ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7j14 |
|---|---|
| Clone Library Name | barley_pub |
>SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1| Length = 785 Score = 130 bits (327), Expect = 3e-30 Identities = 88/177 (49%), Positives = 96/177 (54%), Gaps = 39/177 (22%) Frame = +3 Query: 3 LAPDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGWT 182 LA DDEI++NI+GLAR RPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGH+GSIG T Sbjct: 455 LAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRT 514 Query: 183 ATQAMS--IGGEEQGDXXXXXXXXXXXXXXXXXXX-------------XLSLVNVPRFTP 317 A QA+S GEEQGD L+L N+PR P Sbjct: 515 ANQALSQNANGEEQGDGVYGDPNSFPGPAALPPPRPGVPIVRPLPPPPNLAL-NLPRPPP 573 Query: 318 N------------PM--PYHVQ-------PPHH---MQGVPPHMMSNMHPPLPPGQQ 416 + PM P H Q PP H M PP M MH P PPG Q Sbjct: 574 SAQYPGAPRPLGVPMMQPMHQQHQLTMPGPPGHPQMMMNRPPQMQPGMHVPPPPGSQ 630 Score = 27.7 bits (60), Expect(2) = 2.4 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +3 Query: 321 PMPYHVQPPHHMQGVPPHMMSNMHPPLPP 407 P PY PP M + P M M PP PP Sbjct: 638 PRPYGQLPPSAMGMMQPPPMPGMAPPPPP 666 Score = 21.9 bits (45), Expect(2) = 2.4 Identities = 12/40 (30%), Positives = 16/40 (40%) Frame = +1 Query: 226 LQVQLHFPGLACRYPGLPNHFPWSMFPDLHPIQCLIMSNP 345 L + L P + +YPG P M +H L M P Sbjct: 564 LALNLPRPPPSAQYPGAPRPLGVPMMQPMHQQHQLTMPGP 603
>SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120)| Length = 791 Score = 43.5 bits (101), Expect = 5e-04 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 1/142 (0%) Frame = +3 Query: 6 APDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGWTA 185 AP +I ++ LA R DIFG E + + E +K +E+ V WDGHSGS+ T Sbjct: 455 APGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEK---VTWDGHSGSMARTQ 511 Query: 186 TQAM-SIGGEEQGDXXXXXXXXXXXXXXXXXXXXLSLVNVPRFTPNPMPYHVQPPHHMQG 362 A +I +EQ + + PN +P PP Sbjct: 512 QAAQANITLQEQIEAIHKAKGLVPEDDTKE--------KIGPSKPNEIPQQPPPPSSATN 563 Query: 363 VPPHMMSNMHPPLPPGQQHMIR 428 +P P PP +R Sbjct: 564 IPSSAPPITSVPRPPAMPPPVR 585
>SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-associated| protein 114) (SAP 114) (SF3a120) Length = 793 Score = 43.1 bits (100), Expect = 6e-04 Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 4/138 (2%) Frame = +3 Query: 6 APDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGWTA 185 AP +I ++ LA R DIFG E + + E +K +E+ V WDGHSGS+ T Sbjct: 457 APGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEK---VTWDGHSGSMARTQ 513 Query: 186 TQAM-SIGGEEQGDXXXXXXXXXXXXXXXXXXXXLSLVNVPRFTPNPMPYHVQPPHHMQG 362 A +I +EQ + + PN +P PP Sbjct: 514 QAAQANITLQEQIEAIHKAKGLVPEDDTKE--------KIGPSKPNEIPQQPPPPSSATN 565 Query: 363 VP---PHMMSNMHPPLPP 407 +P P + S PP P Sbjct: 566 IPSSAPPITSVPRPPTMP 583
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 34.3 bits (77), Expect = 0.27 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +3 Query: 303 PRFTPNPMPYHVQP-PHH-----MQGVPPHMMSNMHPPLPPGQQHMI 425 P P+P P+H Q PHH + P H ++ HPPL G Q + Sbjct: 142 PAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQV 188
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 34.3 bits (77), Expect = 0.27 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +3 Query: 303 PRFTPNPMPYHVQP-PHH-----MQGVPPHMMSNMHPPLPPGQQHMI 425 P P+P P+H Q PHH + P H ++ HPPL G Q + Sbjct: 297 PAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQV 343
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 33.9 bits (76), Expect = 0.36 Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%) Frame = +2 Query: 188 PGNVYXXXXXXXXXXXXXXXPAWHAVTPASPTTFLGQCSPIYTQSNALSCPTPSSYARSS 367 PG VY P + +P SP SP Y+ ++ PT SY+ +S Sbjct: 1572 PG-VYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTS 1630 Query: 368 TAY---DVQYASTSATRSTAHD*DVRSHGSYAK*YPS-TASRP*YSVHS--WSTTVP-YA 526 +Y Y+ TS + S S SY+ PS + S P YS S +S T P Y+ Sbjct: 1631 PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYS 1690 Query: 527 P-SPAHA 544 P SP ++ Sbjct: 1691 PTSPTYS 1697
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 33.1 bits (74), Expect = 0.61 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 303 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 419 P+ P P P+ PPH G+P H + H P P QQH Sbjct: 373 PQMHPQPSPH---PPHRPHGLPQHPQRSPH-PAPHPQQH 407
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +2 Query: 269 PASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTA 373 PA+P L CSP Q+++LS P+P+S SS++ Sbjct: 747 PAAPIPILSPCSPPSPQASSLSGPSPASSRLSSSS 781
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 27.7 bits (60), Expect(2) = 1.0 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = +3 Query: 315 PNPMPYHVQPPHHMQGVPPHM--MSNMHPPLPP 407 P P +H P HH PP + HPP PP Sbjct: 992 PLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPP 1024 Score = 23.1 bits (48), Expect(2) = 1.0 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Frame = +2 Query: 419 HD*DVRSHGSYAK*YPSTASRP*YSVHSWS----TTVPYAPSPAHAEHANHGQPHRNPPA 586 H ++ + GS P A P S+ W + P APSP+H A G PA Sbjct: 1022 HPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPA 1081
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 27.3 bits (59), Expect(2) = 1.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 506 STTVPYAPSPAHAEHANHGQPHRNPPA 586 S VP P+P H A H QP PP+ Sbjct: 224 SPQVPTHPTPDHTRMAQHHQPPPPPPS 250 Score = 23.5 bits (49), Expect(2) = 1.1 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = +3 Query: 315 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPP 407 P P P QPP Q P N PP PP Sbjct: 155 PPPPPPSQQPPFQQQYQGPQGPGNF-PPQPP 184
>ROBO4_MOUSE (Q8C310) Roundabout homolog 4 precursor| Length = 1012 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +2 Query: 269 PASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTA 373 PA+P + L P Q++ LSCP+PSS SS++ Sbjct: 754 PAAPLSVLNSSRPSSPQASFLSCPSPSSSNLSSSS 788
>GLI3_MOUSE (Q61602) Zinc finger protein GLI3| Length = 1596 Score = 32.0 bits (71), Expect = 1.4 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 8/146 (5%) Frame = +3 Query: 6 APDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGWTA 185 A + + + N IG TR D+ AV + +DE P Q+ +I Sbjct: 10 ATERKKAENSIGKCPTRTDVS-------EKAVASSTTSNEDESPGQIYHRERRNAI---T 59 Query: 186 TQAMSIGG----EEQGDXXXXXXXXXXXXXXXXXXXXLSLVNVPR----FTPNPMPYHVQ 341 Q S+ G E+ L+ ++P F +P +++ Sbjct: 60 MQPQSVQGLNKISEEPSTSSDERASLIKKEIHGSLPHLAEPSLPYRGTVFAMDPRNGYME 119 Query: 342 PPHHMQGVPPHMMSNMHPPLPPGQQH 419 P +H PPH+ HPP+P +H Sbjct: 120 PHYH----PPHLFPAFHPPVPIDARH 141
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (Fragment) Length = 902 Score = 31.6 bits (70), Expect = 1.8 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Frame = +2 Query: 248 PAWHAVTPA-SPTT-FLGQCSPIYTQSNALSCPTPSSYARSSTAY---DVQYASTSATRS 412 P++ +P+ SPT+ F SP Y+ ++ PT SY+ +S +Y Y+ TS + S Sbjct: 761 PSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 820 Query: 413 TAHD*DVRSHGSYAK*YPS-TASRP*YS--VHSWSTTVP-YAPS 532 + SY+ PS + + P YS S+S T P Y+PS Sbjct: 821 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 864
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 31.2 bits (69), Expect = 2.3 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%) Frame = +2 Query: 326 ALSCPTPSSYARSSTAYDVQYASTSATRSTAHD*DVRSHGSYAK*YPSTAS--------- 478 ++S P P + +++ A+ +AT + ++ GSY + YP+ +S Sbjct: 190 SVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSSSYFGGVDCS 249 Query: 479 ---RP*YSVHSWSTTVPYAPSPAHAEHANHGQPHRNPP 583 P +S H P APS H +H PH + P Sbjct: 250 SYLAPMHSHHHPHQLSPMAPSSMAGHHHHH--PHAHHP 285
>OTX1_MOUSE (P80205) Homeobox protein OTX1| Length = 355 Score = 31.2 bits (69), Expect = 2.3 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%) Frame = +2 Query: 326 ALSCPTPSSYARSSTAYDVQYASTSATRSTAHD*DVRSHGSYAK*YPSTAS--------- 478 ++S P P + +++ A+ +AT + ++ GSY + YP+ +S Sbjct: 190 SVSVPEPLAAPSNASCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPAPSSSYFGGVDCS 249 Query: 479 ---RP*YSVHSWSTTVPYAPSPAHAEHANHGQPHRNPP 583 P +S H P APS H +H PH + P Sbjct: 250 SYLAPMHSHHHPHQLSPMAPSSMAGHHHHH--PHAHHP 285
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 8/46 (17%) Frame = +3 Query: 303 PRFTPNPMPYHVQPPHHM---QGVPPHMM-----SNMHPPLPPGQQ 416 PR TP+P H P HH G PP + + MHP PG Q Sbjct: 660 PRRTPSPSSEHRSPHHHRHSHMGYPPVVQPIQPAALMHPQSSPGSQ 705
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +3 Query: 300 VPRFTPNPMPYHVQPPHH--MQGVPPHMMSNMHPPLPPGQQ 416 +P F+ P Y QP +Q +PP +M ++ PP P QQ Sbjct: 963 LPEFSNRPPGYPSQPVEQRPLQQMPPQLMQHVAPPPQPPQQ 1003
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Frame = +3 Query: 288 SLVNVPRFTPNPMPYHVQPPHHM----QGVPPHMMSNMHPPLPPGQ 413 SL P F P P P PP H GVPP S P PPGQ Sbjct: 550 SLPATPVFVPVPPPPLYPPPPHTLPLPPGVPPPQFS---PQFPPGQ 592
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 30.8 bits (68), Expect = 3.0 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Frame = +2 Query: 248 PAWHAVTPASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTAYDVQYASTSATRSTAHD* 427 P + +P SP+ SP Y+ ++ PT SY+ +S AY S S T S ++ Sbjct: 1621 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPT-SPSYSP 1677 Query: 428 DVRSHGSYAK*YPSTASRP*YSVHSWSTTVP-YAP-SPAHAEHANHGQPHRN 577 S+ + Y T+ + S+S T P Y+P SPA++ + + + N Sbjct: 1678 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNEN 1729
>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)| Length = 563 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = +2 Query: 269 PASPTTFLGQ----CSPIYTQSNALSCPTPSSYARSSTAYDVQYASTSATRSTAHD 424 P SPTT + SP+Y +A+S S+Y SST Y ++ S ++T D Sbjct: 412 PPSPTTQPAEPKTPSSPVY--QDAVSYDAESAYKNSSTTYSAEHEPESGYKTTGSD 465
>PRD_DROME (P06601) Segmentation protein paired| Length = 613 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +2 Query: 392 STSATRSTAHD*DVRSHGSYAK*YPSTASRP*YSVHSWSTTVPYA--PSPAHAEHANHGQ 565 S ++T ST+ DV +H + H + T YA P+P HA H++HG Sbjct: 509 SLNSTSSTSQALDVTAHQMF---------------HPYQHTPQYASYPAPGHA-HSHHGH 552 Query: 566 PHRNPP 583 PH P Sbjct: 553 PHAPHP 558
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Frame = +3 Query: 288 SLVNVPRFTPNPMPYHVQPPHHM----QGVPPHMMSNMHPPLPPGQ 413 SL P F P P P PP H GVPP S P PPGQ Sbjct: 549 SLPATPVFVPVPPPPLYPPPPHTLPLPPGVPPPQFS---PQFPPGQ 591
>NCOA6_RAT (Q9JLI4) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPA Length = 418 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +3 Query: 300 VPRFTPNPMPYHVQPPHH--MQGVPPHMMSNMHPPLPPGQQ 416 +P F+ P Y QP +Q +PP +M ++ PP P QQ Sbjct: 250 LPDFSNRPPGYPTQPVEQRPLQQMPPQLMQHVAPPPQPPQQ 290
>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)| Length = 1002 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +3 Query: 321 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 419 P P H +P HM P H H P PP + H Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHH 345
>NF1_RAT (P97526) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2820 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 475 LQAIILSSFLVHHGSLCPLPRTCRTCQPWSTPSES 579 ++ + + ++ +HHG P RT + QPWS+P S Sbjct: 2449 MENVPMDTYPIHHGD--PSSRTLKETQPWSSPRGS 2481
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = +3 Query: 315 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSG 437 P P QPP H Q PPH + PP PP + + G Sbjct: 71 PPQQPPPQQPPPHQQP-PPHQPPHQQPPPPPQESKPVVPQG 110
>PALI_YARLI (Q7Z8R5) pH-response regulator protein palI/RIM9| Length = 728 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = +3 Query: 306 RFTPNPMPYHV----QPPHHMQGVPPHMMSNMHPPLPPGQ 413 R+ P+P Y +PP+ +GVPP SN P PPGQ Sbjct: 294 RYGPSPDRYDQGGPGRPPNGSRGVPPRRPSN--GPTPPGQ 331
>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3| Length = 1580 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 309 FTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 419 F +P +++P +H PPH+ HPP+P +H Sbjct: 109 FAMDPRNGYMEPHYH----PPHLFPAFHPPVPIDARH 141
>GLI3_HUMAN (P10071) Zinc finger protein GLI3| Length = 1580 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 309 FTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 419 F +P +++P +H PPH+ HPP+P +H Sbjct: 109 FAMDPRNGYMEPHYH----PPHLFPAFHPPVPIDARH 141
>NF1_HUMAN (P21359) Neurofibromin (Neurofibromatosis-related protein NF-1)| [Contains: Neurofibromin truncated] Length = 2839 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 475 LQAIILSSFLVHHGSLCPLPRTCRTCQPWSTPSES 579 ++ + + ++ +HHG P RT + QPWS+P S Sbjct: 2468 MENVPMDTYPIHHGD--PSYRTLKETQPWSSPKGS 2500
>NF1_MOUSE (Q04690) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2841 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 475 LQAIILSSFLVHHGSLCPLPRTCRTCQPWSTPSES 579 ++ + + ++ +HHG P RT + QPWS+P S Sbjct: 2470 MENVPMDTYPIHHGD--PSYRTLKETQPWSSPKGS 2502
>BRO1_YARLI (Q6CGJ5) Vacuolar protein-sorting protein BRO1 (BRO| domain-containing protein 1) Length = 867 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 309 FTPNPMPYHVQPPHHMQ-GVPP-HMMSNMHPPLPP 407 + PN P+ QPP H Q G PP H +PP PP Sbjct: 821 YGPNS-PFMQQPPQHQQYGQPPHHQQYGQNPPPPP 854
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 342 PPHHMQGVPPHMMSNMHPPL-PPGQQHMIR 428 PPHHM PPH +NM PP P Q M++ Sbjct: 809 PPHHMG--PPHGPTNMGPPTSTPPQSQMLQ 836
>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6| Length = 1189 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +3 Query: 297 NVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMI 425 N+ + +P+ + P HH PP + PPLPPG ++ Sbjct: 484 NMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIV 526
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 303 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 419 P+ P P P+ PH G+P H H P P QQH Sbjct: 374 PQMHPQPSPH---TPHRPHGLPQHPQRPQH-PAPHPQQH 408
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 29.6 bits (65), Expect = 6.7 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 248 PAWHAVTPASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTAY---DVQYASTSATRSTA 418 P + +P SP+ SP Y+ ++ PT SY+ +S +Y Y+ TS + S Sbjct: 1624 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1681 Query: 419 HD*DVRSHGSYAK*YPS-TASRP*YS--VHSWSTTVP-YAP-SPAHAEHANH 559 + SY+ PS + + P YS S+S T P Y+P SP+++ N+ Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSYSPSFNN 1733
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 315 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLP 404 P P P +P H + VPP N PP+P Sbjct: 253 PPPPPVGNRPSMHREAVPPPPSQNSKPPVP 282
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 29.3 bits (64), Expect = 8.8 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 321 PMPYHVQPPHHMQGVPPHM-MSNMHPP--LPPGQ 413 PMP + HHM G PP+M M PP L PGQ Sbjct: 150 PMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQ 183
>GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa zein)| (Alcohol-soluble reduced glutelin) (ASG) (Zein ZC2) Length = 223 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +3 Query: 294 VNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 419 V++P P P HV PP H+ P H + P P Q H Sbjct: 58 VHLPPPVHLPPPVHVPPPVHLPPPPCHYPTQPPRPQPHPQPH 99
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 29.3 bits (64), Expect = 8.8 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Frame = +2 Query: 248 PAWHAVTPASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTAY---DVQYASTSATRSTA 418 PA H +P SP+ Y+ ++ PT SY+ +S +Y Y+ TS + S Sbjct: 1604 PAHHGQSPVSPS---------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1654 Query: 419 HD*DVRSHGSYAK*YPS-TASRP*YSVHS--WSTTVP-YAP-SPAHA 544 + SY+ PS + S P YS S +S T P Y+P SP ++ Sbjct: 1655 SPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYS 1701
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 315 PNPMPYHVQPPHHMQGVPPHMM 380 PN M + P HH G PPHMM Sbjct: 580 PNMMNHPHHPHHHPGGPPPHMM 601
>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) (Fragment) Length = 526 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +3 Query: 303 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPL-PPGQQH 419 PR P+ P H PPH G PPH HPP PP H Sbjct: 360 PRHPPHGPPPHGHPPH---GPPPH----GHPPHGPPPHGH 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,749,045 Number of Sequences: 219361 Number of extensions: 2077027 Number of successful extensions: 7934 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 6755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7719 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
