ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7j01 |
|---|---|
| Clone Library Name | barley_pub |
>TERF2_HUMAN (Q15554) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 500 Score = 31.2 bits (69), Expect(2) = 0.063 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +3 Query: 438 WTEDEHRRFLAGLEKLGKGDWRGISRHF 521 WT +E AG++K G+G+W IS+++ Sbjct: 450 WTVEESEWVKAGVQKYGEGNWAAISKNY 477 Score = 23.9 bits (50), Expect(2) = 0.063 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +2 Query: 362 PGEDGPRVPLGRTHGQGSGEEE 427 PGE P+VP G+ + EE+ Sbjct: 399 PGEKNPKVPKGKWNSSNGVEEK 420
>MYB_CHICK (P01103) Myb proto-oncogene protein (C-myb)| Length = 641 Score = 34.7 bits (78), Expect = 0.18 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 354 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 530 EE E H Y DGL+ +A +R G WT +E + +E+ G DW+ I+ F+ Sbjct: 16 EEDVEMYDHDY--DGLLPKAGKRHLGKTRWTREEDEKLKKLVEQNGTEDWKVIA-SFLPN 72 Query: 531 RTPTQ 545 RT Q Sbjct: 73 RTDVQ 77
>MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1| Length = 324 Score = 33.5 bits (75), Expect = 0.40 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +3 Query: 402 MGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQ 545 M ++++G PW+ E +R + ++ LG G+W ++R + TRTP Q Sbjct: 1 MSNMPDQRRG-PWSAGEDQRLIKLVKDLGPGNWVNVAR-ILGTRTPKQ 46
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 32.3 bits (72), Expect = 0.89 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 8/41 (19%) Frame = +3 Query: 405 GRAQER--KKGVP------WTEDEHRRFLAGLEKLGKGDWR 503 G+A +R KK VP WTEDE +RF+ GL + GK +R Sbjct: 377 GKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 417
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 32.3 bits (72), Expect = 0.89 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 8/41 (19%) Frame = +3 Query: 405 GRAQER--KKGVP------WTEDEHRRFLAGLEKLGKGDWR 503 G+A +R KK VP WTEDE +RF+ GL + GK +R Sbjct: 376 GKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 416
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 32.3 bits (72), Expect = 0.89 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 8/41 (19%) Frame = +3 Query: 405 GRAQER--KKGVP------WTEDEHRRFLAGLEKLGKGDWR 503 G+A +R KK VP WTEDE +RF+ GL + GK +R Sbjct: 377 GKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 417
>MYB_BOVIN (P46200) Myb proto-oncogene protein (C-myb)| Length = 640 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3 Query: 354 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 530 +E E H Y DGL+ ++ +R G WT +E + +E+ G DW+ I+ +++ Sbjct: 16 DEDIEMCDHDY--DGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPN 72 Query: 531 RTPTQ 545 RT Q Sbjct: 73 RTDVQ 77
>MYB_MOUSE (P06876) Myb proto-oncogene protein (C-myb)| Length = 636 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3 Query: 354 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 530 +E E H Y DGL+ ++ +R G WT +E + +E+ G DW+ I+ +++ Sbjct: 16 DEDIEMCDHDY--DGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPN 72 Query: 531 RTPTQ 545 RT Q Sbjct: 73 RTDVQ 77
>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)| Length = 640 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3 Query: 354 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 530 +E E H Y DGL+ ++ +R G WT +E + +E+ G DW+ I+ +++ Sbjct: 16 DEDFEMCDHDY--DGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPN 72 Query: 531 RTPTQ 545 RT Q Sbjct: 73 RTDVQ 77
>COT1_MOUSE (Q60632) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)| Length = 422 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 362 PGEDGPRVPLGRTHGQGSGEEERGSMD*GRAPEVPGRPG 478 PG P R G G+GE+++ P+ PG+PG Sbjct: 20 PGGPNPAAQAARGGGGGAGEQQQAGSGAPHTPQTPGQPG 58
>RMT2_GIBZE (Q4IQK7) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 425 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 432 VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVT 527 V W E + ++GLEK G+G+W G+ R + T Sbjct: 389 VEWEESDVD--MSGLEKAGEGEWEGVRRRYWT 418
>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor| RLTR1) Length = 257 Score = 30.8 bits (68), Expect = 2.6 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +3 Query: 423 KKGVPWTEDEHRRFLAGLEKLGKGDWRGISR 515 KKG PWT +E + +A +++ G G+WR + + Sbjct: 13 KKG-PWTPEEDKVLVAHIQRHGHGNWRALPK 42
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 90 GMARKCSSCGHNGHNSRTCSGHRGLESGGG 179 G C CG GH +R CS G SGGG Sbjct: 133 GGDNSCFKCGEPGHMARECSQGGGGYSGGG 162
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/51 (39%), Positives = 21/51 (41%) Frame = -1 Query: 527 GDEVPGDASPVAFPELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPVA 375 GD PG A P P AGQ PP L P P P P V P+A Sbjct: 214 GDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLA 264
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/51 (39%), Positives = 21/51 (41%) Frame = -1 Query: 527 GDEVPGDASPVAFPELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPVA 375 GD PG A P P AGQ PP L P P P P V P+A Sbjct: 214 GDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLA 264
>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I| Length = 390 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +3 Query: 420 RKKGVPWTEDEHRRFLAGLEKLGKGDWRGI---SRHFVTTRTP 539 RK V WTE E L G + G G+W+ I R T R+P Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSP 94
>TERF1_MOUSE (P70371) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) Length = 421 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +3 Query: 420 RKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHF 521 R+K W +E R G++K G+G+W I H+ Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHY 397
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +3 Query: 102 KCSSCGHNGHNSRTCSGH-RGL-ESGGGLRLFG 194 KC CG GH SR+C + +GL GGG +L G Sbjct: 185 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCG 217
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 99 RKCSSCGHNGHNSRTCSGHRGLESGGGLR 185 R C CG GH SR C +G SG G R Sbjct: 168 RTCYKCGDAGHISRDCPNGQGGYSGAGDR 196 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 99 RKCSSCGHNGHNSRTCSGHRGLESGGGLR 185 R C CG GH SR C +G SG G R Sbjct: 140 RTCYKCGDAGHISRDCPNGQGGYSGAGDR 168 Score = 29.3 bits (64), Expect = 7.6 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 99 RKCSSCGHNGHNSRTCSGHRGLESG 173 RKC CG +GH SR C SG Sbjct: 196 RKCYKCGESGHMSRECPSAGSTGSG 220 Score = 28.9 bits (63), Expect = 9.9 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 102 KCSSCGHNGHNSRTCSGHRGLESGG 176 +C CG GH SR C +G GG Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGG 122
>MYBB_HUMAN (P10244) Myb-related protein B (B-Myb)| Length = 700 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +3 Query: 390 SDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHF 521 +D + ++ K V WT +E + A + + G+ DW+ ++ HF Sbjct: 18 TDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHF 61
>ATG23_KLULA (Q6CWA7) Autophagy-related protein 23| Length = 426 Score = 29.6 bits (65), Expect = 5.8 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = -1 Query: 524 DEVPGDASPVAF------PELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPV 378 DE+ G P+ PELLQ G+ PP + LS S HES + P+ Sbjct: 371 DELNGKMQPIPIKSSAKTPELLQMGKSPPKVALSK-----EYASNLHESTEDFPL 420
>YJIE_ECOLI (P39376) Putative HTH-type transcriptional regulator yjiE| Length = 303 Score = 29.6 bits (65), Expect = 5.8 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 23 EXPTNYLLLLQPSWFPTLCAVDRHGEEMLEL-RPQWPQL 136 E P +++ L + FP +CA D HGE + L +P +P L Sbjct: 161 EAPFDHIRLFESQLFP-VCASDEHGEALFNLAQPHFPLL 198
>YR029_MIMIV (Q5UPA8) Hypothetical protein R29| Length = 108 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +3 Query: 90 GMARKCSSCGHNGH----NSRTCSGHRGLESGGGLRLF 191 G R+CS+CGH+ H N HR +ES LR F Sbjct: 55 GRIRRCSNCGHDLHGGIANKIETVVHRDIESDKMLRRF 92
>TWST1_GORGO (Q8MI06) Twist-related protein 1| Length = 203 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 406 AGLRRGRKGFHGLRTSTGGSWPAWRSSGKATGEASPGTSSPRAR 537 +G R GRK R++ GG+ P +SG A G PG+ + R Sbjct: 31 SGKRGGRKRRSSRRSAGGGAGPGGAASGGAGGGDEPGSPAQGKR 74
>MYB_XENLA (Q08759) Myb protein| Length = 624 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 354 EESPEKMGHGYLSDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTR 533 ++ E H Y DGL+ + + WT +E + +E+ G +W+ I+ F+ R Sbjct: 14 DDEIEMYEHDY--DGLLSKGKRHLGKTRWTREEDEKLKKLVEQNGTEEWKVIA-SFLPNR 70 Query: 534 TPTQ 545 T Q Sbjct: 71 TDVQ 74
>MYBB_MOUSE (P48972) Myb-related protein B (B-Myb)| Length = 704 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = +3 Query: 357 ESPEKMGHGYLSDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHF 521 E +++ + + L+ + R K V WT +E + A + + G+ DW+ ++ HF Sbjct: 8 EDLDELHYQDVDSDLLEQRDNRCK-VKWTHEEDEQLRALVRQFGQQDWKFLASHF 61
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/51 (37%), Positives = 20/51 (39%) Frame = -1 Query: 527 GDEVPGDASPVAFPELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPVA 375 GD PG P P AGQ PP L P P P P V P+A Sbjct: 214 GDRFPGPTGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLA 264
>COT1_BOVIN (Q9TTR8) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)| Length = 424 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +2 Query: 362 PGEDGPRVPLGRTHGQGSGEEERGSMD*G--RAPEVPGRPG 478 PG P R G G+GE+++ G P+ PG+PG Sbjct: 20 PGGPNPAAQAARGGGGGAGEQQQQQAGSGAPHTPQTPGQPG 60
>MYBB_XENLA (P52551) Myb-related protein B (B-Myb) (Myb-related protein 1)| (XMYB1) Length = 743 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +3 Query: 390 SDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQ 545 +D + +E + V WT +E A ++K G+G+W+ I+ + + RT Q Sbjct: 18 TDSDVPEPKENRVKVKWTPEEDETLKALVKKHGQGEWKTIASN-LNNRTEQQ 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,060,931 Number of Sequences: 219361 Number of extensions: 898001 Number of successful extensions: 4790 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4773 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
