ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; c... 377 e-101
2emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMW... 377 e-101
3ref|XM_450593.1| Oryza sativa (japonica cultivar-group), mRNA 311 9e-82
4dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 9e-82
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 212 6e-52
6dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 212 6e-52
7gb|AY107736.1| Zea mays PCO090313 mRNA sequence 184 1e-43
8gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence 157 3e-35
9ref|XM_482242.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
10ref|XM_507223.1| PREDICTED Oryza sativa (japonica cultivar-group... 70 6e-09
11ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-group... 70 6e-09
12dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
13dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
14dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
16dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
17gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 ... 46 0.086
18emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in ... 40 5.3
19gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, comple... 40 5.3
20gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 5.3
21emb|AL135793.13| Human DNA sequence from clone RP11-296H2 on chr... 40 5.3
22gb|AC016919.15| Homo sapiens 3 BAC RP11-220J13 (Roswell Park Can... 40 5.3
23emb|X58831.1|CSGDHANC C.sorokiniana gdhANC gene for NADP-specifi... 40 5.3
24emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 i... 40 5.3
25emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in l... 40 5.3
26emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 i... 40 5.3
27emb|BX510330.20| Zebrafish DNA sequence from clone DKEYP-82B3 in... 40 5.3

>emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; clone MWG0803
          Length = 598

 Score =  377 bits (190), Expect = e-101
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 208 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 68

                                                                       
Query: 268 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 128

                                                                       
Query: 328 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 188

                     
Query: 388 gcattcggac 397
           ||||||||||
Sbjct: 189 gcattcggac 198



to top

>emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMWG0770
          Length = 594

 Score =  377 bits (190), Expect = e-101
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 208 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 62

                                                                       
Query: 268 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 122

                                                                       
Query: 328 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 182

                     
Query: 388 gcattcggac 397
           ||||||||||
Sbjct: 183 gcattcggac 192



to top

>ref|XM_450593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score =  311 bits (157), Expect = 9e-82
 Identities = 331/389 (85%)
 Strand = Plus / Plus

                                                                       
Query: 5   tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 64
           |||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 362 tatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcc 421

                                                                       
Query: 65  tcgcacgtccagcatgagattcagtatggaggcgacaatccgttggcctctccaagatca 124
           |||||| ||||||| ||||| ||||||||||| |||||| | |  |||||||||||||||
Sbjct: 422 tcgcacatccagcacgagatccagtatggaggtgacaatgcatcagcctctccaagatca 481

                                                                       
Query: 125 caatatgcaagccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaa 184
           ||  ||||||||||||||||||| ||||| |||| ||| ||||||||||  |||||||| 
Sbjct: 482 cagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagccagcag 541

                                                                       
Query: 185 ccatctgcgagcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcg 244
           |||||  | | ||||||||| ||||||||  |||| |||  |||| |||||||||| |||
Sbjct: 542 ccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcg 601

                                                                       
Query: 245 gtcttttccaacgcactatccagccccgtgcgccggggcctgcaaccataccatctggat 304
           |||||||| || |||||||| |||||||| |||||| |||||||||||| ||| ||||| 
Sbjct: 602 gtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacctggag 661

                                                                       
Query: 305 cagggtggggatgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggct 364
           |||||||| ||||| || ||||| || |||||| |   |||||| |  ||  | ||||||
Sbjct: 662 cagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggct 721

                                        
Query: 365 tcaaacgactcatccatggacatgcattc 393
           || ||||| ||||||||||||||||||||
Sbjct: 722 tcgaacgattcatccatggacatgcattc 750



to top

>dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full
           insert sequence
          Length = 1102

 Score =  311 bits (157), Expect = 9e-82
 Identities = 331/389 (85%)
 Strand = Plus / Plus

                                                                       
Query: 5   tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 64
           |||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 362 tatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcc 421

                                                                       
Query: 65  tcgcacgtccagcatgagattcagtatggaggcgacaatccgttggcctctccaagatca 124
           |||||| ||||||| ||||| ||||||||||| |||||| | |  |||||||||||||||
Sbjct: 422 tcgcacatccagcacgagatccagtatggaggtgacaatgcatcagcctctccaagatca 481

                                                                       
Query: 125 caatatgcaagccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaa 184
           ||  ||||||||||||||||||| ||||| |||| ||| ||||||||||  |||||||| 
Sbjct: 482 cagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagccagcag 541

                                                                       
Query: 185 ccatctgcgagcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcg 244
           |||||  | | ||||||||| ||||||||  |||| |||  |||| |||||||||| |||
Sbjct: 542 ccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcg 601

                                                                       
Query: 245 gtcttttccaacgcactatccagccccgtgcgccggggcctgcaaccataccatctggat 304
           |||||||| || |||||||| |||||||| |||||| |||||||||||| ||| ||||| 
Sbjct: 602 gtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacctggag 661

                                                                       
Query: 305 cagggtggggatgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggct 364
           |||||||| ||||| || ||||| || |||||| |   |||||| |  ||  | ||||||
Sbjct: 662 cagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggct 721

                                        
Query: 365 tcaaacgactcatccatggacatgcattc 393
           || ||||| ||||||||||||||||||||
Sbjct: 722 tcgaacgattcatccatggacatgcattc 750



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  212 bits (107), Expect = 6e-52
 Identities = 266/319 (83%)
 Strand = Plus / Plus

                                                                            
Query: 75       agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 134
                |||| ||||| ||||||||||| |||||| | |  |||||||||||||||||  ||||||
Sbjct: 11685796 agcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaa 11685855

                                                                            
Query: 135      gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 194
                ||||||||||||| ||||| |||| ||| ||||||||||  |||||||| |||||  | |
Sbjct: 11685856 gccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaa 11685915

                                                                            
Query: 195      gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 254
                 ||||||||| ||||||||  |||| |||  |||| |||||||||| ||||||||||| |
Sbjct: 11685916 acttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaa 11685975

                                                                            
Query: 255      acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 314
                | |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| |
Sbjct: 11685976 atgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcg 11686035

                                                                            
Query: 315      atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 374
                |||| || ||||| || |||||| |   |||||| |  ||  | |||||||| ||||| |
Sbjct: 11686036 atgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgatt 11686095

                                   
Query: 375      catccatggacatgcattc 393
                |||||||||||||||||||
Sbjct: 11686096 catccatggacatgcattc 11686114



 Score =  103 bits (52), Expect = 4e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                            
Query: 5        tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 64
                |||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 11684247 tatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcc 11684306

                            
Query: 65       tcgcacgtccag 76
                |||||| |||||
Sbjct: 11684307 tcgcacatccag 11684318



to top

>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score =  212 bits (107), Expect = 6e-52
 Identities = 266/319 (83%)
 Strand = Plus / Plus

                                                                          
Query: 75     agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 134
              |||| ||||| ||||||||||| |||||| | |  |||||||||||||||||  ||||||
Sbjct: 120430 agcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaa 120489

                                                                          
Query: 135    gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 194
              ||||||||||||| ||||| |||| ||| ||||||||||  |||||||| |||||  | |
Sbjct: 120490 gccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaa 120549

                                                                          
Query: 195    gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 254
               ||||||||| ||||||||  |||| |||  |||| |||||||||| ||||||||||| |
Sbjct: 120550 acttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaa 120609

                                                                          
Query: 255    acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 314
              | |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| |
Sbjct: 120610 atgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcg 120669

                                                                          
Query: 315    atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 374
              |||| || ||||| || |||||| |   |||||| |  ||  | |||||||| ||||| |
Sbjct: 120670 atgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgatt 120729

                                 
Query: 375    catccatggacatgcattc 393
              |||||||||||||||||||
Sbjct: 120730 catccatggacatgcattc 120748



 Score =  103 bits (52), Expect = 4e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                          
Query: 5      tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 64
              |||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 118881 tatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcc 118940

                          
Query: 65     tcgcacgtccag 76
              |||||| |||||
Sbjct: 118941 tcgcacatccag 118952



to top

>gb|AY107736.1| Zea mays PCO090313 mRNA sequence
          Length = 1090

 Score =  184 bits (93), Expect = 1e-43
 Identities = 318/393 (80%)
 Strand = Plus / Plus

                                                                       
Query: 5   tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 64
           |||||||||||| | || ||||| |||||||| |||||||| ||||| | |||| |||||
Sbjct: 408 tatgaatggatcctgaggcagcacgaaaatggtttgaggctaacagttgctgatgtagcc 467

                                                                       
Query: 65  tcgcacgtccagcatgagattcagtatggaggcgacaatccgttggcctctccaagatca 124
           || ||  ||||||||||||||||||||||||| |||||| | |  ||||||||||| |||
Sbjct: 468 tcccatatccagcatgagattcagtatggaggtgacaatgcatcagcctctccaaggtca 527

                                                                       
Query: 125 caatatgcaagccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaa 184
           |||||  | ||||||||||||    | ||  |||| || ||||||||||||| |||||||
Sbjct: 528 caataccctagccaaagcactgcaccgacaatgcacattcccaacacaagcaaccagcaa 587

                                                                       
Query: 185 ccatctgcgagcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcg 244
           |||||  | |||||||||||   ||||||||| |||||||| ||| ||||||| ||   |
Sbjct: 588 ccatcgccaagcttatttgcttcaggaaaccctgggttgacacagtccaagaattccatg 647

                                                                       
Query: 245 gtcttttccaacgcactatccagccccgtgcgccggggcctgcaaccataccatctggat 304
           |||||||| | |||| ||||||||||| | || ||| |||||| ||| ||||| || || 
Sbjct: 648 gtcttttcaagcgcattatccagccccatccggcggagcctgccaccttaccacctagag 707

                                                                       
Query: 305 cagggtggggatgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggct 364
           ||||  ||||||||||| ||||| ||||||||      ||||||   ||| |||||||||
Sbjct: 708 caggacggggatgcagggtacttcgcgaacggtgcaagccgcgatgtgaaccccacggct 767

                                            
Query: 365 tcaaacgactcatccatggacatgcattcggac 397
           || || || || |||||||||||||| ||||||
Sbjct: 768 tcgaatgattcgtccatggacatgcactcggac 800



to top

>gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence
          Length = 1357

 Score =  157 bits (79), Expect = 3e-35
 Identities = 262/323 (81%)
 Strand = Plus / Plus

                                                                        
Query: 75   agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 134
            |||||||||||||||||||||| |||||| | |  ||||||||||| ||||||||  | |
Sbjct: 770  agcatgagattcagtatggaggtgacaatgcatcagcctctccaaggtcacaatacccta 829

                                                                        
Query: 135  gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 194
            |||||||||||    | ||  |||| || ||||||||||||| ||||||||||||  | |
Sbjct: 830  gccaaagcactgcaccgacaatgcacattcccaacacaagcaaccagcaaccatcgccaa 889

                                                                        
Query: 195  gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 254
            |||||||||| | ||||||||| |||||||| ||| ||||||| ||   ||||||||| |
Sbjct: 890  gcttatttgctccaggaaaccctgggttgacacagtccaagaattccatggtcttttcaa 949

                                                                        
Query: 255  acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 314
             |||| ||||||||||| | || ||| |||||||||| ||||| || || ||||  ||||
Sbjct: 950  gcgcattatccagccccatccggcggagcctgcaaccttaccacctagagcaggacgggg 1009

                                                                        
Query: 315  atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 374
            ||||||| ||||| ||||||||      ||||||   ||| ||||||||||| || || |
Sbjct: 1010 atgcagggtacttcgcgaacggtgcaagccgcgatgtgaaccccacggcttcgaatgatt 1069

                                   
Query: 375  catccatggacatgcattcggac 397
            | |||||||||||||| ||||||
Sbjct: 1070 cgtccatggacatgcactcggac 1092



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 5   tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 64
           |||||||||||| | || ||||| |||||||| |||||||| ||||| | |||| |||||
Sbjct: 360 tatgaatggatcctgaggcagcacgaaaatggtttgaggctaacagttgctgatgtagcc 419

             
Query: 65  tc 66
           ||
Sbjct: 420 tc 421



to top

>ref|XM_482242.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 911

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 80
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 268 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 327

                                  
Query: 81  agattcagtatggaggcgacaat 103
           ||||| |||||||||| ||||||
Sbjct: 328 agattgagtatggaggtgacaat 350



to top

>ref|XM_507223.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA
          Length = 1009

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 80
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 289 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 348

                                  
Query: 81  agattcagtatggaggcgacaat 103
           ||||| |||||||||| ||||||
Sbjct: 349 agattgagtatggaggtgacaat 371



to top

>ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA
          Length = 1358

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 80
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 374 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 433

                                  
Query: 81  agattcagtatggaggcgacaat 103
           ||||| |||||||||| ||||||
Sbjct: 434 agattgagtatggaggtgacaat 456



to top

>dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A02, full
           insert sequence
          Length = 1358

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 80
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 374 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 433

                                  
Query: 81  agattcagtatggaggcgacaat 103
           ||||| |||||||||| ||||||
Sbjct: 434 agattgagtatggaggtgacaat 456



to top

>dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089E18, full
           insert sequence
          Length = 913

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 80
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 268 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 327

                                  
Query: 81  agattcagtatggaggcgacaat 103
           ||||| |||||||||| ||||||
Sbjct: 328 agattgagtatggaggtgacaat 350



to top

>dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D12, full
           insert sequence
          Length = 1009

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 80
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 289 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 348

                                  
Query: 81  agattcagtatggaggcgacaat 103
           ||||| |||||||||| ||||||
Sbjct: 349 agattgagtatggaggtgacaat 371



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 21       gacagcatgaaaatggcttgaggctgacagt 51
                |||||||||||| |||||||||||| |||||
Sbjct: 18951508 gacagcatgaaattggcttgaggctcacagt 18951538



to top

>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 21    gacagcatgaaaatggcttgaggctgacagt 51
             |||||||||||| |||||||||||| |||||
Sbjct: 36428 gacagcatgaaattggcttgaggctcacagt 36458



to top

>gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 map 4p16, complete sequence
          Length = 185393

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 25     gcatgaaaatggcttgaggctga 47
              |||||||||||||||||||||||
Sbjct: 132570 gcatgaaaatggcttgaggctga 132548



to top

>emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in linkage group 6, complete
              sequence
          Length = 202848

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     aagacagcatgaaaatggct 38
              ||||||||||||||||||||
Sbjct: 121819 aagacagcatgaaaatggct 121800



to top

>gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    tccaagatcacaatatgcaa 134
              ||||||||||||||||||||
Sbjct: 112070 tccaagatcacaatatgcaa 112051



to top

>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    ccgtgcgccggggcctgcaaccat 293
              ||||||||||||||||||| ||||
Sbjct: 715484 ccgtgcgccggggcctgcacccat 715507



to top

>emb|AL135793.13| Human DNA sequence from clone RP11-296H2 on chromosome 10 Contains the 3'
              end of the TACC2 gene for transforming, acidic coiled-coil
              containing protein 2 (AZU-1), the gene for a novel protein
              (FLJ25359) and two CpG islands, complete sequence
          Length = 213861

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     ggctgacagtgggtgatata 61
              ||||||||||||||||||||
Sbjct: 135741 ggctgacagtgggtgatata 135722



to top

>gb|AC016919.15| Homo sapiens 3 BAC RP11-220J13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165714

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    gcaagccaaagcactcaggc 150
              ||||||||||||||||||||
Sbjct: 140245 gcaagccaaagcactcaggc 140226



to top

>emb|X58831.1|CSGDHANC C.sorokiniana gdhANC gene for NADP-specific glutamate dehydrogenase
            (ANC=Ammonium-inducible, Nuclear encoded, Chloroplastic
            isoenzyme)
          Length = 9872

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cgactcatccatggacatgc 389
            ||||||||||||||||||||
Sbjct: 9375 cgactcatccatggacatgc 9356



to top

>emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 in linkage group 6,
             complete sequence
          Length = 173467

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aagacagcatgaaaatggct 38
             ||||||||||||||||||||
Sbjct: 22637 aagacagcatgaaaatggct 22656



to top

>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6, complete
              sequence
          Length = 254657

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     aagacagcatgaaaatggct 38
              ||||||||||||||||||||
Sbjct: 184424 aagacagcatgaaaatggct 184443



to top

>emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 in linkage group 14,
              complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     gaggctgacagtgggtgata 59
              ||||||||||||||||||||
Sbjct: 159286 gaggctgacagtgggtgata 159267



to top

>emb|BX510330.20| Zebrafish DNA sequence from clone DKEYP-82B3 in linkage group 13,
             complete sequence
          Length = 96887

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    gaggctgacagtgggtgata 59
             ||||||||||||||||||||
Sbjct: 60479 gaggctgacagtgggtgata 60460


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,457,559
Number of Sequences: 3902068
Number of extensions: 2457559
Number of successful extensions: 45189
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45124
Number of HSP's gapped (non-prelim): 65
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top