ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7h11 |
|---|---|
| Clone Library Name | barley_pub |
>AROC_BARHE (Q6G4D4) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 366 Score = 31.6 bits (70), Expect = 0.53 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -2 Query: 163 SLSCATNPSSPGITLVSQAVTSYLNRPRATLSSXCARRREL 41 +L C + PGIT + SYLN+ + S +RREL Sbjct: 22 ALGCVIDGCPPGITFTLSDIQSYLNKRKPGQSKYTTQRREL 62
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 30.4 bits (67), Expect = 1.2 Identities = 24/67 (35%), Positives = 31/67 (46%) Frame = +2 Query: 20 APY*VLPQFSPPRTXGGQGSPRPIQI*RNSLRDQGDSWRAWVCCTA*RRPPPQEAPNRVP 199 AP +P SPPR +P P+ R S+ + ++R W T PPP AP P Sbjct: 207 APQEPVPVSSPPRVPTPPSTPVPLPEKRRSILRE-PTFR-WTSLTR-ELPPPPPAPPPAP 263 Query: 200 C*PCAPA 220 P APA Sbjct: 264 SPPPAPA 270
>UL34_VZVD (P09280) Virion gene 24 protein| Length = 269 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = -2 Query: 247 VKLNLAESNGWSTRSTRNSVGRFLRWRPSLSCATNPSSPGITLVSQA 107 +KL ++ + + T N++ ++RWRPS SP ++ Q+ Sbjct: 178 IKLMARATDAYMYKETGNNLDEYIRWRPSFRSPPENGSPNTSVQMQS 224
>CP8B1_RABIT (O02766) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVIIIB1)| (7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase) (Sterol 12-alpha-hydroxylase) (7-alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase) Length = 499 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 186 PTEFRVDRVLQPFDSAKFNFTKVGQEEVLFRFENGGGDS 302 PT F+ DR L P S K +F K GQ+ + G G S Sbjct: 398 PTTFKYDRFLNPNGSRKVDFYKAGQKIHHYTMPWGSGVS 436
>AROC_BUCBP (Q89AX9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 355 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%) Frame = -2 Query: 196 NSVGRFLRWR-------PSLSCATNPSSPGITLVSQAVTSYLNRPRATLSSXCARRRELR 38 NS+G+ R P L C + + PG+ + L+R R S +RREL Sbjct: 4 NSIGKLFRVTTFGESHGPKLGCIIDGTPPGLEISENDFQKELDRRRPGTSKYTTQRRELD 63 Query: 37 KNSV 26 K ++ Sbjct: 64 KITI 67
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/73 (26%), Positives = 31/73 (42%) Frame = -2 Query: 259 WPTLVKLNLAESNGWSTRSTRNSVGRFLRWRPSLSCATNPSSPGITLVSQAVTSYLNRPR 80 W TL L+L N RN + + W +L NPS P L+ + S + + + Sbjct: 2713 WETLEPLHLEAENQIKKCDIRNKMKETILWAKNLLGELNPSIP---LLPDDILSQIRKCK 2769 Query: 79 ATLSSXCARRREL 41 T AR++ + Sbjct: 2770 VTHDGILARQQSV 2782
>AROC_BRUSU (P63608) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 364 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -2 Query: 202 TRNSVGRFLR---WRPS----LSCATNPSSPGITLVSQAVTSYLNRPRATLSSXCARRRE 44 + NS G R W S L C + PGIT + S+L++ + S +RRE Sbjct: 2 SHNSFGHLFRVTTWGESHGLALGCVVDGCPPGITFTEAEIQSFLDKRKPGQSKYTTQRRE 61
>AROC_BRUME (P63607) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 364 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -2 Query: 202 TRNSVGRFLR---WRPS----LSCATNPSSPGITLVSQAVTSYLNRPRATLSSXCARRRE 44 + NS G R W S L C + PGIT + S+L++ + S +RRE Sbjct: 2 SHNSFGHLFRVTTWGESHGLALGCVVDGCPPGITFTEAEIQSFLDKRKPGQSKYTTQRRE 61
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 166 PSLSCATNPSSPGITLVSQAVTSYLNRPRATLS 68 P+ NPSSP TL + A S+ N+P A ++ Sbjct: 305 PAADINQNPSSPNATLTTAASNSHHNQPTADVN 337
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 28.1 bits (61), Expect = 5.9 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +3 Query: 18 ELPTEFFLNSLLLAQXEDRV----ARGLFRYDVTACETKVIPGELGFVAQLNEGRHLKK 182 E+P ++FL + Q +DRV L R + TK I G L VA L E R K+ Sbjct: 1094 EMPAQYFLPGKAIVQLDDRVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKE 1152
>CP8B1_HUMAN (Q9UNU6) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVIIIB1)| (7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase) (Sterol 12-alpha-hydroxylase) (7-alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase) Length = 501 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 186 PTEFRVDRVLQPFDSAKFNFTKVGQEEVLFRFENGGGDS 302 PT F+ DR L P S K +F K G++ + G G S Sbjct: 400 PTVFKYDRFLNPNGSRKVDFFKTGKKIHHYTMPWGSGVS 438 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,001,922 Number of Sequences: 219361 Number of extensions: 730690 Number of successful extensions: 1973 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1972 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
