ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7h18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 96 2e-20
2HPPD_ARATH (P93836) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 70 1e-12
3HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 69 4e-12
4HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 66 2e-11

>HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 434

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 50/63 (79%), Positives = 50/63 (79%)
 Frame = +3

Query: 3   DRPTLXLEMIQRIGCXEKDERGEEYQXXXXXXXXXXNFSELXKSIEDYEKSLEAKQSAAV 182
           DRPTL LEMIQRIGC EKDERGEEYQ          NFSEL KSIEDYEKSLEAKQSAAV
Sbjct: 372 DRPTLFLEMIQRIGCMEKDERGEEYQKGGCGGFGKGNFSELFKSIEDYEKSLEAKQSAAV 431

Query: 183 QGS 191
           QGS
Sbjct: 432 QGS 434



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>HPPD_ARATH (P93836) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 445

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +3

Query: 3   DRPTLXLEMIQRIGCXEKDERGEEYQXXXXXXXXXXNFSELXKSIEDYEKSLEAKQ 170
           DRPT+ +E+IQR+GC  KDE G+ YQ          NFSEL KSIE+YEK+LEAKQ
Sbjct: 387 DRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAKQ 442



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>HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 442

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +3

Query: 3   DRPTLXLEMIQRIGCXEKDERGEEYQXXXXXXXXXXNFSELXKSIEDYEKSLEAKQ 170
           DRPTL +E+IQR+GC  KD+ G+ YQ          NFSEL KSIE+YEK+LEAKQ
Sbjct: 380 DRPTLFIEIIQRVGCMLKDDAGQMYQKGGCGGFGKGNFSELFKSIEEYEKTLEAKQ 435



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>HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 436

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 32/55 (58%), Positives = 38/55 (69%)
 Frame = +3

Query: 3   DRPTLXLEMIQRIGCXEKDERGEEYQXXXXXXXXXXNFSELXKSIEDYEKSLEAK 167
           DRPTL +E+IQR+GC  KDE G+ YQ          NFSEL KSIE+YEK LE+K
Sbjct: 374 DRPTLFIEIIQRVGCMMKDEEGKMYQKGGCGGFGKGNFSELFKSIEEYEKMLESK 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,805,613
Number of Sequences: 219361
Number of extensions: 361649
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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