ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8a14 |
|---|---|
| Clone Library Name | barley_pub |
>GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157| Length = 335 Score = 32.3 bits (72), Expect = 0.32 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 134 CNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPS 256 C CCC+S P T +P P + AP+ S + + PS Sbjct: 294 CCCCCSSQPPTKSPAGTPKAPAPSKPGESQESQGTPGELPS 334
>YMV2_CAEEL (P34504) Hypothetical protein K04H4.2 precursor| Length = 967 Score = 32.0 bits (71), Expect = 0.42 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = +2 Query: 26 NGQCPLRSVLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPT 205 NG CP + GN CSA C +G+T +P+ N C N P S T Sbjct: 583 NGLCPTGYTVQGNLCCSATCTDGSTG-------LPSVNGVCIDGYSLTNGVCCPASV--T 633 Query: 206 CKD 214 C D Sbjct: 634 CTD 636
>NH153_CAEEL (O01929) Nuclear hormone receptor family member nhr-153| Length = 415 Score = 30.4 bits (67), Expect = 1.2 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +2 Query: 50 VLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRT-HNPREVPPSTAPTCKDGSHR 226 +LP N+ C + C+ Y EVP+CN C T RT R+ C DG+ Sbjct: 19 ILPQNQ-CPSVCQICRNPAIGYHYEVPSCNGCKTFFRRTIITGRKFKCFKVSNCLDGN-- 75 Query: 227 NARDGSKRPSR 259 + D SKR R Sbjct: 76 DVIDTSKRVCR 86
>TR10C_HUMAN (O14798) Tumor necrosis factor receptor superfamily member 10C| precursor (Decoy receptor 1) (DcR1) (Decoy TRAIL receptor without death domain) (TNF-related apoptosis-inducing ligand receptor 3) (TRAIL receptor 3) (TRAIL-R3) (Trail receptor wi Length = 259 Score = 30.0 bits (66), Expect = 1.6 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = +2 Query: 32 QCPLRSVLPGNEWCSAPCREGTTATSWYEAEVPACNCC--CTSSPRTHNPREVPPSTAPT 205 +CP S + PC EG T+ E P+C C C S + + + T Sbjct: 52 ECPAGSHRSEHTGACNPCTEGVDYTNASNNE-PSCFPCTVCKSDQKHKSSCTMTRDTVCQ 110 Query: 206 CKDGSHRN 229 CK+G+ RN Sbjct: 111 CKEGTFRN 118
>LEU2_THET8 (Q9ZND5) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 472 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +2 Query: 50 VLPGNEWCSAPCREGTTATSWYEA----EVPACNCCCTSSPRTHNPREVPPSTAPTCKDG 217 V+PG+EW + E A + EA +P C+ C +P E+ C Sbjct: 374 VVPGSEWVARKAEEEGIAEVFREAGFEWRMPGCSMCLAMNPDRLEGDEL-------CASS 426 Query: 218 SHRN--ARDGSKR 250 S+RN R GS R Sbjct: 427 SNRNYKGRMGSPR 439
>LEU2_THET2 (Q72JB3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 472 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +2 Query: 50 VLPGNEWCSAPCREGTTATSWYEA----EVPACNCCCTSSPRTHNPREVPPSTAPTCKDG 217 V+PG+EW + E A + EA +P C+ C +P E+ C Sbjct: 374 VVPGSEWVARKAEEEGIAEVFREAGFEWRMPGCSMCLAMNPDRLEGDEL-------CASS 426 Query: 218 SHRN--ARDGSKR 250 S+RN R GS R Sbjct: 427 SNRNYKGRMGSPR 439
>HLAE_HUMAN (P13747) HLA class I histocompatibility antigen, alpha chain E| precursor (MHC class I antigen E) Length = 358 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = -1 Query: 228 LRWLPSLQ-----VGAVDGGTSRGLCVRGLLV-----QQQLQAGTSASYQLVAVVPSRQG 79 LRW P+ Q VG + G G V G +V +++ G SY S QG Sbjct: 293 LRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQG 352 Query: 78 AEHHSL 61 +E HSL Sbjct: 353 SESHSL 358
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 28.9 bits (63), Expect = 3.6 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +2 Query: 59 GNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNA 232 G E CS ++T E P +CC PRT P + S +P+ + G+ R A Sbjct: 444 GRERCSQDSASPASSTGLPEGSEPESSCC----PRT--PEDGVDSASPSAQIGAERKA 495
>YQ23_CAEEL (Q09452) Putative zinc finger protein C09F5.3| Length = 359 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = -2 Query: 227 CDGYHLCR*GLWTEGLHEGCACEGCSCSNNCRRALQLHTSWWL*CLRDKGQNTTHCPVRP 48 CD L GL L + C +C+ L TS+ CLR + HCP+R Sbjct: 293 CDESVLGEDGLDEHRLRKHCKVRFADKCADCQEPLLNETSFVEHCLRHSKDHAHHCPLRL 352 Query: 47 S 45 S Sbjct: 353 S 353
>FLGH_XANOR (Q5GZP1) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 230 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 33 SAHXARSYRAMSGVLPLVAKALQPPAGMKLKCPPAI 140 +A R Y AM+ ++P+VA +QP AG P + Sbjct: 25 AAGDVRPYAAMAPIVPVVAPTVQPTAGAIYAAGPGL 60
>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2319 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/50 (30%), Positives = 21/50 (42%) Frame = +2 Query: 74 SAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKDGSH 223 S PC+ G T TS + +C C + H + P T C+ G H Sbjct: 742 SQPCQAGGTCTS----DGIGFHCTCAPGFQGHQCEVLSPCTPSLCEHGGH 787
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 28.1 bits (61), Expect = 6.1 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Frame = +2 Query: 32 QCPL---RSVLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSS----PRTHNPREVPP 190 +CPL R + G C PC G T W +A C C +S P R PP Sbjct: 694 KCPLNCGRKLRCGLHRCEEPCHRGNCQTCW-QASFDELTCHCGASVIYPPVPCGTR--PP 750 Query: 191 STAPTC 208 TC Sbjct: 751 ECTQTC 756
>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2318 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/50 (30%), Positives = 20/50 (40%) Frame = +2 Query: 74 SAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKDGSH 223 S PC+ G T TS + C C + H + P T C+ G H Sbjct: 741 SQPCQAGGTCTS----DGIGFRCTCAPGFQGHQCEVLSPCTPSLCEHGGH 786
>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)| (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1) (ArgBP1) Length = 513 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/46 (34%), Positives = 18/46 (39%) Frame = +2 Query: 119 AEVPACNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPS 256 A P S+P P VP STAP G N DG P+ Sbjct: 289 AGTPPLPATSASAPAPLVPATVPSSTAPNAAAGGAPNLADGFTSPT 334
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/51 (19%), Positives = 24/51 (47%) Frame = +2 Query: 62 NEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKD 214 +E C C + T + + C+C C + P+ ++P+ + + C++ Sbjct: 750 DETCDCVCPQKNTCIAPKVWDAKTCSCICVNPPKCNSPQVLKDTCCCGCQN 800
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/47 (29%), Positives = 15/47 (31%) Frame = -2 Query: 242 CHPEHCDGYHLCR*GLWTEGLHEGCACEGCSCSNNCRRALQLHTSWW 102 CHP G C G W C C S + A H WW Sbjct: 163 CHPR--SGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHAGWW 207
>PLB_NEUCR (O42790) Lysophospholipase precursor (EC 3.1.1.5) (Phospholipase B)| Length = 653 Score = 27.7 bits (60), Expect = 7.9 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Frame = +2 Query: 44 RSVLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKD--- 214 R+ + GN W SA GT + W P C C S P+ TC + Sbjct: 546 RNDIIGNGWNSATQGNGTLDSEW-----PTCVACAVISRSLDRLGRQTPAACKTCFERYC 600 Query: 215 --GSHRNARDGSKRPSRGVA*AH 277 G+ + G P +A AH Sbjct: 601 WNGTVNSKDTGVYMPEFKIADAH 623
>SCTM1_HUMAN (Q8WVN6) Secreted and transmembrane protein 1 precursor (Protein| K12) Length = 248 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +2 Query: 68 WCSAPCREGTTATSWYEAEVPACN 139 W S C EG + SW E V +CN Sbjct: 33 WDSPICTEGVVSVSWGENTVMSCN 56
>FST_BRARE (Q9YHV4) Follistatin precursor (FS) (Activin-binding protein)| Length = 322 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +2 Query: 23 QNGQCPLRSVLPG--NEWCSAPCREGTTATSWYEAEVP 130 +NG+C + +PG E C CR G TSW E +VP Sbjct: 41 KNGRCQVL-YMPGMSREEC---CRSGRLGTSWTEEDVP 74
>DTBP1_HUMAN (Q96EV8) Dystrobrevin-binding protein 1 (Dysbindin)| (Hermansky-Pudlak syndrome 7 protein) Length = 351 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +2 Query: 170 NPREV---PPSTAPTCKDGSHRNARDGSKRP 253 NP E+ PPS++ TC D + R+ +G + P Sbjct: 287 NPSELRAKPPSSSSTCTDSATRDISEGGESP 317
>TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42| Length = 723 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +2 Query: 65 EWCSAPCREGTTA----TSWYEAEVPACNCCCTSS 157 ++C C E SW A P C CCCT+S Sbjct: 51 QFCHCTCAENPNCHWCCCSW--ANDPNCKCCCTAS 83
>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42| Length = 723 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +2 Query: 65 EWCSAPCREGTTA----TSWYEAEVPACNCCCTSS 157 ++C C E SW A P C CCCT+S Sbjct: 51 QFCHCTCSESPNCHWCCCSW--ANDPNCKCCCTAS 83
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/47 (29%), Positives = 15/47 (31%) Frame = -2 Query: 242 CHPEHCDGYHLCR*GLWTEGLHEGCACEGCSCSNNCRRALQLHTSWW 102 CHP G C G W C C S + A H WW Sbjct: 155 CHPR--SGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHVGWW 199
>PER3_MOUSE (O70361) Period circadian protein 3 (mPER3)| Length = 1113 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 153 LVQQQLQAGTSASYQLVAVVPSRQGAEHHSLPGKTERSGHCP 28 L+ Q + A S+ Y + S++ +H S+ +E SGHCP Sbjct: 406 LLLQPVHASASSGYGSLGSSGSQE--QHVSITSSSESSGHCP 445
>VT2_SFVKA (P25943) Tumor necrosis factor soluble receptor precursor (Protein| T2) Length = 325 Score = 27.7 bits (60), Expect = 7.9 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Frame = +2 Query: 56 PGNEWCSAPCREGTTATSWYEAEVPACNCC---CTSSPRTHNPREVPPSTAPTCKDGSH 223 PG+ +PC +GT S A PAC C CT P + C G++ Sbjct: 55 PGSNTVCSPCEDGTFTASTNHA--PACVSCRGPCTGHLSESQPCDRTHDRVCNCSTGNY 111 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,597,293 Number of Sequences: 219361 Number of extensions: 913685 Number of successful extensions: 3153 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3147 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
