ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal6p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467308.1| Oryza sativa (japonica cultivar-group), mRNA 553 e-154
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
3dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
4gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete se... 44 0.56
5dbj|AP006701.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.56
6emb|AL808122.5| Mouse DNA sequence from clone RP23-445J18 on chr... 44 0.56
7gb|AC123703.8| Mus musculus chromosome 3, clone RP23-345N18, com... 42 2.2
8gb|AC013448.7| Homo sapiens BAC clone RP11-551D18 from 2, comple... 42 2.2
9gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosom... 40 8.8
10emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chro... 40 8.8
11gb|AC140951.1| Pan troglodytes BAC clone RP43-60K3 from 7, compl... 40 8.8
12gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, com... 40 8.8
13emb|BX571659.1| Wolinella succinogenes, complete genome; segment... 40 8.8
14emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 8.8
15emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complet... 40 8.8
16emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 40 8.8
17emb|AL766846.1|SAG766846 Streptococcus agalactiae NEM316 complet... 40 8.8
18emb|AL766845.1|SAG766845 Streptococcus agalactiae NEM316 complet... 40 8.8
19emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 i... 40 8.8
20emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on ch... 40 8.8
21dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 40 8.8
22emb|BX324154.5| Zebrafish DNA sequence from clone DKEY-65L24 in ... 40 8.8
23gb|AC083872.2|AC083872 Homo sapiens chromosome 7 clone RP11-639H... 40 8.8
24gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 8.8 
>ref|XM_467308.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2319

 Score =  553 bits (279), Expect = e-154
 Identities = 442/495 (89%), Gaps = 1/495 (0%)
 Strand = Plus / Plus

                                                                        
Query: 145  ttgcaagctgtattgccatttgacctctttttggatcggagaaggcgctctgacttcctt 204
            ||||||||||||||||||||||||||| |||||||||||| ||| || ||  ||||||| 
Sbjct: 850  ttgcaagctgtattgccatttgacctccttttggatcggaaaagacgatcctacttccta 909

                                                                        
Query: 205  aataatctccaaagtagttctgaagcatccatacgaaagcctaaaattgttgatgacgct 264
            |||||||||||  | ||||||||| ||||  ||| ||||||||| |||||||||||||||
Sbjct: 910  aataatctccatggcagttctgaaacatctgtaccaaagcctaagattgttgatgacgct 969

                                                                        
Query: 265  gctattgcattaacatctttagcagcttgtgaggaagaacttcagcaggaattgcttata 324
            ||| |||||||| ||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct: 970  gctgttgcattagcatctttagcagcttgtgaggaagaacttgaacaagaattacttata 1029

                                                                        
Query: 325  acaacgtcgtatatacctgggatggaagttaggctgtcaagcagactcaagagcttatat 384
             | || ||||||||||||||||||||||| |   ||||||| |||||||||||||| |||
Sbjct: 1030 tcgacatcgtatatacctgggatggaagtaactttgtcaagtagactcaagagcttgtat 1089

                                                                        
Query: 385  agcatctactgtaagatgaaaaggaaacatgtaggcattagacaagtatacgatgctcgt 444
            ||||| |||||||||||||||||||||||||||||||||| |||| | || |||||||||
Sbjct: 1090 agcatgtactgtaagatgaaaaggaaacatgtaggcattaaacaaatctatgatgctcgt 1149

                                                                        
Query: 445  gcgttgagggtgattgttggagacaaaaacggtgcattgcatggacctgcagtcaggagt 504
            || |||||||||||  |||||||||||||||||||||||||||||||||| |||| || |
Sbjct: 1150 gcattgagggtgatcattggagacaaaaacggtgcattgcatggacctgctgtcaagaat 1209

                                                                        
Query: 505  tgctacaacatccttgacatagtacacaggctatggactccaatcgatggggagtttgat 564
            ||||||| | ||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 1210 tgctacagcgtccttgatatagtaaacaggctatggactccaattgatggggagtttgat 1269

                                                                        
Query: 565  gactatattatcaaccctaagggcagcggttaccaatcactccataccagcagttcaggc 624
            ||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||||||
Sbjct: 1270 gactacattatcaaccctaagggtagtggttaccaatcactccata-cggcagttcaggc 1328

                           
Query: 625  atccgatagctcacc 639
            ||| |||| ||||||
Sbjct: 1329 atcggataactcacc 1343
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  190 bits (96), Expect = 4e-45
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                            
Query: 145      ttgcaagctgtattgccatttgacctctttttggatcggagaaggcgctctgacttcctt 204
                ||||||||||||||||||||||||||| |||||||||||| ||| || ||  ||||||| 
Sbjct: 28782043 ttgcaagctgtattgccatttgacctccttttggatcggaaaagacgatcctacttccta 28782102

                                                                            
Query: 205      aataatctccaaagtagttctgaagcatccatacgaaagcctaaaattgttgatgacgct 264
                |||||||||||  | ||||||||| ||||  ||| ||||||||| |||||||||||||||
Sbjct: 28782103 aataatctccatggcagttctgaaacatctgtaccaaagcctaagattgttgatgacgct 28782162

                                                                            
Query: 265      gctattgcattaacatctttagcagcttgtgaggaagaacttcagcaggaattgcttata 324
                ||| |||||||| ||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct: 28782163 gctgttgcattagcatctttagcagcttgtgaggaagaacttgaacaagaattacttata 28782222



 Score =  161 bits (81), Expect = 3e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                            
Query: 398      agatgaaaaggaaacatgtaggcattagacaagtatacgatgctcgtgcgttgagggtga 457
                ||||||||||||||||||||||||||| |||| | || ||||||||||| ||||||||||
Sbjct: 28782591 agatgaaaaggaaacatgtaggcattaaacaaatctatgatgctcgtgcattgagggtga 28782650

                                                                            
Query: 458      ttgttggagacaaaaacggtgcattgcatggacctgcagtcaggagttgctacaacatcc 517
                |  |||||||||||||||||||||||||||||||||| |||| || |||||||| | |||
Sbjct: 28782651 tcattggagacaaaaacggtgcattgcatggacctgctgtcaagaattgctacagcgtcc 28782710

                                 
Query: 518      ttgacatagtacacagg 534
                |||| |||||| |||||
Sbjct: 28782711 ttgatatagtaaacagg 28782727



 Score =  107 bits (54), Expect = 4e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                            
Query: 531      caggctatggactccaatcgatggggagtttgatgactatattatcaaccctaagggcag 590
                |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 28783020 caggctatggactccaattgatggggagtttgatgactacattatcaaccctaagggtag 28783079

                          
Query: 591      cggttaccaa 600
                 |||||||||
Sbjct: 28783080 tggttaccaa 28783089



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                            
Query: 333      gtatatacctgggatggaagttaggctgtcaagcagactcaagagcttatatagcatcta 392
                ||||||||||||||||||||| |   ||||||| |||||||||||||| |||||||| ||
Sbjct: 28782347 gtatatacctgggatggaagtaactttgtcaagtagactcaagagcttgtatagcatgta 28782406

                       
Query: 393      ctgtaag 399
                |||||||
Sbjct: 28782407 ctgtaag 28782413



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 21       taaaagcatgagaaggtcatcaattagaagtg 52
                ||||||||  |||||||||||||| |||||||
Sbjct: 28781688 taaaagcacaagaaggtcatcaataagaagtg 28781719
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score =  190 bits (96), Expect = 4e-45
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                         
Query: 145   ttgcaagctgtattgccatttgacctctttttggatcggagaaggcgctctgacttcctt 204
             ||||||||||||||||||||||||||| |||||||||||| ||| || ||  ||||||| 
Sbjct: 98616 ttgcaagctgtattgccatttgacctccttttggatcggaaaagacgatcctacttccta 98675

                                                                         
Query: 205   aataatctccaaagtagttctgaagcatccatacgaaagcctaaaattgttgatgacgct 264
             |||||||||||  | ||||||||| ||||  ||| ||||||||| |||||||||||||||
Sbjct: 98676 aataatctccatggcagttctgaaacatctgtaccaaagcctaagattgttgatgacgct 98735

                                                                         
Query: 265   gctattgcattaacatctttagcagcttgtgaggaagaacttcagcaggaattgcttata 324
             ||| |||||||| ||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct: 98736 gctgttgcattagcatctttagcagcttgtgaggaagaacttgaacaagaattacttata 98795



 Score =  161 bits (81), Expect = 3e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                         
Query: 398   agatgaaaaggaaacatgtaggcattagacaagtatacgatgctcgtgcgttgagggtga 457
             ||||||||||||||||||||||||||| |||| | || ||||||||||| ||||||||||
Sbjct: 99164 agatgaaaaggaaacatgtaggcattaaacaaatctatgatgctcgtgcattgagggtga 99223

                                                                         
Query: 458   ttgttggagacaaaaacggtgcattgcatggacctgcagtcaggagttgctacaacatcc 517
             |  |||||||||||||||||||||||||||||||||| |||| || |||||||| | |||
Sbjct: 99224 tcattggagacaaaaacggtgcattgcatggacctgctgtcaagaattgctacagcgtcc 99283

                              
Query: 518   ttgacatagtacacagg 534
             |||| |||||| |||||
Sbjct: 99284 ttgatatagtaaacagg 99300



 Score =  107 bits (54), Expect = 4e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                         
Query: 531   caggctatggactccaatcgatggggagtttgatgactatattatcaaccctaagggcag 590
             |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 99593 caggctatggactccaattgatggggagtttgatgactacattatcaaccctaagggtag 99652

                       
Query: 591   cggttaccaa 600
              |||||||||
Sbjct: 99653 tggttaccaa 99662



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                         
Query: 333   gtatatacctgggatggaagttaggctgtcaagcagactcaagagcttatatagcatcta 392
             ||||||||||||||||||||| |   ||||||| |||||||||||||| |||||||| ||
Sbjct: 98920 gtatatacctgggatggaagtaactttgtcaagtagactcaagagcttgtatagcatgta 98979

                    
Query: 393   ctgtaag 399
             |||||||
Sbjct: 98980 ctgtaag 98986



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 21    taaaagcatgagaaggtcatcaattagaagtg 52
             ||||||||  |||||||||||||| |||||||
Sbjct: 98261 taaaagcacaagaaggtcatcaataagaagtg 98292
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>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
          Length = 117113

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 428  aagtatacgatgctcgtgcgttgagggtgattgttggagacaaaaacggtgcattgcatg 487
            ||||||| ||||| ||||| || || ||  |||| ||||||||||| || || || ||||
Sbjct: 6119 aagtatatgatgcacgtgcattaagagtagttgtaggagacaaaaatggagctttacatg 6060

                      
Query: 488  gacctgcagt 497
            ||||||||||
Sbjct: 6059 gacctgcagt 6050
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>dbj|AP006701.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08P04, TM0587,
             complete sequence
          Length = 110885

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 532   aggctatggactccaatcgatggggagtttgatgacta 569
             ||||| ||||||||||| ||||| || |||||||||||
Sbjct: 73097 aggctttggactccaatagatggtgaatttgatgacta 73134
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>emb|AL808122.5| Mouse DNA sequence from clone RP23-445J18 on chromosome X, complete
             sequence
          Length = 92831

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 292   tgtgaggaagaacttcagcagg 313
             ||||||||||||||||||||||
Sbjct: 43121 tgtgaggaagaacttcagcagg 43100
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>gb|AC123703.8| Mus musculus chromosome 3, clone RP23-345N18, complete sequence
          Length = 197442

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 297    ggaagaacttcagcaggaatt 317
              |||||||||||||||||||||
Sbjct: 170475 ggaagaacttcagcaggaatt 170455
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>gb|AC013448.7| Homo sapiens BAC clone RP11-551D18 from 2, complete sequence
          Length = 129553

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 447   gttgagggtgattgttggagacaaa 471
             ||||||||| |||||||||||||||
Sbjct: 22775 gttgagggtaattgttggagacaaa 22799
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>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence
          Length = 191036

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    aagaacttcagcaggaattg 318
              ||||||||||||||||||||
Sbjct: 163836 aagaacttcagcaggaattg 163855
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>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete
              sequence
          Length = 220233

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    aagaacttcagcaggaattg 318
              ||||||||||||||||||||
Sbjct: 145735 aagaacttcagcaggaattg 145716
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>gb|AC140951.1| Pan troglodytes BAC clone RP43-60K3 from 7, complete sequence
          Length = 165269

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aaaagcatgagaaggtcatc 41
             ||||||||||||||||||||
Sbjct: 41389 aaaagcatgagaaggtcatc 41370
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>gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, complete sequence
          Length = 164548

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 340   cctgggatggaagttaggctgtca 363
             |||||||||||||| |||||||||
Sbjct: 92619 cctgggatggaagtcaggctgtca 92642
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>emb|BX571659.1| Wolinella succinogenes, complete genome; segment 3/7
          Length = 349970

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    catttgacctctttttggat 180
              ||||||||||||||||||||
Sbjct: 153237 catttgacctctttttggat 153218
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>emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 6/10
          Length = 298050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    gaaggcgctctgacttcctt 204
              ||||||||||||||||||||
Sbjct: 102847 gaaggcgctctgacttcctt 102866
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>emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complete genome, segment 7
          Length = 128050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 264  tgctattgcattaacatctttagcagcttgtg 295
            |||| ||||| ||||||||||| |||||||||
Sbjct: 5080 tgcttttgcagtaacatctttaacagcttgtg 5111
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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 264   tgctattgcattaacatctttagcagcttgtg 295
             |||| ||||| ||||||||||| |||||||||
Sbjct: 80039 tgcttttgcagtaacatctttaacagcttgtg 80070
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>emb|AL766846.1|SAG766846 Streptococcus agalactiae NEM316 complete genome, segment 4
          Length = 224050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 264    tgctattgcattaacatctttagcagcttgtg 295
              |||| ||||| ||||||||||| |||||||||
Sbjct: 178878 tgcttttgcagtaacatctttaacagcttgtg 178847
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>emb|AL766845.1|SAG766845 Streptococcus agalactiae NEM316 complete genome, segment 3
          Length = 178050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 264   tgctattgcattaacatctttagcagcttgtg 295
             |||| ||||| ||||||||||| |||||||||
Sbjct: 30811 tgcttttgcagtaacatctttaacagcttgtg 30780
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>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13,
            complete sequence
          Length = 219918

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  gtaagatgaaaaggaaacat 414
            ||||||||||||||||||||
Sbjct: 1477 gtaagatgaaaaggaaacat 1496
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>emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on chromosome 13 Contains the
              gene for the ortholog of rat and human ubiquinol-cytochrome
              c reductase, Rieske iron-sulfur polypeptide 1 UQCRFS1, a
              novel gene and a CpG island, complete sequence
          Length = 194065

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    tatacctgggatggaagtta 355
              ||||||||||||||||||||
Sbjct: 176161 tatacctgggatggaagtta 176180
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>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    atctttagcagcttgtgagg 298
              ||||||||||||||||||||
Sbjct: 674503 atctttagcagcttgtgagg 674522
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>emb|BX324154.5| Zebrafish DNA sequence from clone DKEY-65L24 in linkage group 5, complete
              sequence
          Length = 148743

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    caagaacaatcaaatatgga 137
              ||||||||||||||||||||
Sbjct: 102411 caagaacaatcaaatatgga 102392
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>gb|AC083872.2|AC083872 Homo sapiens chromosome 7 clone RP11-639H21, complete sequence
          Length = 186609

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   ttatatagcatctactgtaa 398
             ||||||||||||||||||||
Sbjct: 81221 ttatatagcatctactgtaa 81202
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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tattgcattaacatctttag 286
              ||||||||||||||||||||
Sbjct: 992296 tattgcattaacatctttag 992315


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,201,231
Number of Sequences: 3902068
Number of extensions: 5201231
Number of successful extensions: 94513
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94390
Number of HSP's gapped (non-prelim): 122
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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