ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7j07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480927.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2202 Score = 274 bits (138), Expect = 3e-70 Identities = 393/478 (82%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaagactgattcggttgccggagagcgtgtatgctcgtctga 60 |||| ||||||||| | |||||||| || ||||| |||||||| |||||||| | ||||| Sbjct: 1323 agtcaatcttcaagaactcaagactaatccggttaccggagagtgtgtatgcgcttctga 1382 Query: 61 aaaaggtggggaaagcaaggctggagtgcatcttggaaggggagcagcctactaaccaaa 120 ||||||||| || |||||| |||| |||||| ||||||||||||| || || ||| | Sbjct: 1383 gaaaggtgggcaaggcaaggatggaatgcatcatggaaggggagcaacccaccaacgcga 1442 Query: 121 atgtagctaggcgtgcgggcatctcgatcgagaagctggcgaaactcaaagcgaagacca 180 | ||||| ||||| || |||||| | ||||||||||| ||||| ||| |||||| ||| Sbjct: 1443 acgtagcgaggcgcgccggcatcaccatcgagaagcttgcgaagctccgagcgaaaaccc 1502 Query: 181 gaaagccacgatcaatgcaggatcaagtttggtccaacgacgcagtcaccttccaggaga 240 | || || || || ||||||||||| || ||||| | || | |||||||||||||||| Sbjct: 1503 ggaaaccccggtcgatgcaggatcatgtctggtcagatgagggtgtcaccttccaggaga 1562 Query: 241 tcacggaggacccgaacatcgattcgccggacctcgtcgtggacaggatcatgatgaggc 300 |||| || ||||| || | || | || ||||| ||||||||||| |||||||||| Sbjct: 1563 tcacagaagacccaaatgtggagccacctgacctgagtgtggacaggatgatgatgaggc 1622 Query: 301 agcaggtgcgggagttcctgggcatcctgagcacgagggagaaggagatcgtcgagcacc 360 |||||||| |||| |||||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct: 1623 agcaggtgagggacttcctggggatcctgagccccagggagaaggagatcatcgagcacc 1682 Query: 361 ggttcgggatctacgacggcgagcccaagacgctccatgtgatcggcgacatgtacggct 420 ||||||||||| |||| |||||||| |||||||| ||||| ||||| ||||||| || Sbjct: 1683 ggttcgggatccacgatggcgagccgaagacgctacatgtcatcggggacatgtttgggc 1742 Query: 421 tgtccaaggagcggatccggcagctccagaaccgggccttggacaagctgaagcggag 478 ||||||||||| ||||| ||||||| ||||||||||| |||| ||||| ||| |||| Sbjct: 1743 tgtccaaggagaggatcaggcagctgcagaaccgggcgctggagaagctcaagaggag 1800
>ref|XM_507175.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0087F21.45 mRNA Length = 2257 Score = 274 bits (138), Expect = 3e-70 Identities = 393/478 (82%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaagactgattcggttgccggagagcgtgtatgctcgtctga 60 |||| ||||||||| | |||||||| || ||||| |||||||| |||||||| | ||||| Sbjct: 1371 agtcaatcttcaagaactcaagactaatccggttaccggagagtgtgtatgcgcttctga 1430 Query: 61 aaaaggtggggaaagcaaggctggagtgcatcttggaaggggagcagcctactaaccaaa 120 ||||||||| || |||||| |||| |||||| ||||||||||||| || || ||| | Sbjct: 1431 gaaaggtgggcaaggcaaggatggaatgcatcatggaaggggagcaacccaccaacgcga 1490 Query: 121 atgtagctaggcgtgcgggcatctcgatcgagaagctggcgaaactcaaagcgaagacca 180 | ||||| ||||| || |||||| | ||||||||||| ||||| ||| |||||| ||| Sbjct: 1491 acgtagcgaggcgcgccggcatcaccatcgagaagcttgcgaagctccgagcgaaaaccc 1550 Query: 181 gaaagccacgatcaatgcaggatcaagtttggtccaacgacgcagtcaccttccaggaga 240 | || || || || ||||||||||| || ||||| | || | |||||||||||||||| Sbjct: 1551 ggaaaccccggtcgatgcaggatcatgtctggtcagatgagggtgtcaccttccaggaga 1610 Query: 241 tcacggaggacccgaacatcgattcgccggacctcgtcgtggacaggatcatgatgaggc 300 |||| || ||||| || | || | || ||||| ||||||||||| |||||||||| Sbjct: 1611 tcacagaagacccaaatgtggagccacctgacctgagtgtggacaggatgatgatgaggc 1670 Query: 301 agcaggtgcgggagttcctgggcatcctgagcacgagggagaaggagatcgtcgagcacc 360 |||||||| |||| |||||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct: 1671 agcaggtgagggacttcctggggatcctgagccccagggagaaggagatcatcgagcacc 1730 Query: 361 ggttcgggatctacgacggcgagcccaagacgctccatgtgatcggcgacatgtacggct 420 ||||||||||| |||| |||||||| |||||||| ||||| ||||| ||||||| || Sbjct: 1731 ggttcgggatccacgatggcgagccgaagacgctacatgtcatcggggacatgtttgggc 1790 Query: 421 tgtccaaggagcggatccggcagctccagaaccgggccttggacaagctgaagcggag 478 ||||||||||| ||||| ||||||| ||||||||||| |||| ||||| ||| |||| Sbjct: 1791 tgtccaaggagaggatcaggcagctgcagaaccgggcgctggagaagctcaagaggag 1848
>dbj|AK099922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M03, full insert sequence Length = 2203 Score = 274 bits (138), Expect = 3e-70 Identities = 393/478 (82%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaagactgattcggttgccggagagcgtgtatgctcgtctga 60 |||| ||||||||| | |||||||| || ||||| |||||||| |||||||| | ||||| Sbjct: 1324 agtcaatcttcaagaactcaagactaatccggttaccggagagtgtgtatgcgcttctga 1383 Query: 61 aaaaggtggggaaagcaaggctggagtgcatcttggaaggggagcagcctactaaccaaa 120 ||||||||| || |||||| |||| |||||| ||||||||||||| || || ||| | Sbjct: 1384 gaaaggtgggcaaggcaaggatggaatgcatcatggaaggggagcaacccaccaacgcga 1443 Query: 121 atgtagctaggcgtgcgggcatctcgatcgagaagctggcgaaactcaaagcgaagacca 180 | ||||| ||||| || |||||| | ||||||||||| ||||| ||| |||||| ||| Sbjct: 1444 acgtagcgaggcgcgccggcatcaccatcgagaagcttgcgaagctccgagcgaaaaccc 1503 Query: 181 gaaagccacgatcaatgcaggatcaagtttggtccaacgacgcagtcaccttccaggaga 240 | || || || || ||||||||||| || ||||| | || | |||||||||||||||| Sbjct: 1504 ggaaaccccggtcgatgcaggatcatgtctggtcagatgagggtgtcaccttccaggaga 1563 Query: 241 tcacggaggacccgaacatcgattcgccggacctcgtcgtggacaggatcatgatgaggc 300 |||| || ||||| || | || | || ||||| ||||||||||| |||||||||| Sbjct: 1564 tcacagaagacccaaatgtggagccacctgacctgagtgtggacaggatgatgatgaggc 1623 Query: 301 agcaggtgcgggagttcctgggcatcctgagcacgagggagaaggagatcgtcgagcacc 360 |||||||| |||| |||||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct: 1624 agcaggtgagggacttcctggggatcctgagccccagggagaaggagatcatcgagcacc 1683 Query: 361 ggttcgggatctacgacggcgagcccaagacgctccatgtgatcggcgacatgtacggct 420 ||||||||||| |||| |||||||| |||||||| ||||| ||||| ||||||| || Sbjct: 1684 ggttcgggatccacgatggcgagccgaagacgctacatgtcatcggggacatgtttgggc 1743 Query: 421 tgtccaaggagcggatccggcagctccagaaccgggccttggacaagctgaagcggag 478 ||||||||||| ||||| ||||||| ||||||||||| |||| ||||| ||| |||| Sbjct: 1744 tgtccaaggagaggatcaggcagctgcagaaccgggcgctggagaagctcaagaggag 1801
>dbj|AK068874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170C15, full insert sequence Length = 2258 Score = 274 bits (138), Expect = 3e-70 Identities = 393/478 (82%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaagactgattcggttgccggagagcgtgtatgctcgtctga 60 |||| ||||||||| | |||||||| || ||||| |||||||| |||||||| | ||||| Sbjct: 1372 agtcaatcttcaagaactcaagactaatccggttaccggagagtgtgtatgcgcttctga 1431 Query: 61 aaaaggtggggaaagcaaggctggagtgcatcttggaaggggagcagcctactaaccaaa 120 ||||||||| || |||||| |||| |||||| ||||||||||||| || || ||| | Sbjct: 1432 gaaaggtgggcaaggcaaggatggaatgcatcatggaaggggagcaacccaccaacgcga 1491 Query: 121 atgtagctaggcgtgcgggcatctcgatcgagaagctggcgaaactcaaagcgaagacca 180 | ||||| ||||| || |||||| | ||||||||||| ||||| ||| |||||| ||| Sbjct: 1492 acgtagcgaggcgcgccggcatcaccatcgagaagcttgcgaagctccgagcgaaaaccc 1551 Query: 181 gaaagccacgatcaatgcaggatcaagtttggtccaacgacgcagtcaccttccaggaga 240 | || || || || ||||||||||| || ||||| | || | |||||||||||||||| Sbjct: 1552 ggaaaccccggtcgatgcaggatcatgtctggtcagatgagggtgtcaccttccaggaga 1611 Query: 241 tcacggaggacccgaacatcgattcgccggacctcgtcgtggacaggatcatgatgaggc 300 |||| || ||||| || | || | || ||||| ||||||||||| |||||||||| Sbjct: 1612 tcacagaagacccaaatgtggagccacctgacctgagtgtggacaggatgatgatgaggc 1671 Query: 301 agcaggtgcgggagttcctgggcatcctgagcacgagggagaaggagatcgtcgagcacc 360 |||||||| |||| |||||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct: 1672 agcaggtgagggacttcctggggatcctgagccccagggagaaggagatcatcgagcacc 1731 Query: 361 ggttcgggatctacgacggcgagcccaagacgctccatgtgatcggcgacatgtacggct 420 ||||||||||| |||| |||||||| |||||||| ||||| ||||| ||||||| || Sbjct: 1732 ggttcgggatccacgatggcgagccgaagacgctacatgtcatcggggacatgtttgggc 1791 Query: 421 tgtccaaggagcggatccggcagctccagaaccgggccttggacaagctgaagcggag 478 ||||||||||| ||||| ||||||| ||||||||||| |||| ||||| ||| |||| Sbjct: 1792 tgtccaaggagaggatcaggcagctgcagaaccgggcgctggagaagctcaagaggag 1849
>dbj|AB096012.1| Oryza sativa (japonica cultivar-group) SIG6 mRNA for Sig6, complete cds Length = 1720 Score = 274 bits (138), Expect = 3e-70 Identities = 393/478 (82%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaagactgattcggttgccggagagcgtgtatgctcgtctga 60 |||| ||||||||| | |||||||| || ||||| |||||||| |||||||| | ||||| Sbjct: 1196 agtcaatcttcaagaactcaagactaatccggttaccggagagtgtgtatgcgcttctga 1255 Query: 61 aaaaggtggggaaagcaaggctggagtgcatcttggaaggggagcagcctactaaccaaa 120 ||||||||| || |||||| |||| |||||| ||||||||||||| || || ||| | Sbjct: 1256 gaaaggtgggcaaggcaaggatggaatgcatcatggaaggggagcaacccaccaacgcga 1315 Query: 121 atgtagctaggcgtgcgggcatctcgatcgagaagctggcgaaactcaaagcgaagacca 180 | ||||| ||||| || |||||| | ||||||||||| ||||| ||| |||||| ||| Sbjct: 1316 acgtagcgaggcgcgccggcatcaccatcgagaagcttgcgaagctccgagcgaaaaccc 1375 Query: 181 gaaagccacgatcaatgcaggatcaagtttggtccaacgacgcagtcaccttccaggaga 240 | || || || || ||||||||||| || ||||| | || | |||||||||||||||| Sbjct: 1376 ggaaaccccggtcgatgcaggatcatgtctggtcagatgagggtgtcaccttccaggaga 1435 Query: 241 tcacggaggacccgaacatcgattcgccggacctcgtcgtggacaggatcatgatgaggc 300 |||| || ||||| || | || | || ||||| ||||||||||| |||||||||| Sbjct: 1436 tcacagaagacccaaatgtggagccacctgacctgagtgtggacaggatgatgatgaggc 1495 Query: 301 agcaggtgcgggagttcctgggcatcctgagcacgagggagaaggagatcgtcgagcacc 360 |||||||| |||| |||||||| ||||||||| | ||||||||||||||| ||||||||| Sbjct: 1496 agcaggtgagggacttcctggggatcctgagccccagggagaaggagatcatcgagcacc 1555 Query: 361 ggttcgggatctacgacggcgagcccaagacgctccatgtgatcggcgacatgtacggct 420 ||||||||||| |||| |||||||| |||||||| ||||| ||||| ||||||| || Sbjct: 1556 ggttcgggatccacgatggcgagccgaagacgctacatgtcatcggggacatgtttgggc 1615 Query: 421 tgtccaaggagcggatccggcagctccagaaccgggccttggacaagctgaagcggag 478 ||||||||||| ||||| ||||||| ||||||||||| |||| ||||| ||| |||| Sbjct: 1616 tgtccaaggagaggatcaggcagctgcagaaccgggcgctggagaagctcaagaggag 1673
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 198 bits (100), Expect = 1e-47 Identities = 175/200 (87%) Strand = Plus / Plus Query: 279 gtggacaggatcatgatgaggcagcaggtgcgggagttcctgggcatcctgagcacgagg 338 ||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| | ||| Sbjct: 8674509 gtggacaggatgatgatgaggcagcaggtgagggacttcctggggatcctgagccccagg 8674568 Query: 339 gagaaggagatcgtcgagcaccggttcgggatctacgacggcgagcccaagacgctccat 398 |||||||||||| |||||||||||||||||||| |||| |||||||| |||||||| ||| Sbjct: 8674569 gagaaggagatcatcgagcaccggttcgggatccacgatggcgagccgaagacgctacat 8674628 Query: 399 gtgatcggcgacatgtacggcttgtccaaggagcggatccggcagctccagaaccgggcc 458 || ||||| ||||||| || ||||||||||| ||||| ||||||| ||||||||||| Sbjct: 8674629 gtcatcggggacatgtttgggctgtccaaggagaggatcaggcagctgcagaaccgggcg 8674688 Query: 459 ttggacaagctgaagcggag 478 |||| ||||| ||| |||| Sbjct: 8674689 ctggagaagctcaagaggag 8674708 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Plus Query: 33 ttgccggagagcgtgtatgctcgtctgaaaaaggtggggaaagcaaggctggagtgcatc 92 |||| |||||| |||||||| | ||||| ||||||||| || |||||| |||| |||||| Sbjct: 8673799 ttgcaggagagtgtgtatgcgcttctgagaaaggtgggcaaggcaaggatggaatgcatc 8673858 Query: 93 ttggaaggggagcagcctactaaccaaaatgtagctaggcgtgcgggcatctcgatcgag 152 ||||||||||||| || || ||| || ||||| ||||| || |||||| | |||||| Sbjct: 8673859 atggaaggggagcaacccaccaacgcgaacgtagcgaggcgcgccggcatcaccatcgag 8673918 Query: 153 aagctggcgaaactcaaagcgaagaccagaaagccacgatcaatgcaggatcaagtttgg 212 ||||| ||||| ||| |||||| ||| | || || || || ||||||||||| || ||| Sbjct: 8673919 aagcttgcgaagctccgagcgaaaacccggaaaccccggtcgatgcaggatcatgtctgg 8673978 Query: 213 tc 214 || Sbjct: 8673979 tc 8673980
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 198 bits (100), Expect = 1e-47 Identities = 175/200 (87%) Strand = Plus / Plus Query: 279 gtggacaggatcatgatgaggcagcaggtgcgggagttcctgggcatcctgagcacgagg 338 ||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| | ||| Sbjct: 186420 gtggacaggatgatgatgaggcagcaggtgagggacttcctggggatcctgagccccagg 186479 Query: 339 gagaaggagatcgtcgagcaccggttcgggatctacgacggcgagcccaagacgctccat 398 |||||||||||| |||||||||||||||||||| |||| |||||||| |||||||| ||| Sbjct: 186480 gagaaggagatcatcgagcaccggttcgggatccacgatggcgagccgaagacgctacat 186539 Query: 399 gtgatcggcgacatgtacggcttgtccaaggagcggatccggcagctccagaaccgggcc 458 || ||||| ||||||| || ||||||||||| ||||| ||||||| ||||||||||| Sbjct: 186540 gtcatcggggacatgtttgggctgtccaaggagaggatcaggcagctgcagaaccgggcg 186599 Query: 459 ttggacaagctgaagcggag 478 |||| ||||| ||| |||| Sbjct: 186600 ctggagaagctcaagaggag 186619 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Plus Query: 33 ttgccggagagcgtgtatgctcgtctgaaaaaggtggggaaagcaaggctggagtgcatc 92 |||| |||||| |||||||| | ||||| ||||||||| || |||||| |||| |||||| Sbjct: 185710 ttgcaggagagtgtgtatgcgcttctgagaaaggtgggcaaggcaaggatggaatgcatc 185769 Query: 93 ttggaaggggagcagcctactaaccaaaatgtagctaggcgtgcgggcatctcgatcgag 152 ||||||||||||| || || ||| || ||||| ||||| || |||||| | |||||| Sbjct: 185770 atggaaggggagcaacccaccaacgcgaacgtagcgaggcgcgccggcatcaccatcgag 185829 Query: 153 aagctggcgaaactcaaagcgaagaccagaaagccacgatcaatgcaggatcaagtttgg 212 ||||| ||||| ||| |||||| ||| | || || || || ||||||||||| || ||| Sbjct: 185830 aagcttgcgaagctccgagcgaaaacccggaaaccccggtcgatgcaggatcatgtctgg 185889 Query: 213 tc 214 || Sbjct: 185890 tc 185891
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 198 bits (100), Expect = 1e-47 Identities = 175/200 (87%) Strand = Plus / Plus Query: 279 gtggacaggatcatgatgaggcagcaggtgcgggagttcctgggcatcctgagcacgagg 338 ||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| | ||| Sbjct: 17488 gtggacaggatgatgatgaggcagcaggtgagggacttcctggggatcctgagccccagg 17547 Query: 339 gagaaggagatcgtcgagcaccggttcgggatctacgacggcgagcccaagacgctccat 398 |||||||||||| |||||||||||||||||||| |||| |||||||| |||||||| ||| Sbjct: 17548 gagaaggagatcatcgagcaccggttcgggatccacgatggcgagccgaagacgctacat 17607 Query: 399 gtgatcggcgacatgtacggcttgtccaaggagcggatccggcagctccagaaccgggcc 458 || ||||| ||||||| || ||||||||||| ||||| ||||||| ||||||||||| Sbjct: 17608 gtcatcggggacatgtttgggctgtccaaggagaggatcaggcagctgcagaaccgggcg 17667 Query: 459 ttggacaagctgaagcggag 478 |||| ||||| ||| |||| Sbjct: 17668 ctggagaagctcaagaggag 17687 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Plus Query: 33 ttgccggagagcgtgtatgctcgtctgaaaaaggtggggaaagcaaggctggagtgcatc 92 |||| |||||| |||||||| | ||||| ||||||||| || |||||| |||| |||||| Sbjct: 16778 ttgcaggagagtgtgtatgcgcttctgagaaaggtgggcaaggcaaggatggaatgcatc 16837 Query: 93 ttggaaggggagcagcctactaaccaaaatgtagctaggcgtgcgggcatctcgatcgag 152 ||||||||||||| || || ||| || ||||| ||||| || |||||| | |||||| Sbjct: 16838 atggaaggggagcaacccaccaacgcgaacgtagcgaggcgcgccggcatcaccatcgag 16897 Query: 153 aagctggcgaaactcaaagcgaagaccagaaagccacgatcaatgcaggatcaagtttgg 212 ||||| ||||| ||| |||||| ||| | || || || || ||||||||||| || ||| Sbjct: 16898 aagcttgcgaagctccgagcgaaaacccggaaaccccggtcgatgcaggatcatgtctgg 16957 Query: 213 tc 214 || Sbjct: 16958 tc 16959
>gb|AF099112.1| Zea mays sigma factor SIG6 (sig6) mRNA, complete cds; nuclear gene for chloroplast product Length = 1823 Score = 153 bits (77), Expect = 7e-34 Identities = 166/195 (85%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 278 cgtggacaggatcatgatgaggcagcaggtgcgggagttcctg---ggcatcctgagcac 334 |||||||||| | |||||| ||||||||||||| |||||| || ||||||||| | Sbjct: 1435 cgtggacaggctgatgatgcggcagcaggtgcgcagcttcctgacggggatcctgagccc 1494 Query: 335 gagggagaaggagatcgtcgagcaccggttcgggatctacgacggcgagcccaagacgct 394 |||||||||||||| |||||||||||||||| ||| |||||||| |||||||||| || Sbjct: 1495 ccgggagaaggagatcatcgagcaccggttcggcatccacgacggccagcccaagaccct 1554 Query: 395 ccatgtgatcggcgacatgtacggcttgtccaaggagcggatccggcagctccagaaccg 454 ||||| |||||||||||||||||| ||||||||||| ||||||| ||| | |||||| Sbjct: 1555 gcatgtcatcggcgacatgtacggcctgtccaaggagaggatccgccaggtgcagaacaa 1614 Query: 455 ggccttggacaagct 469 |||| |||||||||| Sbjct: 1615 ggccctggacaagct 1629 Score = 117 bits (59), Expect = 4e-23 Identities = 209/259 (80%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaagactgattcggttgccggagagcgtgtatgctcgtctga 60 |||| ||||||||| |||||||||| || |||||||||||||| |||||||| | | ||| Sbjct: 1158 agtccatcttcaagaattcaagactaatccggttgccggagagtgtgtatgcacttttga 1217 Query: 61 aaaaggtggggaaagcaaggctggagtgcatcttggaaggggagcagcctactaaccaaa 120 |||||||| ||||| ||| |||| ||||| |||| ||||||||||| || ||| | Sbjct: 1218 ggaaggtgggcaaagcgaggatggaatgcataatggacggggagcagccgacgaacgagg 1277 Query: 121 atgtagctaggcgtgcgggcatctcgatcgagaagctggcgaaactcaaagcgaagacca 180 || || |||||||| |||||| |||| || |||||||||||||| | |||||| |||| Sbjct: 1278 tggtggcaaggcgtgctggcatcacgattgaaaagctggcgaaactgagagcgaaaacca 1337 Query: 181 gaaagccacgatcaatgcaggatcaagtttggtccaacgacgcagtcaccttccaggaga 240 | || ||| || |||||||||| ||| ||||| |||||| || || | |||||||| Sbjct: 1338 ggaaagtacggtccatgcaggatcgagtctggtcagacgacggtgtgacataccaggaga 1397 Query: 241 tcacggaggacccgaacat 259 |||| |||||||| ||||| Sbjct: 1398 tcaccgaggaccccaacat 1416
>ref|XM_865189.1| PREDICTED: Bos taurus similar to zinc finger, DHHC domain containing 22 (LOC613943), mRNA Length = 2939 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 ggtggggaaagcaaggctgga 85 ||||||||||||||||||||| Sbjct: 1971 ggtggggaaagcaaggctgga 1991
>emb|AL138640.1|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BAC clone T12K4 Length = 108879 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 agtctatcttcaagcattcaa 21 ||||||||||||||||||||| Sbjct: 42577 agtctatcttcaagcattcaa 42597
>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence Length = 209209 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 ccttccaggagatcacggaggaccc 253 |||||||||||| |||||||||||| Sbjct: 82049 ccttccaggagaacacggaggaccc 82073
>gb|AC105979.13| Mus musculus chromosome 14, clone RP24-301E12, complete sequence Length = 163688 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gagtgcatcttggaagggga 103 |||||||||||||||||||| Sbjct: 102010 gagtgcatcttggaagggga 102029
>ref|XM_417508.1| PREDICTED: Gallus gallus similar to Potential phospholipid-transporting ATPase IIA (LOC419345), mRNA Length = 10950 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 ttcctgggcatcctgagcacgagg 338 |||||||| ||||||||||||||| Sbjct: 3424 ttcctgggtatcctgagcacgagg 3447
>gb|AC134898.4| Mus musculus BAC clone RP23-478H2 from chromosome 14, complete sequence Length = 213348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gagtgcatcttggaagggga 103 |||||||||||||||||||| Sbjct: 25513 gagtgcatcttggaagggga 25532
>ref|XM_762043.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_514_15116_17125) partial mRNA Length = 2010 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttcctgggcatcctgagcac 334 |||||||||||||||||||| Sbjct: 1982 ttcctgggcatcctgagcac 1963
>gb|AC021074.15| Homo sapiens 3 BAC RP11-372E1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183100 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aaggctggagtgcatcttgg 96 |||||||||||||||||||| Sbjct: 78049 aaggctggagtgcatcttgg 78030
>gb|AC011243.8| Homo sapiens BAC clone RP11-491M19 from 2, complete sequence Length = 137269 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aggctggagtgcatcttgga 97 |||||||||||||||||||| Sbjct: 112488 aggctggagtgcatcttgga 112469
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 agcaggtgcgggagttcctg 320 |||||||||||||||||||| Sbjct: 3316317 agcaggtgcgggagttcctg 3316336
>gb|U66560.1|MAU66560 Mycobacterium avium EmbR (embR), EmbA (embA) and EmbB (embB) genes, complete cds Length = 7853 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ggagatcgtcgagcaccggt 363 |||||||||||||||||||| Sbjct: 711 ggagatcgtcgagcaccggt 730
>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20, complete sequence Length = 208922 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 atgcaggatcaagtttggtc 214 |||||||||||||||||||| Sbjct: 176697 atgcaggatcaagtttggtc 176678 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,243,007 Number of Sequences: 3902068 Number of extensions: 4243007 Number of successful extensions: 87068 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86932 Number of HSP's gapped (non-prelim): 123 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
