>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley,
           Prato, mRNA Chloroplast, 939 nt]
          Length = 939

 Score =  391 bits (197), Expect = e-106
 Identities = 238/248 (95%), Gaps = 9/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatccgtcgatttcaccgaccaaggaggtttcaggtggtctgaattattattttgggg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 694 taaatccgtcgatttcaccgaccaaggaggttt-aggtggtctgaattattattttgggg 752

                                                                       
Query: 61  tgctgaggatgtacaaagtgtggaggagtaggtggcagtgcaaaaacgtgttgtaatctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 753 tgctgaggatgtacaaagtgtggaggagtaggtggcagtgcaaaaacgtgttgtaat--- 809

                                                                       
Query: 121 aaagttccggtggtgaaactttgtccttgtggattcgcccatggcttccgacggaggctg 180
              |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 810 ---gttccggtggtgaaactttgtccttgtggattcgcccatggcttccgacgga-gctg 865

                                                                       
Query: 181 tacttgtaatat-cacccatgcgtgttattttaaaacatggcaaaacatactactagttt 239
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tacttgtaatatatacccatgcgtgttattttaaaacatggcaaaacatactactagttt 925

                   
Query: 240 gaagcatt 247
           ||||||||
Sbjct: 926 gaagcatt 933

>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V,
             complete sequence
          Length = 114056

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 70    tgtacaaagtgtggaggagtagg 92
             |||||||||||||||||||||||
Sbjct: 37504 tgtacaaagtgtggaggagtagg 37526

>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence
          Length = 186333

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    gtgtggaggagtaggtggcag 98
             |||||||||||||||||||||
Sbjct: 11756 gtgtggaggagtaggtggcag 11776

>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence
          Length = 165177

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    gtgtggaggagtaggtggcag 98
             |||||||||||||||||||||
Sbjct: 60677 gtgtggaggagtaggtggcag 60657

>gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, complete sequence
          Length = 199117

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 204    gttattttaaaacatggcaaaacat 228
              |||||||||||||| ||||||||||
Sbjct: 171049 gttattttaaaacaaggcaaaacat 171025

>gb|BC036687.1| Homo sapiens cDNA clone IMAGE:5259465
          Length = 3993

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  ggtggtgaaactttgtccttg 149
            |||||||||||||||||||||
Sbjct: 3785 ggtggtgaaactttgtccttg 3765

>gb|AC161815.4| Mus musculus BAC clone RP23-353C21 from chromosome 16, complete
             sequence
          Length = 197690

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 204   gttattttaaaacatggcaaaacat 228
             |||||||||||||| ||||||||||
Sbjct: 17052 gttattttaaaacaaggcaaaacat 17028

>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete
             sequence
          Length = 222209

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    aattattattttggggtgctg 65
             |||||||||||||||||||||
Sbjct: 97929 aattattattttggggtgctg 97909

>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence
          Length = 172400

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    ggtggtgaaactttgtccttg 149
              |||||||||||||||||||||
Sbjct: 170083 ggtggtgaaactttgtccttg 170063

>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively
            spliced
          Length = 9504

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   gtgtggaggagtaggtggcag 98
            |||||||||||||||||||||
Sbjct: 4324 gtgtggaggagtaggtggcag 4304

>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence
          Length = 173842

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    ggtggtgaaactttgtccttg 149
              |||||||||||||||||||||
Sbjct: 111563 ggtggtgaaactttgtccttg 111543

>dbj|AK027185.1| Homo sapiens cDNA: FLJ23532 fis, clone LNG06911
          Length = 3189

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  ggtggtgaaactttgtccttg 149
            |||||||||||||||||||||
Sbjct: 2970 ggtggtgaaactttgtccttg 2950

>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete
             sequence
          Length = 229685

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    gtgtggaggagtaggtggcag 98
             |||||||||||||||||||||
Sbjct: 31538 gtgtggaggagtaggtggcag 31518

>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence
          Length = 217949

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   aattattattttggggtgctg 65
            |||||||||||||||||||||
Sbjct: 9829 aattattattttggggtgctg 9849

>emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in linkage group 3,
             complete sequence
          Length = 171119

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aaacatggcaaaacatacta 232
             ||||||||||||||||||||
Sbjct: 14271 aaacatggcaaaacatacta 14290

>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete
              sequence
          Length = 215829

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     attttggggtgctgaggatg 71
              ||||||||||||||||||||
Sbjct: 132183 attttggggtgctgaggatg 132164

>gb|AC119673.3| Homo sapiens chromosome 1 clone RP11-212H11, complete sequence
          Length = 187660

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gttattttaaaacatggcaa 223
             ||||||||||||||||||||
Sbjct: 69174 gttattttaaaacatggcaa 69193

>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9,
             complete sequence
          Length = 179135

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tgaattattattttggggtg 62
             ||||||||||||||||||||
Sbjct: 16922 tgaattattattttggggtg 16903

>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence
          Length = 55514

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tacttgtaatatcacccatg 200
             ||||||||||||||||||||
Sbjct: 11096 tacttgtaatatcacccatg 11077

>emb|BX088583.12| Zebrafish DNA sequence from clone CH211-211K8 in linkage group 22,
             complete sequence
          Length = 202012

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   taaaacatggcaaaacatac 230
             ||||||||||||||||||||
Sbjct: 34794 taaaacatggcaaaacatac 34813

>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   ttttaaaacatggcaaaacatact 231
             ||||||||||||||||| ||||||
Sbjct: 86716 ttttaaaacatggcaaaccatact 86693


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,827,544
Number of Sequences: 3902068
Number of extensions: 2827544
Number of successful extensions: 53585
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53547
Number of HSP's gapped (non-prelim): 35
length of query: 257
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 235
effective length of database: 17,147,199,772
effective search space: 4029591946420
effective search space used: 4029591946420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)