ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7m12 |
|---|---|
| Clone Library Name | barley_pub |
>DVL3_MOUSE (Q61062) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 33.5 bits (75), Expect = 0.36 Identities = 32/120 (26%), Positives = 46/120 (38%) Frame = +3 Query: 126 DRRKGGTGLESELWWI*TESGTRKGSEISMKASSSMAGDASGNTDPGQQGVRFSSMDQSC 305 D + GG+G ES+ T S R E +A S +G A+ SS+ +S Sbjct: 595 DSKSGGSGSESDHT---TRSSLRGPRE---RAPSERSGPAASEHSHRSHHSLTSSL-RSH 647 Query: 306 FARPGQSIPGYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIADWDPQAMLSNLTF 485 P PG PP +GP P ++G P P +A P+ S +F Sbjct: 648 HTHPSYGPPGVPPLYGPPMLMMTPPPGAMG------PPGAPPGRDLASVPPELTASRQSF 701
>DVL3_HUMAN (Q92997) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 32.7 bits (73), Expect = 0.62 Identities = 32/120 (26%), Positives = 46/120 (38%) Frame = +3 Query: 126 DRRKGGTGLESELWWI*TESGTRKGSEISMKASSSMAGDASGNTDPGQQGVRFSSMDQSC 305 D + GG+G ES+ T S R E +A S +G A+ SS+ +S Sbjct: 595 DSKSGGSGSESDHT---TRSSLRGPRE---RAPSERSGPAASEHSHRSHHSLASSL-RSH 647 Query: 306 FARPGQSIPGYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIADWDPQAMLSNLTF 485 P PG PP +GP P ++G P P +A P+ S +F Sbjct: 648 HTHPSYGPPGVPPLYGPPMLMMPPPPAAMG------PPGAPPGRDLASVPPELTASRQSF 701
>BCL3_HUMAN (P20749) B-cell lymphoma 3-encoded protein (Protein Bcl-3)| Length = 446 Score = 32.7 bits (73), Expect = 0.62 Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Frame = +3 Query: 240 DASGNTDPGQQGVRFSS---MDQSCFARPGQSIPGYPPFFGPQSSNFYLPDDS------- 389 D S NT P + R SS + S + P QS P PP F NF+LP S Sbjct: 368 DRSANTSP-ESSSRLSSNGLLSASPSSSPSQSPPRDPPGFPMAPPNFFLPSPSPPAFLPF 426 Query: 390 VGKACDPFEPNPPVNEP 440 G P P PP P Sbjct: 427 AGVLRGPGRPVPPSPAP 443
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 31.6 bits (70), Expect = 1.4 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Frame = +3 Query: 204 EISMKASSSMAGDASGNTDPGQQGV-----------RFSSMDQSCFARPGQSIPGYPPFF 350 + S+ S G+ G G++ V + S + F PG ++P P Sbjct: 912 DFSVTGESEKKGETVGRGLSGEKAVGKEEKYVVTSEKLSGQYAAVFGAPGHTLPPGEPAL 971 Query: 351 GPQSSNFYLPDDSVGKACDPFEPNPP 428 G PDDS K P PP Sbjct: 972 GEVEERCLSPDDSTVKMASPPPSGPP 997
>MMP8_MOUSE (O70138) Neutrophil collagenase precursor (EC 3.4.24.34) (Matrix| metalloproteinase-8) (MMP-8) (Collagenase 2) Length = 465 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 246 SGNTDPGQ-QGVRFSSMDQSCFARPGQSIPGYPPFFGPQSSNFYLPDDSVGKACDP 410 S +TDPG ++ + S ++ P I G +GP + S KACDP Sbjct: 226 SHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPIQPTGPSTPKACDP 281
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 22/108 (20%) Frame = +3 Query: 204 EISMKASSSMAGDASGNTDPGQQGVRFSSMDQSCFARPGQSIPGYPPFFGPQSS------ 365 E + + G A +PG G+ S+ ++ PG+ PG+P G + S Sbjct: 1134 EAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEQGVPGRGFPGFPGSKGDKGSKGEVGF 1193 Query: 366 ----------------NFYLPDDSVGKACDPFEPNPPVNEPIADWDPQ 461 F P G+ P P PV P D PQ Sbjct: 1194 PGLAGSPGIPGVKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQ 1241
>CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (Cx44)| Length = 412 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = +3 Query: 261 PGQQGVRFSSMDQSCFARPGQSIP-----GYPPFFGPQSSNFYLPDDSVGKACDPFEPNP 425 PG + M S P S P G+PP++ P +S S+G+A P P P Sbjct: 239 PGSRAGSAKPMGGSPLLLPPNSAPPAVTIGFPPYYAPSAS-------SLGQASAPGYPEP 291 Query: 426 PV 431 P+ Sbjct: 292 PL 293
>CTGE5_HUMAN (O15320) Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5| protein) (cTAGE family member 5) (Meningioma-expressed antigen 6/11) (MEA6/MEA11) Length = 804 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 333 GYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIAD 449 G+PP+ P+ F P S G++ P PP NEP + Sbjct: 758 GFPPYLPPRPGFFPPPPHSEGRSEFPSGLIPPSNEPATE 796
>CYPC_STRCN (Q02572) Putative polyketide cyclase| Length = 152 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Frame = -2 Query: 402 KLYPHCHQEGKSWKIEGQRTEDNQGLTGQVLQSKTGP-------WN*NEHPVGQGLCSLT 244 +L H + GK W +RT D + L + + +TGP W E P G Sbjct: 51 RLTMHPDENGKVWSWVSERTADREKLVVRARRVETGPFEYMNIVWEYEETPDG------- 103 Query: 243 RRLPWTTKLSWK 208 R+ WT + K Sbjct: 104 TRMHWTQDFAMK 115
>CTTB2_HORSE (Q2QLA2) Cortactin-binding protein 2 (CortBP2)| Length = 1665 Score = 29.3 bits (64), Expect = 6.9 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Frame = -1 Query: 352 PKNGG*PGIDWPGLAKQDWS----MELKRTPCWPGSVFPDASPAMDDEAFM---EISEPF 194 P N P + PG+A Q +S M +PC S+ P +P + F ++P Sbjct: 402 PNNAAPPTVQTPGVAPQSYSQASPMHSLHSPCANASLHPGLNPRIQAARFRFQGNANDPD 461 Query: 193 LVPLSVQIHQSSDSSPVPPFLLSHAIVSKREIDNKTGKASNPQ 65 + Q S D SP L +++ + + ++PQ Sbjct: 462 QNGNTTQSPPSRDVSPTSRENLVAKQLARNTVTQALSRFTSPQ 504
>ZIP3_ARATH (Q9SLG3) Zinc transporter 3 precursor (ZRT/IRT-like protein 3)| Length = 339 Score = 29.3 bits (64), Expect = 6.9 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Frame = -1 Query: 256 VFPDA-----SPAMDDEAFMEISEPFLVPLSVQIHQSSDSSPVPPFLLSHAIVSKREIDN 92 V P+A SP + EA+ F+ ++ + S D+ F SH SKR D Sbjct: 107 VLPEAYEMLNSPCLTSEAWEFPFTGFIAMIAAILTLSVDTFATSSFYKSHCKASKRVSDG 166 Query: 91 KTGKAS 74 +TG++S Sbjct: 167 ETGESS 172
>DNAE2_PROAC (Q6A780) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1134 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +3 Query: 321 QSIPGYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIADWDPQ 461 Q + G P G S+ L + VG+ C P EP + WD + Sbjct: 536 QQVMGLPRHLGIHSAGMVLTREPVGRIC-PIEPARMFGRTVLQWDKE 581
>MMP3_HUMAN (P08254) Stromelysin-1 precursor (EC 3.4.24.17) (Matrix| metalloproteinase-3) (MMP-3) (Transin-1) (SL-1) Length = 477 Score = 28.9 bits (63), Expect = 9.0 Identities = 30/126 (23%), Positives = 44/126 (34%) Frame = +3 Query: 138 GGTGLESELWWI*TESGTRKGSEISMKASSSMAGDASGNTDPGQQGVRFSSMDQSCFARP 317 G + + W +GT + + S+ S NT+ + S D + F Sbjct: 193 GDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLS 252 Query: 318 GQSIPGYPPFFGPQSSNFYLPDDSVGKACDPFEPNPPVNEPIADWDPQAMLSNLTFLEQK 497 I G +GP P DS P EP PP A+ DP ++ L + Sbjct: 253 QDDINGIQSLYGP-------PPDSPETPLVPTEPVPPEPGTPANCDPALSFDAVSTLRGE 305 Query: 498 IKQVKD 515 I KD Sbjct: 306 ILIFKD 311
>CRYD_GIBZE (Q4I1Q6) Putative crytochrome DASH| Length = 678 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +3 Query: 324 SIPGYPPFFGPQSSNFYLPDDSVGKACDPFEP--NPPVNEPIADWDPQ 461 S+P +P + PQ + F +PDD D FE PV PI PQ Sbjct: 189 SLPSFPSWIPPQQAPFRIPDD-----YDEFERLLLEPVKAPIISDPPQ 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,133,421 Number of Sequences: 219361 Number of extensions: 1589229 Number of successful extensions: 4747 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4741 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
