ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7j21 |
|---|---|
| Clone Library Name | barley_pub |
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 37.0 bits (84), Expect = 0.036 Identities = 38/106 (35%), Positives = 40/106 (37%), Gaps = 10/106 (9%) Frame = +2 Query: 233 SPPGSSWPGKQRSTGWTRGPGTTASC---CSLEAWPSPGAKTP-STGLGTP*KKEGRNRD 400 SPPGS PG G GPG L G P S GL P G D Sbjct: 8 SPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP--APGAAAD 65 Query: 401 GGAAERL-----LAGGPREAGAVPSHARSHLRGLLRG-EARRPGLR 520 GGA L GGPR+ G RS RG L +A PG R Sbjct: 66 GGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPR 111
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 35.4 bits (80), Expect = 0.10 Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 1/116 (0%) Frame = +2 Query: 176 SGRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPS 355 +G S PG M P+ PR + PPG+ PG Q G PG PGA P Sbjct: 11 TGISVPGPMGPSGPR-GLPGPPGA--PGPQGFQGPPGEPG------------EPGASGPM 55 Query: 356 TGLGTP*KKEGRNRDGGAAERLLAGGPREAGAV-PSHARSHLRGLLRGEARRPGLR 520 G P G+N D G A + G P E G P AR L G A PG++ Sbjct: 56 GPRGPP-GPPGKNGDDGEAGK--PGRPGERGPPGPQGARG-----LPGTAGLPGMK 103
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 35.0 bits (79), Expect = 0.14 Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = +2 Query: 179 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 358 G S PG M P+ PR + PPG+ PG Q G PG PGA P Sbjct: 174 GISVPGPMGPSGPR-GLPGPPGA--PGPQGFQGPPGEPG------------EPGASGPMG 218 Query: 359 GLGTP*KKEGRNRDGGAAERLLAGGPREAGAV-PSHARSHLRGLLRGEARRPGLR 520 G P G+N D G A + G P E G P AR L G A PG++ Sbjct: 219 PRGPP-GPPGKNGDDGEAGK--PGRPGERGPPGPQGARG-----LPGTAGLPGMK 265
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 35.0 bits (79), Expect = 0.14 Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = +2 Query: 179 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 358 G S PG M P+ PR + PPG+ PG Q G PG PGA P Sbjct: 170 GISVPGPMGPSGPR-GLPGPPGA--PGPQGFQGPPGEPG------------EPGASGPMG 214 Query: 359 GLGTP*KKEGRNRDGGAAERLLAGGPREAGAV-PSHARSHLRGLLRGEARRPGLR 520 G P G+N D G A + G P E G P AR L G A PG++ Sbjct: 215 PRGPP-GPPGKNGDDGEAGK--PGRPGERGPPGPQGARG-----LPGTAGLPGMK 261
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 33.1 bits (74), Expect = 0.52 Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 7/115 (6%) Frame = +2 Query: 188 SPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLG 367 SP P PR ++ SP W G + GW GP E PSPG + Sbjct: 390 SPQEREPG-PRDRVESP--REWGGTESPRGWEAGP--------REWGPSPGGRGDGP-RR 437 Query: 368 TP*KKEGRNRDGG------AAERLLAGGP-REAGAVPSHARSHLRGLLRGEARRP 511 P K+ GR G A GGP EAGA S G RG AR P Sbjct: 438 RPRKRRGRKGRMGRQLETTATSASATGGPAEEAGA--SAPEGQAGGGPRGRARGP 490
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 32.3 bits (72), Expect = 0.88 Identities = 38/137 (27%), Positives = 51/137 (37%), Gaps = 14/137 (10%) Frame = +2 Query: 173 CSGRSSPGRMS---PT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASC--------CSL 319 C PGR + P P + + GS+ P ++G GPG C+ Sbjct: 308 CQLSVPPGRAAAPPPGPPTASVFAGAGSA-PAPAPASGSGPGPGPAGLPAFLGAELGCAK 366 Query: 320 EAWP---SPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLL 490 +P SP A + GL T ++G D G GG AG PS + H+ G Sbjct: 367 AFYPASLSPPAAGTAAGLPTALLRQGLKTDAGGGA---GGGGAGAGQRPSFSIDHIMGHG 423 Query: 491 RGEARRPGLRVVDAGEP 541 G A PG G P Sbjct: 424 GGGAAPPGAGEGSPGPP 440
>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)| Length = 288 Score = 31.6 bits (70), Expect = 1.5 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = +2 Query: 257 GKQRSTGWTRG----PGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAERLL 424 G+++ G T G PG + A P+PGA P G G GR +GG A L Sbjct: 62 GRRKEAGGTAGEPRRPGAESRRSPAAAAPAPGAPVPGGGGGGGGGSPGRG-EGGPAALAL 120 Query: 425 AGGPREAG 448 G ++ G Sbjct: 121 HGAAKKGG 128
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 31.2 bits (69), Expect = 2.0 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 4/111 (3%) Frame = +2 Query: 194 GRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPS----PGAKTPSTG 361 G++ PT + P PGK G PG L P PG K G Sbjct: 957 GQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDP-GLSGTPGSPGLPGPKGSVGG 1015 Query: 362 LGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPG 514 +G P + G + + G P E GA +S L G+ G RPG Sbjct: 1016 MGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGI--GIPGRPG 1064
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 30.8 bits (68), Expect = 2.6 Identities = 23/76 (30%), Positives = 29/76 (38%) Frame = +2 Query: 191 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 370 PG + PT + K+ P +PG+Q G PG PGA G GT Sbjct: 855 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 902 Query: 371 P*KKEGRNRDGGAAER 418 P K R + G R Sbjct: 903 PGKPGPRGQRGPTGPR 918 Score = 30.0 bits (66), Expect = 4.4 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = +2 Query: 236 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 415 PPG++ P Q RGP + P P P T L P + G D G+ Sbjct: 482 PPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGP----PGTMLMLP-FRFGGGGDAGSKG 536 Query: 416 RLLAGGPREAGAVPSHARSHLRGLL--RGEARRPG 514 +++ +A A+ AR LRG G RPG Sbjct: 537 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 571
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 30.8 bits (68), Expect = 2.6 Identities = 23/76 (30%), Positives = 29/76 (38%) Frame = +2 Query: 191 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 370 PG + PT + K+ P +PG+Q G PG PGA G GT Sbjct: 857 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 904 Query: 371 P*KKEGRNRDGGAAER 418 P K R + G R Sbjct: 905 PGKPGPRGQRGPTGPR 920 Score = 30.0 bits (66), Expect = 4.4 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = +2 Query: 236 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 415 PPG++ P Q RGP + P P P T L P + G D G+ Sbjct: 484 PPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGP----PGTMLMLP-FRFGGGGDAGSKG 538 Query: 416 RLLAGGPREAGAVPSHARSHLRGLL--RGEARRPG 514 +++ +A A+ AR LRG G RPG Sbjct: 539 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 573
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 30.8 bits (68), Expect = 2.6 Identities = 23/76 (30%), Positives = 29/76 (38%) Frame = +2 Query: 191 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 370 PG + PT + K+ P +PG+Q G PG PGA G GT Sbjct: 857 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 904 Query: 371 P*KKEGRNRDGGAAER 418 P K R + G R Sbjct: 905 PGKPGPRGQRGPTGPR 920
>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)| (Unc-51-like kinase 1) Length = 1050 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 179 GRSSPGRMSPT*PRWKIRSPP-GSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPS 355 G + G SP+ + + SPP GS+ P R+ ++ GP +AS + P P ++ P+ Sbjct: 740 GARAGGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLVPGPCSEAPA 799 Query: 356 TGLGTP 373 L P Sbjct: 800 PELPAP 805
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 3.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 440 EAGAVPSHARSHLRGLLRGEARRPGLR 520 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>IP3KC_MOUSE (Q7TS72) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 3.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 440 EAGAVPSHARSHLRGLLRGEARRPGLR 520 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 30.4 bits (67), Expect = 3.3 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Frame = +2 Query: 254 PGKQRS---TGWTRGPGTTASCCSLEAWPSPGAKTPSTGL------GTP*KKEGRNRDGG 406 PG +S TG GT +L A P P +TP TGL + + G R G Sbjct: 424 PGDYKSPHVTGSGASAGTHKRMPALSATPVPADETPETGLKEKKHKASKRSRHGPGRPKG 483 Query: 407 AAERLLAGGPREAGAVPSHARSHLRG 484 + + GGP A PS + L G Sbjct: 484 SRNKEGTGGP----AAPSLPSAQLAG 505
>GATA6_RAT (P46153) Transcription factor GATA-6 (GATA-binding factor 6)| (DNA-binding protein GATA-GT2) Length = 441 Score = 30.4 bits (67), Expect = 3.3 Identities = 30/104 (28%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Frame = +2 Query: 242 GSSWPGKQRSTGWTRGPGTTASCCSLE-AWPSPGAKTPSTGLGTP*KKEGRNRDGGAAER 418 GS PG G GP A WP A +P G GG A Sbjct: 49 GSMLPGLPYLQGAGSGPSNHAGGAGAHPGWPQASADSPPYG-------------GGGAAG 95 Query: 419 LLAGGPREAGAVPSHARSHL-----RGLLRGEARRPGLRVVDAG 535 A GP AG+ +HA + + G AR PG V G Sbjct: 96 GGAAGPGGAGSATAHASARFPYSPSPPMANGAARDPGGYVAAGG 139
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 30.4 bits (67), Expect = 3.3 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Frame = +2 Query: 179 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 358 G+ S +P+ P ++ P S + S + PG T +PG +P Sbjct: 662 GKHSAAAAAPSPPPAGRKAAPSPSGRKRTPSNSSVQPPGLTEE--------APGPASP-- 711 Query: 359 GLGTP*KKEGRNRDGGAAERLLAGG-PREAGAVPSHARSHLRGLLR--GEARRP 511 TP + R R G +E AGG PR A S + LR R G A +P Sbjct: 712 ---TPPRARARGRGLGLSEPTDAGGPPRSAPEAASMLAAELRDKTRSLGRAEKP 762
>ACSA_NITEU (Q82SI5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 655 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 280 DERTRHNCFMLFPRGLAITWSEDPKYWTWHPLKEGRPE 393 D T H+ + G ITW + +W WH L G+P+ Sbjct: 215 DTATVHSVIVFRHTGTGITWQPERDHW-WHDLIAGQPD 251
>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1| Length = 657 Score = 30.0 bits (66), Expect = 4.4 Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Frame = +2 Query: 182 RSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEA--WPSPGAKTPS 355 RS G SPT P G PG W + PGT A+ +A P PG P+ Sbjct: 47 RSPDGPASPT------SGPVGR--PGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPA 98 Query: 356 TG---LGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRG 496 LG GR R E+ R +GA P R+ +R L RG Sbjct: 99 NWGYVLG------GRGRGPDEYEK------RYSGAFPPQLRAQMRDLARG 136
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 30.0 bits (66), Expect = 4.4 Identities = 38/130 (29%), Positives = 44/130 (33%), Gaps = 10/130 (7%) Frame = +2 Query: 182 RSSPGRMSPT*PRWKI-----RSPPGSSWPGKQRSTG--WTRGP-GTTASCCSLEAWPSP 337 + G + P PR R PPG PG G RGP G T P Sbjct: 1553 KGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPP 1612 Query: 338 GAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGL--LRGEARRP 511 G K G P R RDG E+ G P + G LRG +RG Sbjct: 1613 GEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEK 1672 Query: 512 GLRVVDAGEP 541 G D G+P Sbjct: 1673 G----DQGDP 1678
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 30.0 bits (66), Expect = 4.4 Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 3/124 (2%) Frame = +2 Query: 179 GRSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPST 358 GR + P P SPP P +Q+ PG AS A PG + Sbjct: 12 GRQGASKQQPAPPPQPPESPPPPPLPPQQQQPAQ---PGPAASPAGPPAPRGPGGRRAEP 68 Query: 359 GLGTP*KKEGRNRDGGAAERLL---AGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 529 G P GR+ GG + GG R RS LR L PG R+ Sbjct: 69 CPGLPAAAMGRHGGGGGDSGKIVINVGGVRH-----ETYRSTLRTL-------PGTRLAG 116 Query: 530 AGEP 541 EP Sbjct: 117 LTEP 120
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.6 bits (65), Expect = 5.7 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 19/104 (18%) Frame = +2 Query: 215 PRWKIRSPPGSSWPGKQRSTGWTRG------PGTTASCCSLEAWPSP---GAKTPSTG-- 361 P W + S PG+S G T +G P T S +L + SP A++PS G Sbjct: 446 PDWMVFSAPGASSSGTPGPTSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRH 505 Query: 362 --------LGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHAR 469 G P G RDG A +GGP G++ S R Sbjct: 506 PEDAKRQPRGRP-SSSGTPRDGPAGGTGGSGGP--GGSLGSRGR 546
>RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)| Length = 1447 Score = 29.6 bits (65), Expect = 5.7 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Frame = +2 Query: 233 SPPGSSW-PGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGA 409 S PG W P ++ S + PG+ +S PG K+PS TP ++G A Sbjct: 1255 SQPGEQWEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFCTPQSPVSLAQEGTA 1314 Query: 410 AERLLAGGPREAGAVPSHARSHLRGL-LRGE 499 EAG + + H+ L L GE Sbjct: 1315 QIWKRQSQEVEAGGIQTVEDEHVAELTLMGE 1345
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 29.6 bits (65), Expect = 5.7 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Frame = +2 Query: 191 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTP--STGL 364 PG P + SP PG+ + G G T A +PGA P S G Sbjct: 957 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG------ALGAPGAPGPPGSPGP 1010 Query: 365 GTP*KKEGRNRDGGAAERLLAGGPREAGAV--PSHARSHLRGLLRGEARRPGLR 520 P K+G + GA + GP A + P R +GEA PG R Sbjct: 1011 AGPTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGD-----KGEAGEPGER 1059
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 29.6 bits (65), Expect = 5.7 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Frame = +2 Query: 227 IRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KK--EGRNRD 400 +R P G+ G PG T S A PG + P+ LG P + G D Sbjct: 540 LRKPLSPGMTGRPGPAGPPGPPGATGSVGHPGARGPPGYRGPTGELGDPGPRGDTGEKGD 599 Query: 401 GGAAERLLAG-----GPREAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEP 541 G A + + G GP+ VP +++ G +GE PG D G P Sbjct: 600 KGPAGQGIDGPDGDQGPQGLPGVPGISKNGRDG-AQGEPGLPG----DPGTP 646
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 29.6 bits (65), Expect = 5.7 Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Frame = +2 Query: 191 PGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTP--STGL 364 PG P + SP PG+ + G G T A +PGA P S G Sbjct: 956 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG------AVGAPGAPGPPGSPGP 1009 Query: 365 GTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLR 520 P K+G + GA + GP AGA RG +GEA PG R Sbjct: 1010 AGPTGKQGDRGEAGAQGPMGPSGP--AGARGIQGPQGPRG-DKGEAGEPGER 1058
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 29.3 bits (64), Expect = 7.5 Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 11/123 (8%) Frame = +2 Query: 179 GRSSPGRMSPT*PRWKIRSP-----PGSSWPGKQRSTGWTRGP----GTTASCCSLEAWP 331 G+ PG P + P PGS P ++ GP G S + Sbjct: 420 GKGGPGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRG 479 Query: 332 SPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAG--GPREAGAVPSHARSHLRGLLRGEAR 505 PG + P LG P K+ R G A R +G GP+ P + RG GE Sbjct: 480 LPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-TPGEKG 538 Query: 506 RPG 514 PG Sbjct: 539 EPG 541
>Y1506_METJA (Q58901) Hypothetical protein MJ1506| Length = 437 Score = 29.3 bits (64), Expect = 7.5 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +3 Query: 432 VQGKLELSHLTPGVTYEVFFEVKLDDPA 515 ++GK +SHL PG + V+F++ +D+ A Sbjct: 117 IKGKATISHLNPGESDTVYFKLHVDENA 144
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 29.3 bits (64), Expect = 7.5 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Frame = +2 Query: 230 RSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPS----PGAKTPSTGLGTP*KKEGRNR 397 + PGS P ++ GP A + PG + P LG P K+ R Sbjct: 432 KGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491 Query: 398 DGGAAERLLAG--GPREAGAVPSHARSHLRGLLRGEARRPGLRVVDAG 535 G A R +G GP+ P + RG GE PG R + G Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-APGEKGEPGPRGPEGG 538
>Y1561_METJA (Q58956) Hypothetical protein MJ1561| Length = 553 Score = 29.3 bits (64), Expect = 7.5 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +3 Query: 432 VQGKLELSHLTPGVTYEVFFEVKLDDPA 515 ++GK +SHL PG + V+F++ +D+ A Sbjct: 76 IKGKATISHLNPGESDTVYFKLHVDENA 103
>SBCD_BORBU (O51769) Exonuclease sbcD homolog| Length = 413 Score = 29.3 bits (64), Expect = 7.5 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +1 Query: 166 PHMLREIVAGENVTDVAALEDQVTAGIFLAGKTKKY 273 PH+ ++ G+N ++ LEDQ ++ +FL Y Sbjct: 135 PHINERLILGQNFDNIFGLEDQYSSKLFLENLENAY 170
>DAMX_ECOLI (P11557) Protein damX| Length = 428 Score = 29.3 bits (64), Expect = 7.5 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +2 Query: 188 SPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKT 349 +P R P P ++P +S P + + T P TAS A P+ GAKT Sbjct: 282 TPKRTEPAAPVASTKAPAATSTPAPKETA--TTAPVQTASPAQTTATPAAGAKT 333
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 28.9 bits (63), Expect = 9.7 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 11/105 (10%) Frame = +2 Query: 230 RSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPG------AKTPSTGLGTP*KKEGR 391 R P PG +R++ T L+ PSPG A + G +P Sbjct: 697 RRPEAEGAPGPERASPGPTAAQPTQLVLKLKERPSPGTGASARAARAAGGAASP------ 750 Query: 392 NRDGGAAERLL--AGGPREAGAVPSHARS---HLRGLLRGEARRP 511 GG A R GGP + P+ AR H++ R EA P Sbjct: 751 -GPGGGARRAAPGTGGPTPGRSPPAPARQSVIHVQAAARDEACAP 794
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 9.7 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 9/110 (8%) Frame = +2 Query: 182 RSSPGRMSPT*PRWKIRSPPGSSWPGKQRSTGWTRGPGTTASC-----CSLEAWPS---- 334 R SPG + P + P + PG + TG PG + P Sbjct: 500 RGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGP 559 Query: 335 PGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRG 484 PGA+ + +G P K G ER G P GA + +G Sbjct: 560 PGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGAAGKDGEAGAQG 609 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,551,648 Number of Sequences: 219361 Number of extensions: 1494767 Number of successful extensions: 4861 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 4519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4847 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
