ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal8b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYFB_MAGMM (Q2VYZ1) Phenylalanyl-tRNA synthetase beta chain (EC ... 32 1.9
2XYNA_PSEFL (P14768) Endo-1,4-beta-xylanase A precursor (EC 3.2.1... 30 5.6

>SYFB_MAGMM (Q2VYZ1) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 798

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 109 PVPAACMPAPILTRSVPSAMVPGRVRSNRWIRRWLAISGL 228
           P+P   MP P+LT        PG+ RS  W+RR LA  GL
Sbjct: 478 PMPRPAMPKPVLT--------PGQRRSG-WVRRQLATRGL 508



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>XYNA_PSEFL (P14768) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase|
           A) (1,4-beta-D-xylan xylanohydrolase A) (XYLA)
          Length = 611

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 261 NPSSLASCSLMQTRDS*PTPDPSVATYAPRDHGRGHTPSEDGSRHACSWYWSLMP 97
           +PSS+AS  +     S P    SVA+          TP        C+WY +L P
Sbjct: 147 SPSSVASSVISSMASSSPVSSSSVAS---------STPGSSSGNQQCNWYGTLYP 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,172,682
Number of Sequences: 219361
Number of extensions: 1865058
Number of successful extensions: 4128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4124
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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