ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7h13 |
|---|---|
| Clone Library Name | barley_pub |
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 33.9 bits (76), Expect = 0.36 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Frame = -2 Query: 489 EEPDPGEGGVDVAEEREKLEVEGDLTLHLAELVGVPRPHEAPVEVPAALAGPDERQRAPE 310 E+P +G V V + + G + P P APV VP L P Sbjct: 3208 EQPRAADGVVKVPPASKAPQQPGKEAAKTPDAKAAPTPTPAPVPVPVPLPAPAPAPHGEA 3267 Query: 309 RLLQL-----LHGVPRLRLLHEVRGVELVH 235 R+L + L G+P + GV++VH Sbjct: 3268 RILTVTPSNQLQGLPLTPPVVVTHGVQIVH 3297
>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I| Length = 602 Score = 33.5 bits (75), Expect = 0.47 Identities = 28/88 (31%), Positives = 36/88 (40%) Frame = -2 Query: 396 LVGVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHP 217 +V RP +P +P AL P+E P L PR L+HEV G + P Sbjct: 477 IVDGARPPPSPPALPPALPNPNEPPPPPPPAEALRADQPRHSLIHEV-GAQA------DP 529 Query: 216 GAARELQAGGSVPPDRLRRVGDHLDEPV 133 A QA V P+ R +H PV Sbjct: 530 AEANGAQALSPVLPNPNERADEHGHSPV 557
>ODP2_PSEAE (Q59638) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 547 Score = 33.5 bits (75), Expect = 0.47 Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 19/103 (18%) Frame = -2 Query: 492 VEEPDPGEGGVDVAEEREKLEV-EGDLTLHLAELVGVPRPHEAPVEVPAALAGPDERQR- 319 +E P P G V+ + EV GDL L L P E P PA A P Q+ Sbjct: 162 MEIPSPASGVVESVSIKVGDEVGTGDLILKLKVEGAAPAAEEQPAAAPAQAAAPAAEQKP 221 Query: 318 -----------------APERLLQLLHGVPRLRLLHEVRGVEL 241 AP R +H P +R+L GVEL Sbjct: 222 AAAAPAPAKADTPAPVGAPSRDGAKVHAGPAVRMLAREFGVEL 264
>MTRA_METTH (O27227) Tetrahydromethanopterin S-methyltransferase subunit A (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A) Length = 237 Score = 31.6 bits (70), Expect = 1.8 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%) Frame = -2 Query: 492 VEEPDPGEGGVDVAEEREKLEVEGDLTLHLAELVGVPRPHEAPVEVPAALAGPDERQR-A 316 VE+ P EG V + + GD +A + PVE AA+AGP + + Sbjct: 1 VEKKSPAEGWPVVNGDY----IVGDPESPVAATTLASHIEDVPVEAGAAIAGPCKTENLG 56 Query: 315 PERLLQLLHGVPRLRLL----HEVRG------VELVHQVPDHPGAARELQAGGSVP 178 E+++ L P +R L EV+G +E +HQ P + A G++P Sbjct: 57 IEKMIANLISNPNIRFLILCGSEVQGHITGQSIEALHQNGVDPDKRNIIGATGAIP 112
>MTRA_METTM (P80184) Tetrahydromethanopterin S-methyltransferase subunit A (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A) Length = 237 Score = 31.2 bits (69), Expect = 2.3 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%) Frame = -2 Query: 492 VEEPDPGEGGVDVAEEREKLEVEGDLTLHLAELVGVPRPHEAPVEVPAALAGPDERQR-A 316 VE+ P EG V + + GD +A + PVE AA+AGP + + Sbjct: 1 VEKKSPAEGWPVVNGDY----IVGDPESPVAATTLASHIEDIPVEAGAAIAGPCKTENLG 56 Query: 315 PERLLQLLHGVPRLRLL----HEVRG------VELVHQVPDHPGAARELQAGGSVP 178 E+++ L P +R L EV+G +E +HQ P + A G++P Sbjct: 57 IEKMIANLISNPNIRFLILCGSEVQGHITGQSIEALHQNGVDPDKRNIIGATGAIP 112
>ZBT7B_HUMAN (O15156) Zinc finger and BTB domain-containing protein 7B (Zinc| finger protein 67 homolog) (Zfp-67) (Zinc finger protein Th-POK) (T-helper-inducing POZ/Kruppel-like factor) (Kruppel-related zinc finger protein cKrox) (hcKrox) (Zinc finger and Length = 539 Score = 31.2 bits (69), Expect = 2.3 Identities = 35/130 (26%), Positives = 43/130 (33%), Gaps = 6/130 (4%) Frame = -2 Query: 492 VEEPDPGEGGVDVAEEREKLEVEGDLTLHLAELVGVPRPHEAPVEVPAALAGPD------ 331 +E P P E D R+ LE T GVP ++P +VP P Sbjct: 146 LEAPSPDED--DCERARQYLEAFATATAS-----GVPNGEDSPPQVPLPPPPPPPPRPVA 198 Query: 330 ERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQAGGSVPPDRLRRVGD 151 R R P + G L+ EV VP HP E + G V GD Sbjct: 199 RRSRKPRKAFLQTKGARANHLVPEVP------TVPAHPLTYEEEEVAGRVGSSGGSGPGD 252 Query: 150 HLDEPVGVHS 121 P G S Sbjct: 253 SYSPPTGTAS 262
>Y1897_METTH (O27919) UPF0244 protein MTH1897| Length = 182 Score = 31.2 bits (69), Expect = 2.3 Identities = 25/74 (33%), Positives = 34/74 (45%) Frame = -2 Query: 342 AGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQAGGSVPPDRLR 163 +G + RA E +L L++G EVRGVE+ VPD P E G +R R Sbjct: 14 SGNPVKVRATENVLGLIYGNV------EVRGVEVESGVPDQPVGLEETVRGA---VNRAR 64 Query: 162 RVGDHLDEPVGVHS 121 R + VG+ S Sbjct: 65 RAFRDCELSVGIES 78
>FDHE_PSEAE (Q9HV00) Protein fdhE homolog| Length = 309 Score = 30.8 bits (68), Expect = 3.0 Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Frame = -2 Query: 384 PRPHEAPVEVPAALAGP--DERQRAPERLLQLLHGVPRLRLLHEVRGV-ELVHQVPDHPG 214 P EA +P L P D R ERLLQL G P L V G+ L + D+P Sbjct: 8 PGQIEAAANIPPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPP 67 Query: 213 AARELQAGGSVPPDRLRRVGDH 148 A L P+RLR+ +H Sbjct: 68 ALAPLD------PERLRKSREH 83
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -2 Query: 384 PRPHEAPVEVPAALAGPDERQRAPE 310 PR EAP +VP AL P E +R PE Sbjct: 181 PREDEAPYDVPLALKPPAELERDPE 205
>GLMM_GLUOX (Q5FQB4) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 452 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -2 Query: 378 PHEAPVEVPAALAGPDERQRAPERLLQLLHGV-PRLRLLHEVRGVELVHQVPDH 220 P +P ++ AA A DER RL+ G P +R++ E + LVH+V DH Sbjct: 389 PMSSP-DLAAAKAWADERLAGSGRLVLRASGTEPLIRVMAEAQDEALVHEVVDH 441
>PACC_TRIRU (Q9C1A4) pH-response transcription factor pacC/RIM101| Length = 758 Score = 30.4 bits (67), Expect = 4.0 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = -2 Query: 489 EEPDPGEGGVDVAEEREKLEVEGDLTLHLAELVGVPRPHEAPVEVPA-----ALAGPDER 325 +EP +D A R ++++ D PH +P P A AGPD+R Sbjct: 558 DEPKLSSSVIDPALSRASVDMDEDAA-----------PHRSPSSTPTPTATTAAAGPDDR 606 Query: 324 QRAPERLLQLLHGVPRLRLLHEVR 253 Q A E+ V +RLL +R Sbjct: 607 QPAGEQ-----QWVENVRLLQRLR 625
>VID21_CANAL (Q5A119) Chromatin modification-related protein VID21| Length = 686 Score = 30.0 bits (66), Expect = 5.2 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 19/97 (19%) Frame = -2 Query: 492 VEEPDPGEGGVDVAEEREKLEVEGDLTLH------------LAELVGVPRPHEAPVEVPA 349 V EP P + E +L+ E D TLH + + V P P AP P Sbjct: 505 VTEPKPNSDRIPTPAELSRLKFERDKTLHENHINQQATRARMVQAVAKPAPAPAPAPPPP 564 Query: 348 ALAGPDERQRAP-------ERLLQLLHGVPRLRLLHE 259 P +R P E++ LL R+L + Sbjct: 565 QPPKPMKRPTTPNGTPLTNEQIQHLLQMQKHRRMLQQ 601
>SDC3_RAT (P33671) Syndecan-3 precursor (SYND3) (N-syndecan) (Neuroglycan)| Length = 442 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 3 RPPPPLGTLAGSAPPRLILNQTKIRNGSS 89 +P PPLGTL A P L L+ I +GSS Sbjct: 342 KPSPPLGTLPKGARPGLGLHDNAIDSGSS 370
>SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3)| Length = 442 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 3 RPPPPLGTLAGSAPPRLILNQTKIRNGSS 89 +P PPLGTL A P L L+ I +GSS Sbjct: 342 KPSPPLGTLPKGARPGLGLHDNAIDSGSS 370
>MURC_WOLPM (P61683) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 498 Score = 30.0 bits (66), Expect = 5.2 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Frame = -2 Query: 405 LAELVGVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVP 226 L+ +G+ + A + A+ + LL+ R L+ +++GV+L+ Sbjct: 308 LSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLIADIKGVKLIEDYA 367 Query: 225 DHPG-------AARELQAG---GSVPPDRLRRVGDHLDE 139 HP AAR + G G + P R R+ + DE Sbjct: 368 HHPNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDE 406
>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast| crisis-like 2) (Lbc's second cousin) Length = 920 Score = 29.3 bits (64), Expect = 8.8 Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Frame = -2 Query: 489 EEPDPGEGGVDVAEEREKLEVEGDLTLHLAELVGVPRPHEAPVEVPAALAGPDERQRAPE 310 E P+PG+ G R LE+E + ELV P + + +P + +RQ Sbjct: 372 ESPEPGDDG---EPGRSGLELEPEEPPGWRELV----PPDTLLSLPKSQV---KRQEVIS 421 Query: 309 RLL--QLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQAGGSVPPDRLRRVGDHLDEP 136 LL + H V LR+LH+ L +Q + GG P D L+ + LDE Sbjct: 422 ELLVTEAAH-VRMLRVLHD-----LFYQ---------PMADGGFFPLDELQNIFPSLDEL 466 Query: 135 VGVHS 121 + VHS Sbjct: 467 IEVHS 471
>BIOD_BACSU (P53558) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin| synthase) (DTB synthetase) (DTBS) Length = 231 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = -2 Query: 417 LTLHLAELVGVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGV--- 247 LT+ AE +G+P A + + PDE ++ +++ L GVP L + ++ V Sbjct: 154 LTVKYAESMGLPI---AGIIINGISDSPDEDEKTNPEMIERLCGVPILGVTPKLANVTKE 210 Query: 246 ELVHQVPDH 220 ++H V DH Sbjct: 211 TVLHMVKDH 219
>BIOD_BACNA (Q8KZM8) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin| synthase) (DTB synthetase) (DTBS) Length = 231 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = -2 Query: 417 LTLHLAELVGVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGV--- 247 LT+ AE +G+P A + + PDE ++ +++ L GVP L + ++ V Sbjct: 154 LTVKYAESMGLPI---AGIIINGISDSPDEDEKTNPEMIERLCGVPILGVTPKLANVTKE 210 Query: 246 ELVHQVPDH 220 ++H V DH Sbjct: 211 TVLHMVKDH 219
>DJLA_VIBCH (Q9KUR8) DnaJ-like protein djlA| Length = 284 Score = 29.3 bits (64), Expect = 8.8 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 12/79 (15%) Frame = +1 Query: 199 QLARRARM------------IGDLMHQLHAAHLMQQPETRNPMEQLEETLRRALSLVRSC 342 QL RR RM G Q H+ QQP +R+ + E L +S S Sbjct: 174 QLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLADAYEVL--GVSESASA 231 Query: 343 QRRGYLYRCFMGARHADEL 399 Q YR M H D+L Sbjct: 232 QEVKRAYRKLMNEHHPDKL 250
>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle| Length = 1935 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Frame = +1 Query: 145 KMIADAA---QTVRRNRATCLQLARRAR----MIGDLMHQLHAAHLMQQPETRNPMEQLE 303 K I DAA + +++ + T L R + + DL H+L A + + +++LE Sbjct: 1758 KAITDAAMMAEELKKEQDTSAHLERMKKNLEVTVKDLQHRLDEAESLAMKGGKKQLQKLE 1817 Query: 304 ETLRRALSLVRSCQRRG 354 +R + V + QRRG Sbjct: 1818 SRVRELEAEVEAEQRRG 1834 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,695,726 Number of Sequences: 219361 Number of extensions: 1495345 Number of successful extensions: 6459 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6448 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
