ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WDR47_MOUSE (Q8CGF6) WD-repeat protein 47 45 1e-04
2WDR47_HUMAN (O94967) WD-repeat protein 47 45 1e-04
3CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associ... 37 0.037
4CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated pro... 37 0.037
5AMPH_RAT (O08838) Amphiphysin 34 0.24
6RT15_DROME (Q8WTC1) 28S ribosomal protein S15, mitochondrial pre... 34 0.24
7AMPH_MOUSE (Q7TQF7) Amphiphysin 34 0.24
8AMPH_HUMAN (P49418) Amphiphysin 34 0.24
9AMPH_CHICK (P50478) Amphiphysin 33 0.70
10NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC) 33 0.70
11TRAY4_ECOLI (P05836) Protein traY 32 0.92
12TRUD2_METJA (Q58759) Probable tRNA pseudouridine synthase D 2 (E... 32 1.2
13CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein) 32 1.6
14NUCB1_MOUSE (Q02819) Nucleobindin-1 precursor (CALNUC) 32 1.6
15YM39_YEAST (Q03829) Putative mitochondrial carrier YMR166C 32 1.6
16VE06_VACCV (P21607) Protein E6 31 2.7
17T2EB_XENLA (P29540) Transcription initiation factor IIE beta sub... 30 3.5
18VE06_VARV (P33819) Protein E6 30 3.5
19SYA_OCEIH (Q8EPS9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 30 4.5
20NUCB1_RAT (Q63083) Nucleobindin-1 precursor (CALNUC) (Bone 63 kD... 30 4.5
21Y376_AQUAE (O66698) Hypothetical protein aq_376 30 4.5
22SYCP1_RAT (Q03410) Synaptonemal complex protein 1 (SCP-1) 30 5.9
23OTU_DROME (P10383) Protein ovarian tumor locus 30 5.9
24COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protei... 29 7.8
25PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 ... 29 7.8
26RAD50_METMA (Q8PUY4) DNA double-strand break repair rad50 ATPase 29 7.8
27VE06_VACCC (P21047) Protein E6 29 7.8

>WDR47_MOUSE (Q8CGF6) WD-repeat protein 47|
          Length = 920

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
 Frame = +1

Query: 100 ELVFLILQFLDEEKFKETVHKLEQESG-----FYFNMKYFEDEVINGNWDEVERY---LG 255
           E++ LIL FL+ +K   ++  LE+ESG     F  +M +    +++G WDEV ++   L 
Sbjct: 13  EIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLE 72

Query: 256 GFTKVDDNRYSMKIFFEIRKQKYLEAL 336
              K D  R+     + I KQK+LEAL
Sbjct: 73  CMEKFDKKRFR----YIILKQKFLEAL 95



to top

>WDR47_HUMAN (O94967) WD-repeat protein 47|
          Length = 919

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
 Frame = +1

Query: 100 ELVFLILQFLDEEKFKETVHKLEQESG-----FYFNMKYFEDEVINGNWDEVERY---LG 255
           E++ LIL FL+ +K   ++  LE+ESG     F  +M +    +++G WDEV ++   L 
Sbjct: 13  EIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLE 72

Query: 256 GFTKVDDNRYSMKIFFEIRKQKYLEAL 336
              K D  R+     + I KQK+LEAL
Sbjct: 73  CMEKFDKKRFR----YIILKQKFLEAL 95



to top

>CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associated protein 1|
           with RanBPM) (Twa1)
          Length = 228

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
 Frame = +1

Query: 112 LILQFLDEEKFKETVHKLEQESGFYFNMKY--------FEDEVINGNWDEVERYLGGF-- 261
           LI+ +L  E FKE   K   ESG   ++            + ++ G   E    +     
Sbjct: 32  LIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91

Query: 262 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLT 441
             +D NRY   ++F +++Q  +E + + +   A+E     L      + E   E+ + L 
Sbjct: 92  ELLDTNRY---LYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLA 148

Query: 442 LENFRENEQLSKYGD 486
           L  F   E+ S +GD
Sbjct: 149 LLAFDSPEE-SPFGD 162



to top

>CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated protein 1 with|
           RanBPM) (Twa1)
          Length = 228

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
 Frame = +1

Query: 112 LILQFLDEEKFKETVHKLEQESGFYFNMKY--------FEDEVINGNWDEVERYLGGF-- 261
           LI+ +L  E FKE   K   ESG   ++            + ++ G   E    +     
Sbjct: 32  LIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91

Query: 262 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLT 441
             +D NRY   ++F +++Q  +E + + +   A+E     L      + E   E+ + L 
Sbjct: 92  ELLDTNRY---LYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLA 148

Query: 442 LENFRENEQLSKYGD 486
           L  F   E+ S +GD
Sbjct: 149 LLAFDSPEE-SPFGD 162



to top

>AMPH_RAT (O08838) Amphiphysin|
          Length = 683

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 202 FEDEVINGNWDEVERYLGGFTKVDDN--RYSMKIFFEIRKQKYLEALDKHDR------SK 357
           F  ++++G+   ++ YLG F  + +   + S K+      + +LEAL    R      SK
Sbjct: 109 FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISK 168

Query: 358 AVEILVKDLKVFASFNEELFKEITQL 435
           A E   K  KVF  FN +L +E+  L
Sbjct: 169 AEEEFQKAQKVFEEFNVDLQEELPSL 194



to top

>RT15_DROME (Q8WTC1) 28S ribosomal protein S15, mitochondrial precursor|
           (MRS-S15) (Bonsai protein) (DmMRPS15)
          Length = 280

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 EKFKETVHKLEQESG--FYFNMKYFEDEVINGNWDEVERYLGGFTKVDDNRYSMKIFFEI 309
           +K  E+V  L + S    Y   K++ DE++     EV+R+   F  ++     M      
Sbjct: 68  DKADESVKSLFKLSNNASYLTTKFYRDEMVK----EVQRHAQDFGSMEAKLAKMTAVI-- 121

Query: 310 RKQKYLEALDKHDRSKAVEILVKDL 384
             ++Y E +DKH R K +++ +K+L
Sbjct: 122 --RRYQEHMDKHPRDKMIKVRLKEL 144



to top

>AMPH_MOUSE (Q7TQF7) Amphiphysin|
          Length = 686

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 202 FEDEVINGNWDEVERYLGGFTKVDDN--RYSMKIFFEIRKQKYLEALDKHDR------SK 357
           F  ++++G+   ++ YLG F  + +   + S K+      + +LEAL    R      SK
Sbjct: 109 FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISK 168

Query: 358 AVEILVKDLKVFASFNEELFKEITQL 435
           A E   K  KVF  FN +L +E+  L
Sbjct: 169 AEEEFQKAQKVFEEFNVDLQEELPSL 194



to top

>AMPH_HUMAN (P49418) Amphiphysin|
          Length = 695

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 202 FEDEVINGNWDEVERYLGGFTKVDDN--RYSMKIFFEIRKQKYLEALDKHDR------SK 357
           F  ++++G+   ++ YLG F  + +   + S K+      + +LEAL    R      SK
Sbjct: 109 FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISK 168

Query: 358 AVEILVKDLKVFASFNEELFKEITQL 435
           A E   K  KVF  FN +L +E+  L
Sbjct: 169 AEEEFQKAQKVFEEFNVDLQEELPSL 194



to top

>AMPH_CHICK (P50478) Amphiphysin|
          Length = 682

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
 Frame = +1

Query: 202 FEDEVINGNWDEVERYLGGFTKVDDN--RYSMKIFFEIRKQKYLEALDKHDR------SK 357
           F  ++++G+   ++ YLG F  +     + S K+      + +LEAL    R      +K
Sbjct: 109 FHQKLVDGSLLTLDTYLGQFPDIKTRIAKRSRKLVDYDSARHHLEALQSSKRKDEGRITK 168

Query: 358 AVEILVKDLKVFASFNEELFKEITQL 435
           A E   K  KVF  FN +L +E+  L
Sbjct: 169 AEEEFQKAQKVFEEFNTDLQEELPSL 194



to top

>NUCB1_HUMAN (Q02818) Nucleobindin-1 precursor (CALNUC)|
          Length = 461

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
 Frame = +1

Query: 118 LQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVIN--GNWDEVERYLGGFTKVDDNRYSM 291
           L+ L EE+ KE   KLE++       ++ E   +N  G+  +++        +D NR++ 
Sbjct: 191 LESLGEEQRKEAERKLEEQQ-----RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNP 245

Query: 292 KIFFEIRKQKYLEALDKHDRSKAVEILVKDL-KVFASFNEE----------------LFK 420
           K FF +        LD+ +      +  K+L KV+   NEE                + K
Sbjct: 246 KTFFILHDINSDGVLDEQELEA---LFTKELEKVYDPKNEEDDMREMEEERLRMREHVMK 302

Query: 421 EIT----QLLTLENFRENEQLSKYGDT 489
            +     +L+TLE F  + Q  ++GDT
Sbjct: 303 NVDTNQDRLVTLEEFLASTQRKEFGDT 329



to top

>TRAY4_ECOLI (P05836) Protein traY|
          Length = 75

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +1

Query: 304 EIRKQKYLEALDKHDRSKAVEILVK---DLKVFASF-NEELFKEITQ 432
           E    + ++A D+  RSK +E+ ++    LK F  F NEE+F+E+T+
Sbjct: 20  EDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYNEEIFREVTE 66



to top

>TRUD2_METJA (Q58759) Probable tRNA pseudouridine synthase D 2 (EC 5.4.99.-)|
           (tRNA-uridine isomerase D 2) (tRNA pseudouridylate
           synthase D 2)
          Length = 422

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 15/152 (9%)
 Frame = +1

Query: 130 DEEKFKETVHKLE---------QESGFYFNMKYFEDEVINGNWDEVERYLGGFTKVDDNR 282
           D  K KE +  LE         Q  G  F+ K+   EVI GN++E  + L          
Sbjct: 146 DIPKIKENLKYLEFGAPNYFDSQRFGSVFDKKFIAKEVIKGNYEEAVKIL---------- 195

Query: 283 YSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLENFREN 462
                            L K+ +S+  + L+KDLK F   N   + +I + +   N +  
Sbjct: 196 -----------------LTKYKKSE--KKLIKDLKRFIDKNWGDWDKIWEYIKENNIKSR 236

Query: 463 ------EQLSKYGDTKSARAIMLVELKKLIEA 540
                 ++L K  D K A + +   LKK+  A
Sbjct: 237 LYVNMVKELKKSNDYKKALSYVDDRLKKIFVA 268



to top

>CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)|
          Length = 2663

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = +1

Query: 115  ILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVINGNWDEVERYLGGFTKVDDNRYSMK 294
            IL+   E +F     + +Q       M  F +E +N  +D +E+   G  K +D    + 
Sbjct: 2204 ILKDFSESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFD-IEKLKNGIQKENDRICQVN 2262

Query: 295  IFFEIRKQKYL-EALDKHDRSKAV-EILVKDLKVFASFNEELFKEITQLLT 441
             FF  R    + E+ +  +RS  + +   +DLK     NE+LFK    L T
Sbjct: 2263 NFFNNRIIAIMNESTEFEERSATISKEWEQDLKSLKEKNEKLFKNYQTLKT 2313



to top

>NUCB1_MOUSE (Q02819) Nucleobindin-1 precursor (CALNUC)|
          Length = 459

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
 Frame = +1

Query: 118 LQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVIN--GNWDEVERYLGGFTKVDDNRYSM 291
           L+ L EE+ KE   KL+++       ++ E   +N  G+  +++        +D NR++ 
Sbjct: 190 LESLGEEQRKEAERKLQEQQ-----RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNP 244

Query: 292 KIFFEIRKQKYLEALDKHDRSKAVEILVKDL-KVFASFNEE----------------LFK 420
           K FF +        LD+ +      +  K+L KV+   NEE                + K
Sbjct: 245 KTFFILHDINSDGVLDEQELEA---LFTKELEKVYDPKNEEDDMREMEEERLRMREHVMK 301

Query: 421 EIT----QLLTLENFRENEQLSKYGDT 489
            +     +L+TLE F  + Q  ++GDT
Sbjct: 302 NVDTNQDRLVTLEEFLASTQRKEFGDT 328



to top

>YM39_YEAST (Q03829) Putative mitochondrial carrier YMR166C|
          Length = 368

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 85  SSLSRELVFLILQFLDEEKFKETVHKLEQESG 180
           ++L+R+L F  LQF   EKF++   K+EQ+ G
Sbjct: 218 ATLARDLPFSALQFAFYEKFRQLAFKIEQKDG 249



to top

>VE06_VACCV (P21607) Protein E6|
          Length = 567

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 136 EKFKETVHKLEQESGFYFNMKYFED--EVINGNWDEV 240
           + +KETVHKL Q+  F    KY ++  E+I  N+D V
Sbjct: 104 QSYKETVHKLTQDEKFLEVAKYMDELGELIGVNYDLV 140



to top

>T2EB_XENLA (P29540) Transcription initiation factor IIE beta subunit|
           (TFIIE-beta)
          Length = 288

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +1

Query: 265 KVDDNRYSMKIFFEIRKQK-YLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLT 441
           ++ D +Y+ K  + ++ +K  L  LDKHD+     IL++D++      ++  K +   + 
Sbjct: 128 EIIDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKAIKALGDQIV 187

Query: 442 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPL 549
                + +++  Y D KS +  +  E +KL  + P+
Sbjct: 188 FVTRPDKKKILFYND-KSCQFTVDEEFQKLWRSVPV 222



to top

>VE06_VARV (P33819) Protein E6|
          Length = 567

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 136 EKFKETVHKLEQESGFYFNMKYFED--EVINGNWDEV 240
           + +KETVHKL Q+  F    +Y E+  E+I  N+D V
Sbjct: 104 QSYKETVHKLTQDEKFLEVAEYMEELGELIGVNYDLV 140



to top

>SYA_OCEIH (Q8EPS9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 879

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +1

Query: 145 KETVHKLEQESGFYFNMKYFEDEVINGNWDEVERYLGGFTKVDDNRYSMKIFFEIRKQKY 324
           KE   +  ++ GF  N   ++ E+      + ER      KVD  +    IF EI     
Sbjct: 403 KELTEEYVEQQGFTVNQAGYDKEMNK----QRERARNARQKVDSMQVQDTIFTEINVDST 458

Query: 325 LEALDKHDRSKAVEILVKDLKVFASFNE 408
               D+  +   +E LVKD       N+
Sbjct: 459 FVGYDQLQKETTIEALVKDKNQIEEANQ 486



to top

>NUCB1_RAT (Q63083) Nucleobindin-1 precursor (CALNUC) (Bone 63 kDa|
           calcium-binding protein)
          Length = 459

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
 Frame = +1

Query: 118 LQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVIN--GNWDEVERYLGGFTKVDDNRYSM 291
           L+ L EE+ KE   KL+++       ++ E   +N  G+  +++        +D NR++ 
Sbjct: 190 LESLGEEQRKEAERKLQEQQ-----RRHREHPKVNVPGSQAQLKEVWEELDGLDPNRFNP 244

Query: 292 KIFFEIRKQKYLEALDKHDRSKAVEILVKDL-KVFASFNEE----------------LFK 420
           K FF +        LD+ +      +  K+L KV+   NEE                + K
Sbjct: 245 KTFFILHDINSDGVLDEQELEA---LFTKELEKVYDPKNEEDDMREMEEERLRMREHVMK 301

Query: 421 EIT----QLLTLENFRENEQLSKYGDT 489
            +     +L+TLE F  + Q  ++G+T
Sbjct: 302 NVDTNQDRLVTLEEFLASTQRKEFGET 328



to top

>Y376_AQUAE (O66698) Hypothetical protein aq_376|
          Length = 313

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
 Frame = +1

Query: 67  VGEARMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVINGNWD---- 234
           V E R S++   ++FL     DE KFK+ + K+E+         + E E +   W+    
Sbjct: 130 VREVRPSNVKATVIFLSSAKYDE-KFKKLMEKVEEIPTINDFFDFLEKEKMRLPWEMQLR 188

Query: 235 ---EVERYL-------------GGFTKVDDNRYSMKIFF-EIRKQKYLEALDKHDRSKAV 363
              E  R L             G F +++D +  +  FF +I   KY E LD  +  K  
Sbjct: 189 LINEFSRSLKYVYVIGSVNSSSGSFEQIEDFKLIVNKFFPQIEVIKYREGLDFENLEKNF 248

Query: 364 EIL 372
            +L
Sbjct: 249 GVL 251



to top

>SYCP1_RAT (Q03410) Synaptonemal complex protein 1 (SCP-1)|
          Length = 997

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
 Frame = +1

Query: 97  RELVFLILQFLDEEKFKETVHKLEQESGFYFNMK--YFEDEVINGNWDEVERYLGGFTKV 270
           ++L FL+ +  D+    E   KL+ E+    N K  +   E+ +             T  
Sbjct: 284 KDLTFLLEESRDKANQLEEKTKLQDENLKELNEKKDHLTSELEDIKMSMQRSMSTQKTLE 343

Query: 271 DDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQ------ 432
           +D + + K  +++ ++K  +  + +       ++V +LK      EEL +   Q      
Sbjct: 344 EDLQIATKTIYQLTEEKEAQMEELNKAKTTHSLVVTELKATTCTLEELLRTEQQRLENNE 403

Query: 433 ----LLTLENFRENEQLSKYGDTKSARAIMLVELKKLI 534
               L+T+E  +++ +L +    K+ + + L ELK ++
Sbjct: 404 DQLKLITMELQKKSSELEEMTKFKNNKEVELEELKTIL 441



to top

>OTU_DROME (P10383) Protein ovarian tumor locus|
          Length = 853

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 74  SPTPHPP--RGAVNLAYGGAGPP 12
           S TPHPP   G V + +GG GPP
Sbjct: 559 SGTPHPPPTEGCVYMPFGGYGPP 581



to top

>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2|
          COP)
          Length = 205

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 77 ASPTPHPPRGAVNLAYGGAGPPT 9
          A P PHP  GA     GGA PPT
Sbjct: 6  AWPRPHPGEGASAAQAGGAAPPT 28



to top

>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)|
          Length = 1522

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
 Frame = +1

Query: 133 EEKFKETVHKLEQESGFY-----FNMKYFE------------DEVINGNWDEVERYLGGF 261
           + +F+E +HKLE+E   Y      NM++ E             EV   NW  +   LGG 
Sbjct: 645 KNQFEENLHKLEEERYEYDRHIGANMRFIELLQIHADKMLKMSEVEKANW-TLPSNLGGK 703

Query: 262 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK 387
           +    ++   K++ +   Q+ +E L K+  S  + I+++ LK
Sbjct: 704 SVSIYHKVIKKVYGKEHAQQIIENLQKNP-SVTIPIVLERLK 744



to top

>RAD50_METMA (Q8PUY4) DNA double-strand break repair rad50 ATPase|
          Length = 1070

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 370 LVKDLKVFASFNEELFKEITQL-LTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANP 546
           L + LK FA    +  +++  L LTLE  R+NE+ +K    +SAR  +L E KKL +AN 
Sbjct: 730 LNEKLKAFAEKETQSKEKLEALELTLETARKNEEEAKKAHIESAR--LLGEAKKL-QANL 786

Query: 547 L 549
           L
Sbjct: 787 L 787



to top

>VE06_VACCC (P21047) Protein E6|
          Length = 567

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 136 EKFKETVHKLEQESGFYFNMKYFED--EVINGNWDEV 240
           + +KETVHKL Q+  F    +Y ++  E+I  N+D V
Sbjct: 104 QSYKETVHKLTQDEKFLEVAEYMDELGELIGVNYDLV 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,676,656
Number of Sequences: 219361
Number of extensions: 1276314
Number of successful extensions: 4195
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4193
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top