGKR+H+LPIDDT Sbjct: 62 KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDT 121 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEGITGNLF+ +LKPYFLEAY Sbjct: 122 VEGITGNLFEVYLKPYFLEAY 142 Score = 69.3 bits (168), Expect(2) = 1e-47 Identities = 33/51 (64%), Positives = 41/51 (80%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 TAIL++K PNRL+VDEA N+DNSVV+L M+ QLFRGDTVLLKG ++ Sbjct: 13 TAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKR 63
>CDC48_YEAST (P25694) Cell division control protein 48| Length = 835 Score = 121 bits (303), Expect(2) = 1e-41 Identities = 53/81 (65%), Positives = 66/81 (81%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRKDT+ IVL DD E+ R+N+ VR NLR+RLGD+V++H CPD+KY R+ +LPI DT Sbjct: 73 KRKDTVLIVLIDDELEDGACRINRVVRNNLRIRLGDLVTIHPCPDIKYATRISVLPIADT 132 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 +EGITGNLFD FLKPYF+EAY Sbjct: 133 IEGITGNLFDVFLKPYFVEAY 153 Score = 67.8 bits (164), Expect(2) = 1e-41 Identities = 30/52 (57%), Positives = 43/52 (82%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAIL RKK N L+VD+A NDDNSV+A++ + M++ +LFRGDTVL+KG +++ Sbjct: 24 TAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVKGKKRK 75
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 113 bits (283), Expect(2) = 1e-40 Identities = 48/81 (59%), Positives = 67/81 (82%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 +RKDT+ IVL D+ E+ R+N+ VR NLRVRLGD+V+++ CPD+KY +R+ +LP+ DT Sbjct: 83 RRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADT 142 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 VEG+TG+LFD +LKPYF+EAY Sbjct: 143 VEGLTGSLFDVYLKPYFVEAY 163 Score = 72.0 bits (175), Expect(2) = 1e-40 Identities = 35/68 (51%), Positives = 44/68 (64%) Frame = +3 Query: 3 QGEAXXXXXXXXXXXXTAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTV 182 QGE TAIL +K+ PN LVVD+ATNDDNSV+ L + ME QLFRGDTV Sbjct: 18 QGENPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTV 77 Query: 183 LLKGNEKE 206 ++KG ++ Sbjct: 78 VVKGKRRK 85
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1| (p97/CDC48 homolog 1) Length = 809 Score = 123 bits (308), Expect(2) = 1e-39 Identities = 51/81 (62%), Positives = 69/81 (85%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KRK+++ I+++D++C K+RMN+ VR NLR+RLGDVVS+ P++ YG R+H+LPIDDT Sbjct: 69 KRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDT 128 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 +EG+TGNLFD FLKPYFLEAY Sbjct: 129 IEGLTGNLFDVFLKPYFLEAY 149 Score = 58.9 bits (141), Expect(2) = 1e-39 Identities = 27/52 (51%), Positives = 38/52 (73%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEKE 206 TAIL+ K PNRL+VD++ DDNSV+A+ M+ LFRGD V+LKG +++ Sbjct: 20 TAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRK 71
>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2| (p97/CDC48 homolog 2) Length = 810 Score = 112 bits (279), Expect(2) = 4e-37 Identities = 52/81 (64%), Positives = 64/81 (79%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 KR++T+ IVL D C KI+MNK VR NLR RLGDVVS+ ++YGKRVH+LPIDDT Sbjct: 69 KRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDT 127 Query: 379 VEGITGNLFDAFLKPYFLEAY 441 +EG+TGNLFD FL+PYF +AY Sbjct: 128 IEGLTGNLFDVFLRPYFTDAY 148 Score = 61.6 bits (148), Expect(2) = 4e-37 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +3 Query: 51 TAILERKKSPNRLVVDEATNDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 TAIL+ KK PNRL++D++ NDDNS+V L M+ LFRGD+V+LKG ++ Sbjct: 20 TAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKR 70
>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase| Length = 1229 Score = 37.4 bits (85), Expect(2) = 2e-04 Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +1 Query: 199 KRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 378 K+++ + I D + ++ + ++ ++KNLR+ D++ +H + K + V + P DT Sbjct: 380 KKREMLGIARLDRSLKKHYVVISFAMKKNLRLMHNDIIKIHPFMNAKRIRNVVLSPFSDT 439 Query: 379 VEGIT-GNLFDAFLKPYFLEAY 441 + ++ L A + PY +Y Sbjct: 440 IPNLSREELEKAVIHPYLKNSY 461 Score = 25.8 bits (55), Expect(2) = 2e-04 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 60 LERKKSPNRLVVDEAT-NDDNSVVALHPDXMERXQLFRGDTVLLKGNEK 203 L+ K P +V+ N DN + + + M+ + G TVLLKG +K Sbjct: 333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKK 381
>LEXA_PECCC (Q04596) LexA repressor (EC 3.4.21.88)| Length = 202 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = +1 Query: 256 IRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 381 +R++ KN+ + GD+++VH+ DV+ G+ V + IDD V Sbjct: 113 LRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIV-VARIDDEV 153
>LEXA_ERWCT (Q6D9I5) LexA repressor (EC 3.4.21.88)| Length = 202 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = +1 Query: 256 IRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 381 +R++ KN+ + GD+++VH+ DV+ G+ V + IDD V Sbjct: 113 LRVSGMSMKNIGIMDGDLLAVHKTEDVRNGQIV-VARIDDEV 153
>ISPG_PROAC (Q6A7L2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 380 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = +1 Query: 208 DTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEG 387 DTI + L+ D EE K+ + NLR R ++VS C + + D +EG Sbjct: 244 DTIRVSLSADPVEEVKVGIKILESLNLRPRGLEIVSCPSCGRCQVDVLTLANDVTDALEG 303 Query: 388 ITGNL 402 I L Sbjct: 304 IDAPL 308
>ADA1A_ORYLA (Q91175) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (MAR1) Length = 470 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/30 (53%), Positives = 18/30 (60%) Frame = -3 Query: 226 AQCRLYPSFSLPLSRTVSPRKSWXLSMXSG 137 A CRL PS S+ LSRT S R S + SG Sbjct: 376 APCRLSPSSSVALSRTPSSRDSREWRVFSG 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,236,813 Number of Sequences: 219361 Number of extensions: 886157 Number of successful extensions: 2612 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2610 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
