ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal8a14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1700 Score = 208 bits (105), Expect = 7e-51 Identities = 219/256 (85%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 854 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 912 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||||||||| | || Sbjct: 913 gttgcaaaggctttacaaccaccagcaggtgtgaagctgaagtgcccgcctgctgtggtc 972 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 ||| ||| |||||||| ||||| || || |||||||| |||||||| |||||||| Sbjct: 973 gctatacgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcccctg 1032 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || |||| || |||||||||||| |||||||||||||| Sbjct: 1033 cctgcaaagatggtagccattgcgttgcttggaatggcagcaaacatccctctcggggtg 1092 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 1093 tggcgtgagcacacca 1108
>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence Length = 1457 Score = 208 bits (105), Expect = 7e-51 Identities = 219/256 (85%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||| Sbjct: 593 aaaatggccagtgcccactt-gcgcggtcttaccgggcaatgagtggtgttttgcccctc 651 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 ||||| ||||| |||||||||||| ||||||||||||||||||||| ||||| | ||| Sbjct: 652 gtcgccaaggctttacagccaccaggtggtatgaagctgaagtgcccacctgctgtggtt 711 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| ||||| ||||| ||||| || | || ||||| ||||| || ||||||||||| Sbjct: 712 gctgtccgagctgcccttgcacgaactgcgcttgtgaaatccctgcgaccacagcccctg 771 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 || |||||||||||||||| ||| | || |||||||| |||||| ||||||| |||||| Sbjct: 772 ccctcaaagatggtagccattgcactactggggatggcggcaaacatccctcttggggtg 831 Query: 264 tggcgtgagcacacca 279 ||||| |||||||||| Sbjct: 832 tggcgggagcacacca 847
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 208 bits (105), Expect = 7e-51 Identities = 219/256 (85%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 3216340 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 3216282 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||||||||| | || Sbjct: 3216281 gttgcaaaggctttacaaccaccagcaggtgtgaagctgaagtgcccgcctgctgtggtc 3216222 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 ||| ||| |||||||| ||||| || || |||||||| |||||||| |||||||| Sbjct: 3216221 gctatacgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcccctg 3216162 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || |||| || |||||||||||| |||||||||||||| Sbjct: 3216161 cctgcaaagatggtagccattgcgttgcttggaatggcagcaaacatccctctcggggtg 3216102 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 3216101 tggcgtgagcacacca 3216086
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 208 bits (105), Expect = 7e-51 Identities = 219/256 (85%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 131330 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 131272 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||||||||| | || Sbjct: 131271 gttgcaaaggctttacaaccaccagcaggtgtgaagctgaagtgcccgcctgctgtggtc 131212 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 ||| ||| |||||||| ||||| || || |||||||| |||||||| |||||||| Sbjct: 131211 gctatacgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcccctg 131152 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || |||| || |||||||||||| |||||||||||||| Sbjct: 131151 cctgcaaagatggtagccattgcgttgcttggaatggcagcaaacatccctctcggggtg 131092 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 131091 tggcgtgagcacacca 131076
>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full insert sequence Length = 1699 Score = 208 bits (105), Expect = 7e-51 Identities = 219/256 (85%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 853 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 911 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||||||||| | || Sbjct: 912 gttgcaaaggctttacaaccaccagcaggtgtgaagctgaagtgcccgcctgctgtggtc 971 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 ||| ||| |||||||| ||||| || || |||||||| |||||||| |||||||| Sbjct: 972 gctatacgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcccctg 1031 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || |||| || |||||||||||| |||||||||||||| Sbjct: 1032 cctgcaaagatggtagccattgcgttgcttggaatggcagcaaacatccctctcggggtg 1091 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 1092 tggcgtgagcacacca 1107
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 208 bits (105), Expect = 7e-51 Identities = 219/256 (85%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 26033 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 25975 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||||||||| | || Sbjct: 25974 gttgcaaaggctttacaaccaccagcaggtgtgaagctgaagtgcccgcctgctgtggtc 25915 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 ||| ||| |||||||| ||||| || || |||||||| |||||||| |||||||| Sbjct: 25914 gctatacgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcccctg 25855 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || |||| || |||||||||||| |||||||||||||| Sbjct: 25854 cctgcaaagatggtagccattgcgttgcttggaatggcagcaaacatccctctcggggtg 25795 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 25794 tggcgtgagcacacca 25779
>ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1116 Score = 192 bits (97), Expect = 4e-46 Identities = 217/256 (84%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 524 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 582 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||| ||||| | || Sbjct: 583 gttgccaaggctttacaaccaccagccggtgtgaagctgaagtgcccacctgctgtggtc 642 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| || |||||||| ||||| || || |||||||| |||||||| ||||| || Sbjct: 643 gctgtgcgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcctctg 702 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||| Sbjct: 703 cctgcaaagatggtagccattgcgttgctcggaatggcagcaaacatccctcttggggtg 762 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 763 tggcgtgagcacacca 778
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 192 bits (97), Expect = 4e-46 Identities = 217/256 (84%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 876805 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 876747 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||| ||||| | || Sbjct: 876746 gttgccaaggctttacaaccaccagccggtgtgaagctgaagtgcccacctgctgtggtc 876687 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| || |||||||| ||||| || || |||||||| |||||||| ||||| || Sbjct: 876686 gctgtgcgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcctctg 876627 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||| Sbjct: 876626 cctgcaaagatggtagccattgcgttgctcggaatggcagcaaacatccctcttggggtg 876567 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 876566 tggcgtgagcacacca 876551
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 192 bits (97), Expect = 4e-46 Identities = 217/256 (84%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 57700 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 57642 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||| ||||| | || Sbjct: 57641 gttgccaaggctttacaaccaccagccggtgtgaagctgaagtgcccacctgctgtggtc 57582 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| || |||||||| ||||| || || |||||||| |||||||| ||||| || Sbjct: 57581 gctgtgcgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcctctg 57522 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||| Sbjct: 57521 cctgcaaagatggtagccattgcgttgctcggaatggcagcaaacatccctcttggggtg 57462 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 57461 tggcgtgagcacacca 57446
>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full insert sequence Length = 1116 Score = 192 bits (97), Expect = 4e-46 Identities = 217/256 (84%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 260 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 318 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||| ||||| | || Sbjct: 319 gttgccaaggctttacaaccaccagccggtgtgaagctgaagtgcccacctgctgtggtc 378 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| || |||||||| ||||| || || |||||||| |||||||| ||||| || Sbjct: 379 gctgtgcgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcctctg 438 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||| Sbjct: 439 cctgcaaagatggtagccattgcgttgctcggaatggcagcaaacatccctcttggggtg 498 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 499 tggcgtgagcacacca 514
>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) Length = 11618 Score = 184 bits (93), Expect = 1e-43 Identities = 216/256 (84%), Gaps = 1/256 (0%) Strand = Plus / Minus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 8893 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 8835 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||| ||||| | || Sbjct: 8834 gttgccaaggctttacaaccaccagccggtgtgaagctgaagtgcccacctgctgtggtc 8775 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| || |||||||| ||||| || || |||||||| |||||||| ||||| || Sbjct: 8774 gctgtgcgtgcagcccttgcacggactgaacttgtgaagtctctccgtccccagcctctg 8715 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || |||| || |||||||||||| ||||||| |||||| Sbjct: 8714 cctgcaaagatggtagccattgcgttgcttggaatggcagcaaacatccctcttggggtg 8655 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 8654 tggcgtgagcacacca 8639
>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full insert sequence Length = 3418 Score = 184 bits (93), Expect = 1e-43 Identities = 216/256 (84%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 24 aaaatggacagtgcccactncgctcggtcttaccgggcaatgagtggtgttctgcccctt 83 ||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct: 2638 aaaatgggcagtgcccactt-gcccggtcttaccgagcaatgagtggcattctgcccctt 2696 Query: 84 gtcgcgaaggcactacagccaccagctggtatgaagctgaagtgcccgcctgcaattgtt 143 || || ||||| |||| |||||||| ||| |||||||||||||||| ||||| | || Sbjct: 2697 gttgccaaggctttacaaccaccagccggtgtgaagctgaagtgcccacctgctgtggtc 2756 Query: 144 gctgcacgagcagccctcgcacgcacaaccctcgtgaagtccctccgtccacagccccta 203 |||| || |||||||| ||||| || || |||||||| |||||| | ||||| || Sbjct: 2757 gctgtgcgtgcagcccttgcacggactgaacttgtgaagtctctccgtacccagcctctg 2816 Query: 204 cctgcaaagatggtagccatcgcaatgctcgggatggcagcaaacgtccctctcggggtg 263 |||||||||||||||||||| || ||||||| |||||||||||| ||||||| |||||| Sbjct: 2817 cctgcaaagatggtagccattgcgttgctcggaatggcagcaaacatccctcttggggtg 2876 Query: 264 tggcgtgagcacacca 279 |||||||||||||||| Sbjct: 2877 tggcgtgagcacacca 2892
>gb|AF192975.1|AF192975 Oryza sativa unknown gene Length = 673 Score = 58.0 bits (29), Expect = 2e-05 Identities = 42/45 (93%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 235 ggatggcagcaaacgtccctctcggggtgtggcgtgagcacacca 279 |||||||||||||| ||| ||| |||||||||||||||||||||| Sbjct: 17 ggatggcagcaaac-tccatcttggggtgtggcgtgagcacacca 60
>gb|AC104809.5| Homo sapiens BAC clone RP11-637O3 from 2, complete sequence Length = 167196 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gaaggcactacagccaccag 108 |||||||||||||||||||| Sbjct: 84721 gaaggcactacagccaccag 84740 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,484,094 Number of Sequences: 3902068 Number of extensions: 1484094 Number of successful extensions: 25950 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25905 Number of HSP's gapped (non-prelim): 32 length of query: 279 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 257 effective length of database: 17,147,199,772 effective search space: 4406830341404 effective search space used: 4406830341404 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
