>ZBT40_HUMAN (Q9NUA8) Zinc finger and BTB domain-containing protein 40|
          Length = 1239

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +3

Query: 351 LNKVQTTASWRKASKSSTGGTFSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERN 530
           L K+Q +A+    +   +   +  +  RRY++ + + F D Q  ++ I HM S+   ER 
Sbjct: 440 LEKLQKSATLPSTTVQPSPDDYGTELLRRYHENLSEIFTDNQILLKMISHMTSLAPGERE 499

Query: 531 KFRKSYESWKENGPPGGYN 587
              K     K +   GG+N
Sbjct: 500 VMEKLV---KRDSGSGGFN 515

>YJM3_YEAST (P47018) Hypothetical 53.5 kDa protein in GCD14-POS18 intergenic|
           region
          Length = 478

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 375 SWRKASKSSTGGTFSDDARRRYYQRMQQEFEDEQE 479
           +W + S   TG T S++  + Y Q+ Q+E EDE E
Sbjct: 407 NWLEGSVEKTGSTASEERNKSYDQKKQKESEDEDE 441

>M21_STRPY (P50468) M protein, serotype 2.1 precursor|
          Length = 407

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 417 SDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNK 533
           S+D  R Y +++ QE++++QER + +  ++    RE  K
Sbjct: 103 SEDVERHYLRQLDQEYKEQQERQKNLEELERQSQREVEK 141

>CCD46_MOUSE (Q5PR68) Coiled coil domain containing protein 46|
          Length = 954

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 390 SKSSTGGTFSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRKSYE 551
           S S T G   ++  +   Q  QQ  E E +R Q+++  ++ F+ E+N  + +YE
Sbjct: 497 STSKTSGVI-EELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYE 549

>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC 3.6.1.-)|
          Length = 1129

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = +3

Query: 414  FSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRKSYESWKENGPPGGYN 587
            +S+  R   Y++  +  E+E+E+++R++  Q    R+ ++++  +   K   PP   N
Sbjct: 931  WSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNN 988

>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +3

Query: 390 SKSSTGGTFSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNK-------FRKSY 548
           SK+     ++  +++++  +MQQ+F+ +Q+   + R+ QS  N   N        +RK +
Sbjct: 3   SKNQFYQNWTMQSQQQHPHQMQQQFQQQQQPNLQHRNNQSNNNNCNNNPRAAAAPYRKPF 62

Query: 549 ESWKENGPPGG 581
            S K N  PGG
Sbjct: 63  RSGKINSGPGG 73

>Y096_MYCGE (P47342) Hypothetical protein MG096|
          Length = 650

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +3

Query: 420 DDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRKSYESWKE 563
           ++ R+R  + +++   +E+ + +  +  Q    RER  + KS+ S+K+
Sbjct: 347 EEERKRQLEELRRREAEEKRKAEEAKRNQEKARREREAYEKSFNSFKD 394

>REN3B_HUMAN (Q9BZI7) Regulator of nonsense transcripts 3B (Nonsense mRNA|
           reducing factor 3B) (Up-frameshift suppressor 3 homolog
           B) (hUpf3B) (hUpf3p-X)
          Length = 483

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 420 DDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRKSYESWK 560
           +D   R Y+  ++E+E +QER+ R R        ER + ++ YE  K
Sbjct: 338 EDESGRDYREREREYERDQERILRERERLKRQEEERRRQKERYEKEK 384

>GIDA_CLOTE (Q899S1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 623

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/81 (27%), Positives = 35/81 (43%)
 Frame = +3

Query: 363 QTTASWRKASKSSTGGTFSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRK 542
           Q  A  R   K    G  S++  +RY  R     E  +  ++RI+++Q    +E N+F  
Sbjct: 441 QGNADLRLTQKGYDVGLVSEERYKRYINRR----ESIKSEIERIKNVQITNKKEVNEFLL 496

Query: 543 SYESWKENGPPGGYNYIPRDD 605
           S  S +   P   Y  I R +
Sbjct: 497 SLNSSELKKPISLYELIKRPE 517

>VSID_BPP4 (P05461) Glycoprotein 3 (Capsid size determination protein)|
          Length = 244

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +3

Query: 378 WRKASKSSTGGTFSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRKSYES 554
           WR A +++ GG  SD+ ++R+ +R+ +     +E VQ   ++  V N ER + + + +S
Sbjct: 59  WRTAFRAA-GGVLSDELKQRHIERVAR-----RELVQEYDNLAVVLNFERERLKGACDS 111

>T22D4_MOUSE (Q9EQN3) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2)
          Length = 387

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 186 ASPPPRIPISRFELDAGGRGRPGSCFPRP 100
           A PPPR+P      D GGRG P +  P P
Sbjct: 37  AGPPPRLPNGDPNPDPGGRGTPRNGSPPP 65

>DREB_RAT (Q07266) Drebrin (Developmentally-regulated brain protein)|
          Length = 706

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 423 DARRRYYQ-RMQQEFEDEQERVQRIRHMQSVFNRERNK 533
           DAR R+ Q RM+QE ++++ER +R R  +      R K
Sbjct: 200 DARLRFEQERMEQERQEQEERERRYREREQQIEEHRRK 237

>DREB_MOUSE (Q9QXS6) Drebrin (Developmentally-regulated brain protein)|
          Length = 705

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 423 DARRRYYQ-RMQQEFEDEQERVQRIRHMQSVFNRERNK 533
           DAR R+ Q RM+QE ++++ER +R R  +      R K
Sbjct: 200 DARLRFEQERMEQERQEQEERERRYREREQQIEEHRRK 237

>SYA_NOCFA (Q5YTJ9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 888

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +3

Query: 369 TASWRKASKSSTGGTFSDDARRRYYQRMQQEFEDEQERVQRIRHMQSVFNRERNKFRKSY 548
           T +W   SK  + G F  D  R +       ++D+ E  + I H  +   +ER +FR   
Sbjct: 102 TLAWELISKPQSEGGFGFDPERIWVTA----YQDDPEAAE-IWHRMAGIPKERIQFRDGK 156

Query: 549 ESWKENGPPG 578
           +++ + G PG
Sbjct: 157 DNYWDMGVPG 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,174,929
Number of Sequences: 219361
Number of extensions: 1354918
Number of successful extensions: 5498
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5490
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)