ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 172 bits (87), Expect = 5e-40 Identities = 213/251 (84%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcgcc-gttgccggac 128 |||| |||||||||||||||||| |||||||| ||||||| ||||| | || | ||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgtttta-tcgtttgttttcgtctgtagtcggac 60 Query: 129 cctgctcttctacatggtgactgaatgtattgatgtattgtgatgttcatgatt-agctt 187 ||||||||||| ||| ||| ||||||| ||| ||||||| ||| |||||||| ||||| Sbjct: 61 cctgctcttctgtatgatgattgaatgtgttgttgtattgatatgatcatgatttagctt 120 Query: 188 gtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaata 247 ||||||||||||| |||||||||||||||||| |||| | |||||||| |||||| ||| Sbjct: 121 gtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatgata 180 Query: 248 tccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgcaaaaat 307 ||||||| | | |||| ||||||||| ||| |||||||| |||||| ||| || ||||| Sbjct: 181 tccattcttgcgaaacgacgagatgcgcttctatccctattgaggccctcgagccaaaat 240 Query: 308 aaggttaggat 318 |||| |||||| Sbjct: 241 aaggataggat 251
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 151 bits (76), Expect = 2e-33 Identities = 212/253 (83%), Gaps = 7/253 (2%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| || ||||| ||||||| ||||| |||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgttgtttta-tcgtttgttttcgtccgtagccggac 60 Query: 129 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 185 ||||||||||| ||| ||| || || ||||||||||||| |||| || || |||| Sbjct: 61 cctgctcttctgtatgatgattgtatatattgatgtattgatgtgatattgttg--tagc 118 Query: 186 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 245 ||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||| | Sbjct: 119 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 178 Query: 246 tatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgcaaaa 305 ||||||||| | | | || ||||||||| ||| |||||| |||||||| |||||| ||| Sbjct: 179 tatccattcttgcgacacgacgagatgcgcttctatccctgtcgaggccctcgtgccaaa 238 Query: 306 ataaggttaggat 318 |||||| |||||| Sbjct: 239 ataagggtaggat 251
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 135 bits (68), Expect = 1e-28 Identities = 210/253 (83%), Gaps = 7/253 (2%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| ||| |||| ||||||| ||||| |||| | ||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcatttta-tcgtttgttttcgtccgtagtcggac 60 Query: 129 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 185 ||||||||||| ||| || || || | ||| ||||||| |||| || ||| |||| Sbjct: 61 cctgctcttctgtatgatgtttgtatttgttgttgtattgatgtgatattgatg--tagc 118 Query: 186 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 245 ||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||| | Sbjct: 119 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 178 Query: 246 tatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgcaaaa 305 ||||||||| | ||| || ||||||||| ||| |||||| |||||||| |||||| ||| Sbjct: 179 tatccattcttgcaacacgacgagatgcgcttctatccctgtcgaggccctcgtgccaaa 238 Query: 306 ataaggttaggat 318 |||||| |||||| Sbjct: 239 ataaggataggat 251
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 135 bits (68), Expect = 1e-28 Identities = 211/253 (83%), Gaps = 8/253 (3%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| || ||||| ||||||| ||||| |||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgttgtttta-tcgtttgttttcgtccgtagccggac 60 Query: 129 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 185 ||||||||||| ||| ||| || | ||||||||||||| |||| || || |||| Sbjct: 61 cctgctcttctgtatgatgattgt-tatattgatgtattgatgtgatattgttg--tagc 117 Query: 186 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 245 ||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||| | Sbjct: 118 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 177 Query: 246 tatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgcaaaa 305 ||||||||| | | | || ||||||||| ||| |||||| |||||||| |||||| ||| Sbjct: 178 tatccattcttgcgacacgacgagatgcgcttctatccctgtcgaggccctcgtgccaaa 237 Query: 306 ataaggttaggat 318 |||||| |||||| Sbjct: 238 ataagggtaggat 250
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 135 bits (68), Expect = 1e-28 Identities = 211/253 (83%), Gaps = 8/253 (3%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| || ||||| ||||||| ||||| |||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgttgtttta-tcgtttgttttcgtccgtagccggac 60 Query: 129 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 185 ||||||||||| ||| ||| || | ||||||||||||| |||| || || |||| Sbjct: 61 cctgctcttctgtatgatgattgt-tatattgatgtattgatgtgatattgttg--tagc 117 Query: 186 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 245 ||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||| | Sbjct: 118 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 177 Query: 246 tatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgcaaaa 305 ||||||||| | | | || ||||||||| ||| |||||| |||||||| |||||| ||| Sbjct: 178 tatccattcttgcgacacgacgagatgcgcttctatccctgtcgaggccctcgtgccaaa 237 Query: 306 ataaggttaggat 318 |||||| |||||| Sbjct: 238 ataagggtaggat 250
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||| Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 174 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 | |||||||||| | | ||| ||||||||| ||| |||||| |||||||| |||||| Sbjct: 175 atgatatccattcttgcgaaatgacgagatgcgcttctatccctgtcgaggccctcgtgc 234 Query: 302 aaaaataaggttaggat 318 ||||||||| |||||| Sbjct: 235 caaaataaggataggat 251
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||| Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 174 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 | |||||||||| | | ||| ||||||||| ||| |||||| |||||||| |||||| Sbjct: 175 atgatatccattcttgcgaaatgacgagatgcgcttctatccctgtcgaggccctcgtgc 234 Query: 302 aaaaataaggttaggat 318 ||||||||| |||||| Sbjct: 235 caaaataaggataggat 251
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||| Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 174 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 | |||||||||| | | | || ||||||||| ||| |||||| |||||||| |||||| Sbjct: 175 atgatatccattcttgcgacacgacgagatgcgcttctatccctgtcgaggccctcgtgc 234 Query: 302 aaaaataaggttaggat 318 ||||||||| |||||| Sbjct: 235 caaaataaggataggat 251 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttt 101 |||| |||||||||||||||||| ||| |||| Sbjct: 2 cagcctgggatagcaaggatggatgtcatttt 33
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 119 bits (60), Expect = 7e-24 Identities = 208/253 (82%), Gaps = 7/253 (2%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| ||| |||| ||||||| ||||| |||| | |||| Sbjct: 2 cagcctgggatagcaaggatggatgtcatttta-tcgtttgttttcgtccgtagatggac 60 Query: 129 cctgctcttctacatggtgactgaatgtattgatgtattg---tgatgttcatgattagc 185 ||||||||||| ||| || |||| | ||| ||||||| ||||||| ||| |||| Sbjct: 61 cctgctcttctgtatgatgttcgaatatgttgttgtattgatgtgatgttgatg--tagc 118 Query: 186 ttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgtaacaa 245 ||||||||||||||| |||||||||||||||||| |||| | |||||||| |||||| | Sbjct: 119 ttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgtaatga 178 Query: 246 tatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgcaaaa 305 ||||||||| | | | | ||||||||| ||| |||||| |||||||| |||||| ||| Sbjct: 179 tatccattcttgcgacatgacgagatgcgcttctatccctgtcgaggccctcgtgcgaaa 238 Query: 306 ataaggttaggat 318 |||||| |||||| Sbjct: 239 ataaggataggat 251
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 111 bits (56), Expect = 2e-21 Identities = 117/136 (86%), Gaps = 1/136 (0%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||| Sbjct: 4077 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 4136 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcat-ccctatcgaggccttcgtg 300 | |||||||||| | | | || ||||||||||||| || |||| |||||||| ||||| Sbjct: 4137 atgatatccattcttgcgacacgacgagatgcacttctataccctgtcgaggccctcgtg 4196 Query: 301 caaaaataaggttagg 316 | ||||||||| |||| Sbjct: 4197 ccaaaataaggatagg 4212 Score = 42.1 bits (21), Expect = 1.3 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 51 aggatgggttctaggccgacagcttgggatagcaaggatgg 91 ||||||||||| |||| | |||| ||||||||||||||||| Sbjct: 3946 aggatgggttccaggcgg-cagcctgggatagcaaggatgg 3985
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 109 bits (55), Expect = 6e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | ||| || | ||||| Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacgtgcacttgta 174 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 | |||||||||||| | |||||||||||||| ||| |||||| |||||||| || ||| Sbjct: 175 atgatatccattcctgcgaaacaacgagatgcgcttctatccctgtcgaggccctcatgc 234 Query: 302 aaaaataaggttagg 316 |||||||| |||| Sbjct: 235 cgaaataaggatagg 249 Score = 54.0 bits (27), Expect = 3e-04 Identities = 62/71 (87%), Gaps = 2/71 (2%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| ||| |||| ||||||| ||||| |||| | ||||| Sbjct: 2 cagcctgggatagcaaggatggatgtc-attttatcgtttgttttcgtccgtagtcggac 60 Query: 129 cctgctcttct 139 ||||||||||| Sbjct: 61 cctgctcttct 71
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 109 bits (55), Expect = 6e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | ||| || | ||||| Sbjct: 115 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacgtgcacttgta 174 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 | |||||||||||| | |||||||||||||| ||| |||||| |||||||| || ||| Sbjct: 175 atgatatccattcctgcgaaacaacgagatgcgcttctatccctgtcgaggccctcatgc 234 Query: 302 aaaaataaggttagg 316 |||||||| |||| Sbjct: 235 cgaaataaggatagg 249 Score = 54.0 bits (27), Expect = 3e-04 Identities = 62/71 (87%), Gaps = 2/71 (2%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtttttctcgtttgatttcg-ccgttgccggac 128 |||| |||||||||||||||||| ||| |||| ||||||| ||||| |||| | ||||| Sbjct: 2 cagcctgggatagcaaggatggatgtc-attttatcgtttgttttcgtccgtagtcggac 60 Query: 129 cctgctcttct 139 ||||||||||| Sbjct: 61 cctgctcttct 71
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 109 bits (55), Expect = 6e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||||| Sbjct: 4276 tagcttgtggcgagtgtaagccaattccatatactcatctcttctttacatgtacttgta 4335 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 | |||||||||| | | | || ||||||||| ||| | |||| |||||||| |||||| Sbjct: 4336 atgatatccattcttgcgacacgacgagatgcgcttctacccctgtcgaggccctcgtgc 4395 Query: 302 aaaaataaggttagg 316 ||||||||| |||| Sbjct: 4396 caaaataaggatagg 4410 Score = 61.9 bits (31), Expect = 1e-06 Identities = 79/91 (86%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 50 taggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttctcgttt 109 |||||||||||| |||| | |||| |||||||||||||||||| ||| |||| |||||| Sbjct: 4144 taggatgggttccaggcgg-cagcctgggatagcaaggatggatgtc-attttatcgttt 4201 Query: 110 gatttcg-ccgttgccggaccctgctcttct 139 | ||||| |||| | |||||||||||||||| Sbjct: 4202 gttttcgtccgtagtcggaccctgctcttct 4232
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 99.6 bits (50), Expect = 6e-18 Identities = 82/90 (91%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttctcgtt 108 ||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||| Sbjct: 4033 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcg-ttttctcgtt 4091 Query: 109 tgatttcg-ccgttgccggaccctgctctt 137 || ||||| |||| | |||||||||||||| Sbjct: 4092 tgttttcgtccgtagtcggaccctgctctt 4121 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 227 gtacatgtagttgtaacaatatccattccttcaaaacaacgagatgcactttcatcccta 286 ||||||||| ||||||| |||||||||| | | | || ||||||||| ||| |||||| Sbjct: 4212 gtacatgtacttgtaacgatatccattcttgcgacacgacgagatgcgcttctatccctg 4271 Query: 287 tcgaggccttcgtgc 301 |||||||||||||| Sbjct: 4272 acgaggccttcgtgc 4286
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 93.7 bits (47), Expect = 4e-16 Identities = 128/155 (82%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatatactcatatcttttgtacatgtagttgta 241 ||||||||||||| ||||| |||||||||||||||| | |||| ||||||||| ||||| Sbjct: 2379 tagcttgtggcgattgtaagccaattccatatactcttctcttcagtacatgtacttgta 2438 Query: 242 acaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcgtgc 301 || |||||||||| | | |||| ||||||||| ||| |||||| ||||| | ||| || Sbjct: 2439 acgatatccattcttgcgaaacgacgagatgcgcttctatccctgtcgagacactcgcgc 2498 Query: 302 aaaaataaggttaggattccatcttcggtgttaca 336 ||||||||| | |||| |||||| || |||||| Sbjct: 2499 caaaataaggatgggatcgcatcttgggcgttaca 2533 Score = 81.8 bits (41), Expect = 1e-12 Identities = 87/100 (87%), Gaps = 3/100 (3%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgt--ttttctcg 106 ||||||||||||| ||| || |||| |||||||||||||||||||||||| |||| ||| Sbjct: 2245 ctaggatgggttccaggtcggcagcctgggatagcaaggatggacgtcgttcttttatcg 2304 Query: 107 tttgatttcg-ccgttgccggaccctgctcttctacatgg 145 |||| ||||| ||| | |||||||||||||||| ||||| Sbjct: 2305 tttgttttcgttcgtagtcggaccctgctcttcttcatgg 2344
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 85.7 bits (43), Expect = 9e-14 Identities = 83/95 (87%), Gaps = 6/95 (6%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgt-----ttttc 103 ||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 326999 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttcttttc 327058 Query: 104 tcgtttgatttcg-ccgttgccggaccctgctctt 137 ||||||| ||||| |||| | |||||||||||||| Sbjct: 327059 tcgtttgttttcgtccgtagtcggaccctgctctt 327093 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| ||| || |||| ||||||||||||||||||||||||| |||| Sbjct: 131399 ctaggatgggttccagggcggcagcctgggatagcaaggatggacgtcgttcttct 131454 Score = 50.1 bits (25), Expect = 0.005 Identities = 99/123 (80%), Gaps = 3/123 (2%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatata---ctcatatcttttgtacatgtagtt 238 ||||||||||||||||||| |||| || ||||| ||| | | || ||||||||| || Sbjct: 131531 tagcttgtggcgagtgtaagccaactctatatatatctcttcttttcagtacatgtactt 131590 Query: 239 gtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcg 298 ||||| |||||||||| | | | || ||||||||| | | ||||||| ||||||| ||| Sbjct: 131591 gtaacgatatccattcttgcgacacgacgagatgcgcatctatccctaacgaggccctcg 131650 Query: 299 tgc 301 ||| Sbjct: 131651 tgc 131653 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatata 214 ||||||||||||||||||| |||| || ||||| Sbjct: 327134 tagcttgtggcgagtgtaagccaactctatata 327166
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 81.8 bits (41), Expect = 1e-12 Identities = 83/96 (86%), Gaps = 7/96 (7%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcg------ttttt 102 ||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||| Sbjct: 11570 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttattttt 11629 Query: 103 ctcgtttgatttcg-ccgttgccggaccctgctctt 137 |||||||| ||||| |||| | |||||||||||||| Sbjct: 11630 ctcgtttgttttcgtccgtagtcggaccctgctctt 11665 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| |||||||||||||||||| |||||| |||| Sbjct: 4033 ctaggatgggttccaggccggcagcctgggatagcaaggatggatgtcgttcttct 4088 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 227 gtacatgtagttgtaacaatatccattc 254 ||||||||| |||||||||||||||||| Sbjct: 11755 gtacatgtacttgtaacaatatccattc 11782 Score = 46.1 bits (23), Expect = 0.081 Identities = 59/71 (83%) Strand = Plus / Plus Query: 231 atgtagttgtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcga 290 ||||| ||||||| |||||||||| | | | || ||||||||| ||| |||||| ||| Sbjct: 4222 atgtacttgtaacgatatccattcttgcgacacgacgagatgcgcttctatccctgacga 4281 Query: 291 ggccttcgtgc 301 ||||||||||| Sbjct: 4282 ggccttcgtgc 4292 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaa 205 ||||||||||||||||||| |||| Sbjct: 4168 tagcttgtggcgagtgtaagccaa 4191
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 81.8 bits (41), Expect = 1e-12 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgt----ttttct 104 ||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||| Sbjct: 37446 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgtttcattttct 37387 Query: 105 cgtttgatttcg-ccgttgccggaccctgctctt 137 |||||| ||||| |||| | ||||||| |||||| Sbjct: 37386 cgtttgttttcgtccgtagtcggaccccgctctt 37353 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 227 gtacatgtagttgtaacaatatccattccttcaaaacaacgagatgcactttcatcccta 286 ||||||||| ||||||| |||||||||| | | | || ||||||||| ||| |||||| Sbjct: 37262 gtacatgtacttgtaacgatatccattcttgcgacacgacgagatgcgcttctatccctg 37203 Query: 287 tcgaggccttcgtgc 301 |||||||||||||| Sbjct: 37202 acgaggccttcgtgc 37188
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 3477 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 3422 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 tagcttgtggcgagtgtaatccaa 205 ||||||||||||||||||| |||| Sbjct: 3341 tagcttgtggcgagtgtaagccaa 3318
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 68311 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 68256 Score = 46.1 bits (23), Expect = 0.081 Identities = 62/75 (82%) Strand = Plus / Minus Query: 227 gtacatgtagttgtaacaatatccattccttcaaaacaacgagatgcactttcatcccta 286 ||||||||| ||| ||| |||||||||| | | | || ||||||||||||| |||||| Sbjct: 68128 gtacatgtacttgcaacgatatccattcttgcgacacgacgagatgcacttctatccctg 68069 Query: 287 tcgaggccttcgtgc 301 ||||||| |||||| Sbjct: 68068 acgaggccctcgtgc 68054
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 65007 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 64952 Score = 42.1 bits (21), Expect = 1.3 Identities = 98/123 (79%), Gaps = 3/123 (2%) Strand = Plus / Minus Query: 182 tagcttgtggcgagtgtaatccaattccatata---ctcatatcttttgtacatgtagtt 238 ||||||||||||||||||| |||| || |||| ||| | | || ||||||||| || Sbjct: 64872 tagcttgtggcgagtgtaagccaactctttatatatctcttcttttcagtacatgtactt 64813 Query: 239 gtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcg 298 ||||| |||||||||| | | | || ||||||||| ||| |||||| ||||||| ||| Sbjct: 64812 gtaacgatatccattcttgcgacacgacgagatgcgcttctatccctgacgaggccctcg 64753 Query: 299 tgc 301 ||| Sbjct: 64752 tgc 64750
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 102939 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 102884 Score = 48.1 bits (24), Expect = 0.020 Identities = 100/123 (81%), Gaps = 3/123 (2%) Strand = Plus / Minus Query: 182 tagcttgtggcgagtgtaatccaattc--catata-ctcatatcttttgtacatgtagtt 238 ||||||||||||||||||| |||| || ||||| ||||| | || ||||||||| || Sbjct: 102804 tagcttgtggcgagtgtaagccaactcttgatatatctcatcttttcagtacatgtactt 102745 Query: 239 gtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggccttcg 298 ||||| |||||||||| | | | || ||||||||| ||| |||||| ||||||| ||| Sbjct: 102744 gtaacgatatccattcttgcgacaccacgagatgcggttttatccctgacgaggccctcg 102685 Query: 299 tgc 301 ||| Sbjct: 102684 tgc 102682
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 16537 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 16482
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 10393 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 10448 Score = 65.9 bits (33), Expect = 9e-08 Identities = 102/125 (81%), Gaps = 5/125 (4%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatata-----ctcatatcttttgtacatgtag 236 ||||||||||||||||||| ||||||| ||||| ||||| | || ||||||||| Sbjct: 10528 tagcttgtggcgagtgtaagccaattcaatatatatatctcatcttttcagtacatgtac 10587 Query: 237 ttgtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggcctt 296 ||||||| |||||||||| | | | || ||||||||| ||| |||||| ||||||||| Sbjct: 10588 ttgtaacgatatccattcttgcgacacgacgagatgcgcttctatccctgacgaggcctt 10647 Query: 297 cgtgc 301 ||||| Sbjct: 10648 cgtgc 10652
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 79.8 bits (40), Expect = 6e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 2836 ctaggatgggttccaggccggcagcctgggatagcaaggatggacgtcgttcttct 2891 Score = 65.9 bits (33), Expect = 9e-08 Identities = 102/125 (81%), Gaps = 5/125 (4%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaattccatata-----ctcatatcttttgtacatgtag 236 ||||||||||||||||||| ||||||| ||||| ||||| | || ||||||||| Sbjct: 2971 tagcttgtggcgagtgtaagccaattcaatatatatatctcatcttttcagtacatgtac 3030 Query: 237 ttgtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcgaggcctt 296 ||||||| |||||||||| | | | || ||||||||| ||| |||||| ||||||||| Sbjct: 3031 ttgtaacgatatccattcttgcgacacgacgagatgcgcttctatccctgacgaggcctt 3090 Query: 297 cgtgc 301 ||||| Sbjct: 3091 cgtgc 3095
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| |||| |||||||||||||||||| |||||| |||| Sbjct: 4033 ctaggatgggttccaggccggcagcctgggatagcaaggatggatgtcgttcttct 4088 Score = 46.1 bits (23), Expect = 0.081 Identities = 59/71 (83%) Strand = Plus / Plus Query: 231 atgtagttgtaacaatatccattccttcaaaacaacgagatgcactttcatccctatcga 290 ||||| ||||||| |||||||||| | | | || ||||||||| ||| |||||| ||| Sbjct: 4222 atgtacttgtaacgatatccattcttgcgacacgacgagatgcgcttctatccctgacga 4281 Query: 291 ggccttcgtgc 301 ||||||||||| Sbjct: 4282 ggccttcgtgc 4292 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaa 205 ||||||||||||||||||| |||| Sbjct: 4168 tagcttgtggcgagtgtaagccaa 4191
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||| Sbjct: 2709 ctaggatgggttccagaccggcagcctgggatagcaaggatggacgtcgttcttct 2654
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 49 ctaggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttct 104 ||||||||||||| |||||| || | | ||||||||||||||||||||||| |||| Sbjct: 10912 ctaggatgggttccaggccggcaccctcggatagcaaggatggacgtcgttcttct 10967 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 tagcttgtggcgagtgtaatccaa 205 ||||||||||||||||||| |||| Sbjct: 11047 tagcttgtggcgagtgtaagccaa 11070
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand = Plus / Plus Query: 50 taggatgggttctaggccgacagcttgggatagcaaggatggacgtcgtttttctcgttt 109 |||||||| |||||||| | |||| | |||||||||||||||| ||| |||| | |||| Sbjct: 4256 taggatggattctaggcgg-cagcctaggatagcaaggatggatgtc-attttattgttt 4313 Query: 110 gatttcg-ccgttgccggaccctgctctt 137 ||||||| |||| | |||||||||||||| Sbjct: 4314 gatttcgtccgtagtcggaccctgctctt 4342
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgttt 100 |||| |||||||||||||||||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgttt 32
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgttt 100 |||| |||||||||||||||||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgttt 32
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgttt 100 |||| |||||||||||||||||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgttt 32
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgttt 100 |||| |||||||||||||||||| ||||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgttt 32
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtt 99 |||| |||||||||||||||||| |||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgtt 31
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 70 cagcttgggatagcaaggatggacgtcgtt 99 |||| |||||||||||||||||| |||||| Sbjct: 2 cagcctgggatagcaaggatggatgtcgtt 31
>emb|AL138914.9| Human DNA sequence from clone RP11-15L1 on chromosome 13 Contains part of a novel gene, complete sequence Length = 153439 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 tacatgtagttgtaacaatat 248 ||||||||||||||||||||| Sbjct: 61720 tacatgtagttgtaacaatat 61700
>gb|AC133871.13| Mus musculus chromosome 1, clone RP24-414I11, complete sequence Length = 203423 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 143 tggtgactgaatgtattgatgtattgtg 170 |||||||||||| |||| |||||||||| Sbjct: 116534 tggtgactgaatatattcatgtattgtg 116561
>gb|AC104844.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030L19, complete sequence Length = 128848 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 235 agttgtaacaatatccattccttcaaaa 262 ||||||| ||||||||||||| |||||| Sbjct: 83356 agttgtagcaatatccattccatcaaaa 83383
>emb|Z70682.1|CEF08G5 Caenorhabditis elegans Cosmid F08G5, complete sequence Length = 32784 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gtttttctcgtttgatttcg 116 |||||||||||||||||||| Sbjct: 7683 gtttttctcgtttgatttcg 7702
>gb|AC160462.6| Mus musculus chromosome 1, clone RP23-225K21, complete sequence Length = 197253 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 tggtgactgaatgtattgatgtattgtg 170 |||||||||||| |||| |||||||||| Sbjct: 195620 tggtgactgaatatattcatgtattgtg 195593
>gb|AC158948.3| Mus musculus chromosome 1, clone RP24-263I3, complete sequence Length = 201046 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 tggtgactgaatgtattgatgtattgtg 170 |||||||||||| |||| |||||||||| Sbjct: 45466 tggtgactgaatatattcatgtattgtg 45439
>emb|BX323061.6| Mouse DNA sequence from clone RP24-267L10 on chromosome 11 Contains part of a novel gene and a CpG island, complete sequence Length = 137694 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tttgtacatgtagttgtaac 243 |||||||||||||||||||| Sbjct: 65544 tttgtacatgtagttgtaac 65563
>emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on chromosome X, complete sequence Length = 162215 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 actgaatgtattgatgtatt 167 |||||||||||||||||||| Sbjct: 97128 actgaatgtattgatgtatt 97109
>gb|AC087272.5| Homo sapiens chromosome 8, clone RP11-139G7, complete sequence Length = 199946 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tactcatatcttttgtacat 232 |||||||||||||||||||| Sbjct: 238 tactcatatcttttgtacat 219
>gb|AC090919.6| Homo sapiens chromosome 8, clone RP11-42C24, complete sequence Length = 184897 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tactcatatcttttgtacat 232 |||||||||||||||||||| Sbjct: 17511 tactcatatcttttgtacat 17530
>ref|NM_001027950.1| Caenorhabditis elegans F08G5.3b (F08G5.3) mRNA, complete cds Length = 677 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gtttttctcgtttgatttcg 116 |||||||||||||||||||| Sbjct: 286 gtttttctcgtttgatttcg 267
>ref|NM_001027949.1| Caenorhabditis elegans F08G5.3a (F08G5.3) mRNA, complete cds Length = 660 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gtttttctcgtttgatttcg 116 |||||||||||||||||||| Sbjct: 263 gtttttctcgtttgatttcg 244
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 235 agttgtaacaatatccattccttcaaaa 262 ||||||| ||||||||||||| |||||| Sbjct: 23214171 agttgtagcaatatccattccatcaaaa 23214198
>gb|AC103965.5| Homo sapiens chromosome 15, clone CTD-2071L7, complete sequence Length = 94879 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tgaatgtattgatgtattgt 169 |||||||||||||||||||| Sbjct: 76195 tgaatgtattgatgtattgt 76176
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 235 agttgtaacaatatccattccttcaaaa 262 ||||||| ||||||||||||| |||||| Sbjct: 23524081 agttgtagcaatatccattccatcaaaa 23524108
>dbj|AP004986.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT33P04, TM0476b, complete sequence Length = 75682 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 caattccatatactcatatctttt 226 ||||||||||||||||||| |||| Sbjct: 4559 caattccatatactcatatttttt 4536 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,704,733 Number of Sequences: 3902068 Number of extensions: 2704733 Number of successful extensions: 44684 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44519 Number of HSP's gapped (non-prelim): 146 length of query: 373 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 351 effective length of database: 17,147,199,772 effective search space: 6018667119972 effective search space used: 6018667119972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
