>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 103 GRQGAPQGPRPEAPGPGQRRAPQGQAQP 186
           G  GAP GPRP+  G GQ RAP+ Q  P
Sbjct: 242 GGAGAPGGPRPQGAG-GQDRAPRPQGGP 268

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 106 RQGAPQGPRPEAPGPGQR-RAPQGQAQP 186
           R GA  GP PE P P QR  APQ  A+P
Sbjct: 553 RSGAGPGPPPEPPPPSQRGSAPQSGAKP 580

>ZN553_HUMAN (Q96MX3) Zinc finger protein 553|
          Length = 618

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 118 PQGPRPEAPGPGQRRAPQGQAQPEIDELC 204
           P GP P AP P  R  P G +QP +   C
Sbjct: 520 PPGPVPMAPRPRVRAQPSGPSQPHVCGFC 548

>GRHL2_MOUSE (Q8K5C0) Grainyhead-like protein 2 homolog (Brother of mammalian|
           grainyhead) (Transcription factor CP2-like 3)
          Length = 625

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 155 SDVLHKVKLSLKSMSFAPEASEEVPPLDLNELLAYFLKQSGPLFDQLGIKRDVCDKLVES 334
           S VL K         F P  S+++   ++  +L Y  K++  +FD L +K      L+E+
Sbjct: 507 SSVLVKRMFRPMEEEFGPTPSKQIKEENVKRVLLYVRKENDDVFDALMLKSPTVKGLMEA 566

Query: 335 LCSK 346
           L  K
Sbjct: 567 LSEK 570

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 103 GRQGAPQGPRPEAPGPGQRRAPQG 174
           G  GAP+GP    PG G RR P G
Sbjct: 522 GPGGAPRGPGGRPPGGGNRRPPGG 545

>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)|
          Length = 543

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 115 APQGPRPEAPGPG--QRRAPQGQAQPE 189
           APQGP P+ PG G  Q++ PQ  A P+
Sbjct: 419 APQGPPPQQPGYGYPQQQQPQRYATPQ 445

>SC10A_MOUSE (Q6QIY3) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (Peripheral nerve
           sodium channel 3) (Sensory neuron sodium channel)
          Length = 1958

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 PQGPRPEAPGPGQRRAPQGQAQPEIDEL 201
           P+ P P++P PG RR  +GQ      EL
Sbjct: 549 PRSPLPQSPNPGPRRGEEGQRGVPTGEL 576

>C1QT5_RAT (Q5FVH0) Complement C1q tumor necrosis factor-related protein 5|
           precursor
          Length = 243

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
 Frame = +1

Query: 103 GRQGAP-------QGPRPEAPGPGQRRAPQGQAQP 186
           GR GAP       +G RP  PGP     P+G+A P
Sbjct: 54  GRDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGP 88

>C1QT5_MOUSE (Q8K479) Complement C1q tumor necrosis factor-related protein 5|
           precursor
          Length = 243

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
 Frame = +1

Query: 103 GRQGAP-------QGPRPEAPGPGQRRAPQGQAQP 186
           GR GAP       +G RP  PGP     P+G+A P
Sbjct: 54  GRDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGP 88

>YAED_SCHPO (Q09853) Hypothetical protein C23D3.13c in chromosome I|
          Length = 1616

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 263 LKQSGPLFDQLGIKRDVCDKLVESLCSKRKDHFVYDPLSTSESSSFRNDNTCDELDLRIA 442
           L++S  +F    I   VC   ++     + DH  +  +S S S  F+  N   EL  R A
Sbjct: 768 LRKSSEVFYSFSILETVCSCNLDRFLDSKLDHSGWSLISKSLSEVFKIINVAPELRTRAA 827

Query: 443 SVL 451
           + L
Sbjct: 828 NCL 830

>E1A_ADE07 (P03256) Early E1A 28 kDa protein|
          Length = 261

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 209 EASEEVPPLDLNELLAYFLKQSGPLFDQLGIKRDVCDKLVESLCSKRKD-HFVYDPLSTS 385
           +A+ +V  LD  EL  +  K      +  G+K  +C     SLC  R   HF+Y P+S  
Sbjct: 145 KAASDVFKLDCPELPGHGCKSCEFHRNNTGMKELLC-----SLCYMRMHCHFIYSPVSDD 199

Query: 386 ESSS 397
           ES S
Sbjct: 200 ESPS 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,606,681
Number of Sequences: 219361
Number of extensions: 1344823
Number of successful extensions: 5246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5209
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)