| Clone Name | baal7j23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L13, full insert sequence Length = 1255 Score = 442 bits (223), Expect = e-121 Identities = 469/551 (85%) Strand = Plus / Plus Query: 61 gcagggagatatgttgaaccggagatccaaatgcactagcagaaagctactgactactgt 120 ||||||| ||||||||| ||| ||| ||||||| || ||||| | || |||||| || Sbjct: 103 gcagggaagtatgttgaattggaaatctaaatgcagtaccagaagtccacggactacagt 162 Query: 121 tactggtgcaaagggtgatgaatctgaatttgatagcgtcaatgcaccacttgagcccca 180 | ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||| Sbjct: 163 tgctggtgcaaagcctgatgactctgaatttgaaagtgtcaatgcaccactcgagcccca 222 Query: 181 aacttgggaagggagcttcttgtgtggcttattgaagaaccagcctcaaatttttctagt 240 ||| |||||||| |||||||||||||| || |||||||||||||| ||| | | | ||| Sbjct: 223 aacgtgggaaggaagcttcttgtgtggtttgttgaagaaccagccacaagtactcccagt 282 Query: 241 agctgcagcaaggcaacttcagcaactgtctattcaaaggaaagacacactgacccgctg 300 ||||| |||| ||||||||| |||| |||| |||||| || ||||| ||| |||||| Sbjct: 283 tgctgcggcaaagcaacttcaagaactatctaatcaaagaaaggacaccttgatccgctg 342 Query: 301 ggaacatagtatcggttctcccgaggactgtcttcacaggagaattgctgaaatgaagga 360 ||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 343 ggaacatagcatcggttctcctgaggactgccttcacaggaggattgctgaaatgaagga 402 Query: 361 gcaggagtgcaggactgctattgaggacgtcatgtacatgttgattgttcataaatattc 420 ||| |||||| ||||||||||||||| ||||||||| ||||||||| |||||| || Sbjct: 403 gcatgagtgccagactgctattgaggatatcatgtacactttgattgtttataaattttt 462 Query: 421 caagattgaggttccgatggttccgaatctatcaaaaatcatcaataatagaagattaca 480 ||||||||| ||||| ||||||| ||||||||||| | |||| |||| |||| |||| Sbjct: 463 caagattgaagttccattggttccaaatctatcaaagcttatcagcaataaaagactaca 522 Query: 481 tatatggccaccaagggaggcagatcttgaatccattcatggatctgaggtgctatgtca 540 ||||||||||||||||||||||| || ||||| ||||||||| ||||||||||| || Sbjct: 523 aatatggccaccaagggaggcagaactagaatcaattcatggacctgaggtgctaggttt 582 Query: 541 aattagggagcacttgactagcattatcagatgggtgcacaggaatggccccaagatcaa 600 ||||||||| |||||||| || |||||||||||||| || || ||||| ||||||||||| Sbjct: 583 aattagggaacacttgaccagtattatcagatgggtacatagaaatggtcccaagatcaa 642 Query: 601 tcgctcaacac 611 ||||||||||| Sbjct: 643 tcgctcaacac 653
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 250 bits (126), Expect = 5e-63 Identities = 237/274 (86%) Strand = Plus / Minus Query: 338 aggagaattgctgaaatgaaggagcaggagtgcaggactgctattgaggacgtcatgtac 397 ||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| Sbjct: 95267 aggaggattgctgaaatgaaggagcatgagtgccagactgctattgaggatatcatgtac 95208 Query: 398 atgttgattgttcataaatattccaagattgaggttccgatggttccgaatctatcaaaa 457 | ||||||||| |||||| || ||||||||| ||||| ||||||| ||||||||||| Sbjct: 95207 actttgattgtttataaatttttcaagattgaagttccattggttccaaatctatcaaag 95148 Query: 458 atcatcaataatagaagattacatatatggccaccaagggaggcagatcttgaatccatt 517 | |||| |||| |||| |||| ||||||||||||||||||||||| || ||||| ||| Sbjct: 95147 cttatcagcaataaaagactacaaatatggccaccaagggaggcagaactagaatcaatt 95088 Query: 518 catggatctgaggtgctatgtcaaattagggagcacttgactagcattatcagatgggtg 577 |||||| ||||||||||| || ||||||||| |||||||| || |||||||||||||| Sbjct: 95087 catggacctgaggtgctaggtttaattagggaacacttgaccagtattatcagatgggta 95028 Query: 578 cacaggaatggccccaagatcaatcgctcaacac 611 || || ||||| |||||||||||||||||||||| Sbjct: 95027 catagaaatggtcccaagatcaatcgctcaacac 94994 Score = 196 bits (99), Expect = 6e-47 Identities = 228/271 (84%) Strand = Plus / Minus Query: 70 tatgttgaaccggagatccaaatgcactagcagaaagctactgactactgttactggtgc 129 ||||||||| ||| ||| ||||||| || ||||| | || |||||| ||| ||||||| Sbjct: 96268 tatgttgaattggaaatctaaatgcagtaccagaagtccacggactacagttgctggtgc 96209 Query: 130 aaagggtgatgaatctgaatttgatagcgtcaatgcaccacttgagccccaaacttggga 189 |||| |||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct: 96208 aaagcctgatgactctgaatttgaaagtgtcaatgcaccactcgagccccaaacgtggga 96149 Query: 190 agggagcttcttgtgtggcttattgaagaaccagcctcaaatttttctagtagctgcagc 249 ||| |||||||||||||| || |||||||||||||| ||| | | | ||| ||||| || Sbjct: 96148 aggaagcttcttgtgtggtttgttgaagaaccagccacaagtactcccagttgctgcggc 96089 Query: 250 aaggcaacttcagcaactgtctattcaaaggaaagacacactgacccgctgggaacatag 309 || ||||||||| |||| |||| |||||| || ||||| ||| ||||||||||||||| Sbjct: 96088 aaagcaacttcaagaactatctaatcaaagaaaggacaccttgatccgctgggaacatag 96029 Query: 310 tatcggttctcccgaggactgtcttcacagg 340 ||||||||||| |||||||| ||||||||| Sbjct: 96028 catcggttctcctgaggactgccttcacagg 95998
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 250 bits (126), Expect = 5e-63 Identities = 237/274 (86%) Strand = Plus / Minus Query: 338 aggagaattgctgaaatgaaggagcaggagtgcaggactgctattgaggacgtcatgtac 397 ||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| Sbjct: 14872200 aggaggattgctgaaatgaaggagcatgagtgccagactgctattgaggatatcatgtac 14872141 Query: 398 atgttgattgttcataaatattccaagattgaggttccgatggttccgaatctatcaaaa 457 | ||||||||| |||||| || ||||||||| ||||| ||||||| ||||||||||| Sbjct: 14872140 actttgattgtttataaatttttcaagattgaagttccattggttccaaatctatcaaag 14872081 Query: 458 atcatcaataatagaagattacatatatggccaccaagggaggcagatcttgaatccatt 517 | |||| |||| |||| |||| ||||||||||||||||||||||| || ||||| ||| Sbjct: 14872080 cttatcagcaataaaagactacaaatatggccaccaagggaggcagaactagaatcaatt 14872021 Query: 518 catggatctgaggtgctatgtcaaattagggagcacttgactagcattatcagatgggtg 577 |||||| ||||||||||| || ||||||||| |||||||| || |||||||||||||| Sbjct: 14872020 catggacctgaggtgctaggtttaattagggaacacttgaccagtattatcagatgggta 14871961 Query: 578 cacaggaatggccccaagatcaatcgctcaacac 611 || || ||||| |||||||||||||||||||||| Sbjct: 14871960 catagaaatggtcccaagatcaatcgctcaacac 14871927 Score = 188 bits (95), Expect = 1e-44 Identities = 227/271 (83%) Strand = Plus / Minus Query: 70 tatgttgaaccggagatccaaatgcactagcagaaagctactgactactgttactggtgc 129 ||||||||| ||| ||| ||||||| || ||||| | || |||||| ||| ||||||| Sbjct: 14873201 tatgttgaattggaaatctaaatgcagtaccagaagtccacggactacagttgctggtgc 14873142 Query: 130 aaagggtgatgaatctgaatttgatagcgtcaatgcaccacttgagccccaaacttggga 189 |||| |||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct: 14873141 aaagcctgatgactctgaatttgaaagtgtcaatgcaccactcgagccccaaacgtggga 14873082 Query: 190 agggagcttcttgtgtggcttattgaagaaccagcctcaaatttttctagtagctgcagc 249 ||| |||||||||||||| || |||||||||||||| ||| | | | ||| ||||| || Sbjct: 14873081 aggaagcttcttgtgtggtttgttgaagaaccagccacaagtactcccagttgctgcggc 14873022 Query: 250 aaggcaacttcagcaactgtctattcaaaggaaagacacactgacccgctgggaacatag 309 || ||||||||| |||| |||| |||||| || ||||| ||| ||||||||||||||| Sbjct: 14873021 aaagcaacttcaagaactatctaatcaaagaaaggacacgttgatccgctgggaacatag 14872962 Query: 310 tatcggttctcccgaggactgtcttcacagg 340 ||||||||||| || ||||| ||||||||| Sbjct: 14872961 catcggttctcctgacgactgccttcacagg 14872931
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 250 bits (126), Expect = 5e-63 Identities = 237/274 (86%) Strand = Plus / Minus Query: 338 aggagaattgctgaaatgaaggagcaggagtgcaggactgctattgaggacgtcatgtac 397 ||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| Sbjct: 14952168 aggaggattgctgaaatgaaggagcatgagtgccagactgctattgaggatatcatgtac 14952109 Query: 398 atgttgattgttcataaatattccaagattgaggttccgatggttccgaatctatcaaaa 457 | ||||||||| |||||| || ||||||||| ||||| ||||||| ||||||||||| Sbjct: 14952108 actttgattgtttataaatttttcaagattgaagttccattggttccaaatctatcaaag 14952049 Query: 458 atcatcaataatagaagattacatatatggccaccaagggaggcagatcttgaatccatt 517 | |||| |||| |||| |||| ||||||||||||||||||||||| || ||||| ||| Sbjct: 14952048 cttatcagcaataaaagactacaaatatggccaccaagggaggcagaactagaatcaatt 14951989 Query: 518 catggatctgaggtgctatgtcaaattagggagcacttgactagcattatcagatgggtg 577 |||||| ||||||||||| || ||||||||| |||||||| || |||||||||||||| Sbjct: 14951988 catggacctgaggtgctaggtttaattagggaacacttgaccagtattatcagatgggta 14951929 Query: 578 cacaggaatggccccaagatcaatcgctcaacac 611 || || ||||| |||||||||||||||||||||| Sbjct: 14951928 catagaaatggtcccaagatcaatcgctcaacac 14951895 Score = 196 bits (99), Expect = 6e-47 Identities = 228/271 (84%) Strand = Plus / Minus Query: 70 tatgttgaaccggagatccaaatgcactagcagaaagctactgactactgttactggtgc 129 ||||||||| ||| ||| ||||||| || ||||| | || |||||| ||| ||||||| Sbjct: 14953169 tatgttgaattggaaatctaaatgcagtaccagaagtccacggactacagttgctggtgc 14953110 Query: 130 aaagggtgatgaatctgaatttgatagcgtcaatgcaccacttgagccccaaacttggga 189 |||| |||||| ||||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct: 14953109 aaagcctgatgactctgaatttgaaagtgtcaatgcaccactcgagccccaaacgtggga 14953050 Query: 190 agggagcttcttgtgtggcttattgaagaaccagcctcaaatttttctagtagctgcagc 249 ||| |||||||||||||| || |||||||||||||| ||| | | | ||| ||||| || Sbjct: 14953049 aggaagcttcttgtgtggtttgttgaagaaccagccacaagtactcccagttgctgcggc 14952990 Query: 250 aaggcaacttcagcaactgtctattcaaaggaaagacacactgacccgctgggaacatag 309 || ||||||||| |||| |||| |||||| || ||||| ||| ||||||||||||||| Sbjct: 14952989 aaagcaacttcaagaactatctaatcaaagaaaggacaccttgatccgctgggaacatag 14952930 Query: 310 tatcggttctcccgaggactgtcttcacagg 340 ||||||||||| |||||||| ||||||||| Sbjct: 14952929 catcggttctcctgaggactgccttcacagg 14952899
>gb|AY108199.1| Zea mays PCO076094 mRNA sequence Length = 861 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 503 gatcttgaatccattcatggatctgaggtgctatgtcaaattagggagcacttgactagc 562 ||||||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||| Sbjct: 12 gatcttgaatccattcatggacctgaggtgctagagctaattagggaacacttgaccagc 71 Query: 563 attatcagatgggtgcacaggaatggccccaagatcaatcgctcaacac 611 |||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct: 72 attatcagatgggtgcacagaaatggtcccaagatcaatcgttcaacac 120
>gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome 17, complete sequence Length = 177231 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 454 aaaaatcatcaataatagaagat 476 ||||||||||||||||||||||| Sbjct: 44954 aaaaatcatcaataatagaagat 44976
>gb|AC098726.2| Mus musculus BAC clone RP23-3E20 from 17, complete sequence Length = 195690 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 454 aaaaatcatcaataatagaagat 476 ||||||||||||||||||||||| Sbjct: 194510 aaaaatcatcaataatagaagat 194532
>ref|XM_510825.1| PREDICTED: Pan troglodytes similar to BTG3 associated nuclear protein isoform b; BANP homolog; SMAR1 homolog (LOC453929), mRNA Length = 2028 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ctctcctccccgtccccgtgc 55 ||||||||||||||||||||| Sbjct: 1650 ctctcctccccgtccccgtgc 1670
>gb|BC083712.1| Rattus norvegicus MAF1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:94603 IMAGE:7190634), complete cds Length = 1649 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 ttgggaagggagcttcttgtg 204 ||||||||||||||||||||| Sbjct: 350 ttgggaagggagcttcttgtg 330
>emb|CR723774.2|CNS0GLES Tetraodon nigroviridis full-length cDNA Length = 1881 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 tgaaggagcaggagtgcagga 374 ||||||||||||||||||||| Sbjct: 1020 tgaaggagcaggagtgcagga 1040
>ref|XM_760653.1| Theileria parva strain Muguga chromosome 1 serine/threonine protein phosphatase (TP01_0219) partial mRNA Length = 2808 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 tctatcaaaaatcatcaataa 468 ||||||||||||||||||||| Sbjct: 1911 tctatcaaaaatcatcaataa 1891
>ref|XM_949411.1| Theileria annulata strain Ankara hypothetical protein (TA19470) partial mRNA Length = 2868 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 tctatcaaaaatcatcaataa 468 ||||||||||||||||||||| Sbjct: 1971 tctatcaaaaatcatcaataa 1951
>emb|CR682897.1|CNS0FPVH Tetraodon nigroviridis full-length cDNA Length = 1890 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 tgaaggagcaggagtgcagga 374 ||||||||||||||||||||| Sbjct: 1022 tgaaggagcaggagtgcagga 1042
>gb|AC116120.6| Mus musculus chromosome 6, clone RP23-78P7, complete sequence Length = 174411 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 actgtctattcaaaggaaaga 285 ||||||||||||||||||||| Sbjct: 33124 actgtctattcaaaggaaaga 33104
>ref|NM_001014085.1| Rattus norvegicus MAF1 homolog (S. cerevisiae) (Maf1), mRNA Length = 1649 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 ttgggaagggagcttcttgtg 204 ||||||||||||||||||||| Sbjct: 350 ttgggaagggagcttcttgtg 330
>emb|CR633825.2|CNS0EO13 Tetraodon nigroviridis full-length cDNA Length = 1886 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 tgaaggagcaggagtgcagga 374 ||||||||||||||||||||| Sbjct: 1024 tgaaggagcaggagtgcagga 1044
>emb|BX649266.9| Zebrafish DNA sequence from clone DKEY-19J7 in linkage group 9, complete sequence Length = 235135 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 gtgtggcttattgaagaacca 222 ||||||||||||||||||||| Sbjct: 13446 gtgtggcttattgaagaacca 13426
>gb|AC008740.7| Homo sapiens chromosome 16 clone CTD-2547E10, complete sequence Length = 158388 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 ctctcctccccgtccccgtgc 55 ||||||||||||||||||||| Sbjct: 95596 ctctcctccccgtccccgtgc 95576
>gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 215272 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 ttgggaagggagcttcttgtg 204 ||||||||||||||||||||| Sbjct: 24073 ttgggaagggagcttcttgtg 24053
>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence Length = 200812 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 ctctcctccccgtccccgtgc 55 ||||||||||||||||||||| Sbjct: 196972 ctctcctccccgtccccgtgc 196952
>gb|AC134312.3| Homo sapiens chromosome 16 clone RP11-863P13, complete sequence Length = 205610 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ctctcctccccgtccccgtgc 55 ||||||||||||||||||||| Sbjct: 42582 ctctcctccccgtccccgtgc 42602
>gb|AC127455.4| Homo sapiens chromosome 16 clone CTD-3057O21, complete sequence Length = 184641 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 ctctcctccccgtccccgtgc 55 ||||||||||||||||||||| Sbjct: 54193 ctctcctccccgtccccgtgc 54173
>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence Length = 171940 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ctctcctccccgtccccgtgc 55 ||||||||||||||||||||| Sbjct: 71101 ctctcctccccgtccccgtgc 71121
>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6, complete sequence Length = 214158 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 ggtgatgaatctgaatttgat 154 ||||||||||||||||||||| Sbjct: 146240 ggtgatgaatctgaatttgat 146220
>ref|NM_112973.2| Arabidopsis thaliana protein binding AT3G20820 mRNA, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgaatctgaatttga 153 |||||||||||||||||||| Sbjct: 865 ggtgatgaatctgaatttga 884
>ref|XM_639869.1| Dictyostelium discoideum hypothetical protein (DDB0217088), partial mRNA Length = 1794 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 atcatcaataatagaagattacat 481 ||||||||||||| |||||||||| Sbjct: 478 atcatcaataataaaagattacat 501
>ref|XM_630871.1| Dictyostelium discoideum hypothetical protein (DDB0188627), partial mRNA Length = 3060 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 451 atcaaaaatcatcaataatagaagatta 478 |||||| | ||||||||||||||||||| Sbjct: 2042 atcaaatagcatcaataatagaagatta 2069
>gb|AC166053.4| Mus musculus BAC clone RP24-122P17 from chromosome 14, complete sequence Length = 205155 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 51256 atgttgattgttcataaata 51275
>ref|XM_525070.1| PREDICTED: Pan troglodytes LOC469686 (LOC469686), mRNA Length = 3735 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 2218 attgaagaaccagcctcaaa 2237
>gb|AC158358.5| Mus musculus BAC clone RP23-429K3 from chromosome 14, complete sequence Length = 198706 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 175183 atgttgattgttcataaata 175202
>gb|AC150492.2| Bos taurus BAC CH240-454H24 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 185197 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 attgttcataaatattccaa 423 |||||||||||||||||||| Sbjct: 121988 attgttcataaatattccaa 121969
>ref|XM_425591.1| PREDICTED: Gallus gallus similar to Tripeptidyl-peptidase II (TPP-II) (Tripeptidyl aminopeptidase) (LOC428020), mRNA Length = 3975 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 atgaatctgaatttgatagc 157 |||||||||||||||||||| Sbjct: 2711 atgaatctgaatttgatagc 2730
>gb|BC007638.1| Homo sapiens hypothetical protein FLJ13840, mRNA (cDNA clone MGC:15905 IMAGE:3533045), complete cds Length = 2586 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 1032 attgaagaaccagcctcaaa 1051
>ref|XM_712995.1| Candida albicans SC5314 hypothetical protein (CaO19_5752), mRNA Length = 1914 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 aatctatcaaaaatcatcaataat 469 |||||||||||| ||||||||||| Sbjct: 114 aatctatcaaaattcatcaataat 137
>gb|AC127584.3| Mus musculus BAC clone RP24-126H1 from chromosome 14, complete sequence Length = 154930 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 11601 atgttgattgttcataaata 11582
>ref|NM_024746.2| Homo sapiens KIAA1822-like (KIAA1822L), mRNA Length = 2514 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 1046 attgaagaaccagcctcaaa 1065
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aggagcaggagtgcaggact 376 |||||||||||||||||||| Sbjct: 4916958 aggagcaggagtgcaggact 4916977
>gb|AC164618.3| Mus musculus BAC clone RP23-304L22 from chromosome 14, complete sequence Length = 208291 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 184777 atgttgattgttcataaata 184796
>gb|AY190958.1| Drosophila virilis clone DVIF01_45_J10 (D1457) genomic sequence Length = 44255 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tggcttattgaagaaccagc 224 |||||||||||||||||||| Sbjct: 333 tggcttattgaagaaccagc 314
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aggagcaggagtgcaggact 376 |||||||||||||||||||| Sbjct: 78589 aggagcaggagtgcaggact 78570
>gb|AC125198.4| Mus musculus BAC clone RP23-254B9 from 14, complete sequence Length = 205392 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 66002 atgttgattgttcataaata 65983
>ref|XM_723934.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01295) partial mRNA Length = 1926 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 aataatagaagattacatatatgg 487 ||||||||||||||| |||||||| Sbjct: 498 aataatagaagattatatatatgg 521
>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence Length = 256556 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ctgcagcaaggcaacttcag 262 |||||||||||||||||||| Sbjct: 91459 ctgcagcaaggcaacttcag 91478
>ref|XM_733636.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301918.00.0) partial mRNA Length = 993 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 aataatagaagattacatatatgg 487 ||||||||||||||| |||||||| Sbjct: 102 aataatagaagattatatatatgg 125
>gb|AY358602.1| Homo sapiens clone DNA73775 LRTS841 (UNQ841) mRNA, complete cds Length = 2564 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 1028 attgaagaaccagcctcaaa 1047
>ref|XM_675280.1| Plasmodium berghei strain ANKA hypothetical protein (PB001101.02.0) partial mRNA Length = 930 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 aataatagaagattacatatatgg 487 ||||||||||||||| |||||||| Sbjct: 498 aataatagaagattatatatatgg 521
>emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chromosome 1 Contains the gene for a novel protein (FLJ13840), the TAF1A gene for TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa, two novel genes, the gene for C219-reactive peptide (FLJ39207), the 3' of the gene for a novel protein (FLJ12806) and a CpG island, complete sequence Length = 194034 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 46493 attgaagaaccagcctcaaa 46474
>emb|AL451061.8| Human DNA sequence from clone RP11-291C6 on chromosome 6 Contains an alpha-methylacyl-CoA racemase (AMACR) pseudogene and a CpG island, complete sequence Length = 91503 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 tcaaaggaaagacacactga 293 |||||||||||||||||||| Sbjct: 82592 tcaaaggaaagacacactga 82611
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 aaaatcatcaataatagaag 474 |||||||||||||||||||| Sbjct: 1560857 aaaatcatcaataatagaag 1560838
>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13 Contains part of a gene encoding a novel protein,, complete sequence Length = 116857 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 atggccaccaagggaggcag 503 |||||||||||||||||||| Sbjct: 110592 atggccaccaagggaggcag 110573
>gb|AC157807.4| Mus musculus chromosome 1, clone RP24-363O2, complete sequence Length = 165344 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 gactactgttactggtgcaaaggg 135 ||||||||| |||||||||||||| Sbjct: 597 gactactgtgactggtgcaaaggg 620
>gb|AY117334.1| Arabidopsis thaliana unknown protein (At3g20820) mRNA, complete cds Length = 1129 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgaatctgaatttga 153 |||||||||||||||||||| Sbjct: 813 ggtgatgaatctgaatttga 832
>gb|AY063922.1| Arabidopsis thaliana unknown protein (At3g20820) mRNA, complete cds Length = 1301 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgaatctgaatttga 153 |||||||||||||||||||| Sbjct: 865 ggtgatgaatctgaatttga 884
>gb|AC164631.5| Mus musculus 6 BAC RP23-359M3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 237469 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cagcaaggcaacttcagcaa 265 |||||||||||||||||||| Sbjct: 75593 cagcaaggcaacttcagcaa 75612
>gb|AC099507.3| Homo sapiens chromosome 5 clone RP11-24H18, complete sequence Length = 187386 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tggcagcagggagatatgtt 75 |||||||||||||||||||| Sbjct: 9654 tggcagcagggagatatgtt 9635
>gb|AC149581.27| Medicago truncatula clone mth2-126m13, complete sequence Length = 102206 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcatgtacatgttgattgtt 409 |||||||||||||||||||| Sbjct: 65638 tcatgtacatgttgattgtt 65619
>dbj|AK023902.1| Homo sapiens cDNA FLJ13840 fis, clone THYRO1000783, moderately similar to Xenopus laevis tail-specific thyroid hormone up-regulated (gene 5) mRNA Length = 2252 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 731 attgaagaaccagcctcaaa 750
>gb|AC010362.6| Homo sapiens chromosome 5 clone CTD-2037I18, complete sequence Length = 133769 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tggcagcagggagatatgtt 75 |||||||||||||||||||| Sbjct: 94296 tggcagcagggagatatgtt 94277
>gb|AC092811.2| Homo sapiens chromosome 1 clone RP11-496N12, complete sequence Length = 192618 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 aaatttttctagtagctgca 247 |||||||||||||||||||| Sbjct: 32305 aaatttttctagtagctgca 32324
>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence Length = 225957 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ctgcagcaaggcaacttcag 262 |||||||||||||||||||| Sbjct: 57126 ctgcagcaaggcaacttcag 57107
>gb|AC010429.6|AC010429 Homo sapiens chromosome 5 clone CTD-2199L14, complete sequence Length = 133769 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tggcagcagggagatatgtt 75 |||||||||||||||||||| Sbjct: 94296 tggcagcagggagatatgtt 94277
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aggagcaggagtgcaggact 376 |||||||||||||||||||| Sbjct: 4916173 aggagcaggagtgcaggact 4916192
>gb|BC016552.1| Homo sapiens KIAA1822-like, mRNA (cDNA clone MGC:22143 IMAGE:4452939), complete cds Length = 2514 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 1046 attgaagaaccagcctcaaa 1065
>gb|BC015201.1| Homo sapiens KIAA1822-like, mRNA (cDNA clone IMAGE:3889322), complete cds Length = 1268 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 attgaagaaccagcctcaaa 230 |||||||||||||||||||| Sbjct: 637 attgaagaaccagcctcaaa 656
>emb|BX822904.1|CNS0A5ZE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 701 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgaatctgaatttga 153 |||||||||||||||||||| Sbjct: 266 ggtgatgaatctgaatttga 285
>emb|BX825333.1|CNS0A55L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL2ZC08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1191 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgaatctgaatttga 153 |||||||||||||||||||| Sbjct: 862 ggtgatgaatctgaatttga 881
>gb|AC149055.6| Mus musculus BAC clone RP23-358K1 from chromosome 7, complete sequence Length = 215193 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ccccaaacttgggaagggag 195 |||||||||||||||||||| Sbjct: 153845 ccccaaacttgggaagggag 153826
>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence Length = 254733 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 atcatcaataatagaagattacat 481 ||||||||||||| |||||||||| Sbjct: 77639 atcatcaataataaaagattacat 77616
>gb|AC102242.10| Mus musculus chromosome 1, clone RP24-141F9, complete sequence Length = 146925 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 gactactgttactggtgcaaaggg 135 ||||||||| |||||||||||||| Sbjct: 12180 gactactgtgactggtgcaaaggg 12203
>gb|AC129185.4| Mus musculus BAC clone RP23-368D4 from chromosome 14, complete sequence Length = 163621 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 25365 atgttgattgttcataaata 25384
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tgatgaatctgaatttgata 155 |||||||||||||||||||| Sbjct: 308773 tgatgaatctgaatttgata 308792
>dbj|AB025629.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOE17 Length = 81677 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgaatctgaatttga 153 |||||||||||||||||||| Sbjct: 42305 ggtgatgaatctgaatttga 42324
>emb|AL590078.2|HS381K22 Homo sapiens chromosome 9 BAC RP11-381K22, complete sequence Length = 203175 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ttattgaagaaccagcctca 228 |||||||||||||||||||| Sbjct: 16962 ttattgaagaaccagcctca 16943
>emb|AL442639.2|HS5P15 Homo sapiens chromosome 9 BAC RP11-5P15, complete sequence Length = 165299 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ttattgaagaaccagcctca 228 |||||||||||||||||||| Sbjct: 22440 ttattgaagaaccagcctca 22459
>gb|AC141567.4| Mus musculus BAC clone RP23-9D13 from 14, complete sequence Length = 248787 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 47235 atgttgattgttcataaata 47254
>gb|AC132468.4| Mus musculus BAC clone RP23-78D19 from 14, complete sequence Length = 238544 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 203989 atgttgattgttcataaata 204008
>gb|AC131650.5| Mus musculus BAC clone RP24-97G3 from chromosome 14, complete sequence Length = 162369 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 119096 atgttgattgttcataaata 119115
>dbj|AP002517.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-116P9, complete sequences Length = 173251 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 aatagaagattacatatatg 486 |||||||||||||||||||| Sbjct: 83825 aatagaagattacatatatg 83844
>gb|AC152888.4| Mus musculus BAC clone RP23-338C22 from chromosome 14, complete sequence Length = 201603 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 109079 atgttgattgttcataaata 109098
>gb|AC136642.4| Mus musculus BAC clone RP23-401J21 from 14, complete sequence Length = 168250 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 30659 atgttgattgttcataaata 30640
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence Length = 241077 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccccaaacttgggaagggag 195 |||||||||||||||||||| Sbjct: 237467 ccccaaacttgggaagggag 237486
>gb|AC168071.4| Mus musculus BAC clone RP23-97D14 from chromosome 14, complete sequence Length = 270731 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 atgttgattgttcataaata 417 |||||||||||||||||||| Sbjct: 175012 atgttgattgttcataaata 175031
>dbj|AB065501.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_64 Length = 56423 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 aatagaagattacatatatg 486 |||||||||||||||||||| Sbjct: 43383 aatagaagattacatatatg 43364 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,784,479 Number of Sequences: 3902068 Number of extensions: 5784479 Number of successful extensions: 118629 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118287 Number of HSP's gapped (non-prelim): 338 length of query: 611 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 588 effective length of database: 17,143,297,704 effective search space: 10080259049952 effective search space used: 10080259049952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)