ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal6o24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111770.1| Zea mays CL63033_1 mRNA sequence Length = 540 Score = 176 bits (89), Expect = 6e-41 Identities = 181/211 (85%), Gaps = 3/211 (1%) Strand = Plus / Plus Query: 394 atgaccttaagccccttggcgggagtgtactactggacaaaagcgtcgaggaaagaggag 453 |||||| | |||||||||||||||| |||||||||||| |||||||| |||||||| ||| Sbjct: 35 atgaccctgagccccttggcgggagcgtactactggacgaaagcgtcaaggaaagaagag 94 Query: 454 atcaaggtgaagatggtcttgtccgatgacgggaacaatgtgtccgagattctggtgcgg 513 |||||||| |||||| || | ||||||||||||||| ||||||||||| || |||| | Sbjct: 95 atcaaggtcaagatgatcctatccgatgacgggaac---gtgtccgagatccttgtgcag 151 Query: 514 ggcgacgatgtgcaggtcgagcagatgaggagggagctcaagatgagcgagaaggggatg 573 ||||| || || ||||| ||||||||||||| ||| |||||| | ||||||||||||||| Sbjct: 152 ggcgatgacgtccaggttgagcagatgaggaaggacctcaagttcagcgagaaggggatg 211 Query: 574 atatacgtgaaggggatattcgagacatgac 604 | || |||||||| || || |||||||||| Sbjct: 212 gtctatgtgaagggcatctttgagacatgac 242
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 165 bits (83), Expect = 2e-37 Identities = 95/99 (95%) Strand = Plus / Plus Query: 37 acggggtactcgcaggccagctactacacctcgctggggctcttcgtgctctccgtcccg 96 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 6509 acggggtactcgcaggcgagctactacacgtcgctggggctcttcgtgctctccgtccct 6568 Query: 97 gggctctggtcgctcatcaagcgctccgtcaagtccaag 135 || |||||||||||||||||||||||||||||||||||| Sbjct: 6569 ggcctctggtcgctcatcaagcgctccgtcaagtccaag 6607 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 307 accttctgcaccgtcattagcctggggagcgtcgggcttgttctgtcaatcgcggtccca 366 |||||||||||| ||||||||| || |||||||| |||||||| ||||| || ||||| Sbjct: 8083 accttctgcacctgcattagccttggcagcgtcggtcttgttctatcaattgcagtcccg 8142 Query: 367 gaaggcggcaacaactggttctggcttatgaccttaagccccttggcg 414 || || ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8143 gagggtggcaacaactggttctggcttatgaccttaagcccattggcg 8190 Score = 113 bits (57), Expect = 7e-22 Identities = 152/183 (83%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 421 tactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatggtcttgtccgat 480 |||||||||||||| || || || ||||| ||||||||||| || ||| | || || ||| Sbjct: 8281 tactactggacaaaggcatcaagaaaagaagagatcaaggtcaaaatgattttatcggat 8340 Query: 481 gacgggaacaatgtgtccgagattctggtgcggggcgacgatgtgcaggtcgagcagatg 540 |||||||| ||| ||||| ||||| |||||||| || ||||| || || ||||||||| Sbjct: 8341 gacgggaa---tgtatccgaaattcttgtgcggggtgatgatgtccaagtggagcagatg 8397 Query: 541 aggagggagctcaagatgagcgagaaggggatgatatacgtgaaggggatattcgagaca 600 |||| |||||||||| | || ||||||||||||||||| || |||||||| || || ||| Sbjct: 8398 aggaaggagctcaagttcagtgagaaggggatgatatatgttaaggggatctttgaaaca 8457 Query: 601 tga 603 ||| Sbjct: 8458 tga 8460 Score = 87.7 bits (44), Expect = 4e-14 Identities = 104/124 (83%) Strand = Plus / Plus Query: 137 ttgtgcagaagacgttcgtcagggaggaaggacagccgacagcgccgagcctggtggccg 196 ||||||||||||| ||||||| ||||||||| ||| ||| ||||||| || |||||| | Sbjct: 7355 ttgtgcagaagacattcgtcaaggaggaagggcagacgatggcgccgaaccaggtggctg 7414 Query: 197 gggagatcctgtccttcttcacgcgcaacagtttttccgtctctgaccgtggtgaggtca 256 |||||||||| || |||||||| || |||| || || ||||||||||||| ||||| | Sbjct: 7415 gggagatcctctcgttcttcacccgtaacaacttcaccatctctgaccgtggcgaggtta 7474 Query: 257 tcac 260 |||| Sbjct: 7475 tcac 7478
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 165 bits (83), Expect = 2e-37 Identities = 95/99 (95%) Strand = Plus / Plus Query: 37 acggggtactcgcaggccagctactacacctcgctggggctcttcgtgctctccgtcccg 96 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 18427194 acggggtactcgcaggcgagctactacacgtcgctggggctcttcgtgctctccgtccct 18427253 Query: 97 gggctctggtcgctcatcaagcgctccgtcaagtccaag 135 || |||||||||||||||||||||||||||||||||||| Sbjct: 18427254 ggcctctggtcgctcatcaagcgctccgtcaagtccaag 18427292 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 307 accttctgcaccgtcattagcctggggagcgtcgggcttgttctgtcaatcgcggtccca 366 |||||||||||| ||||||||| || |||||||| |||||||| ||||| || ||||| Sbjct: 18428768 accttctgcacctgcattagccttggcagcgtcggtcttgttctatcaattgcagtcccg 18428827 Query: 367 gaaggcggcaacaactggttctggcttatgaccttaagccccttggcg 414 || || ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18428828 gagggtggcaacaactggttctggcttatgaccttaagcccattggcg 18428875 Score = 113 bits (57), Expect = 7e-22 Identities = 152/183 (83%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 421 tactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatggtcttgtccgat 480 |||||||||||||| || || || ||||| ||||||||||| || ||| | || || ||| Sbjct: 18428966 tactactggacaaaggcatcaagaaaagaagagatcaaggtcaaaatgattttatcggat 18429025 Query: 481 gacgggaacaatgtgtccgagattctggtgcggggcgacgatgtgcaggtcgagcagatg 540 |||||||| ||| ||||| ||||| |||||||| || ||||| || || ||||||||| Sbjct: 18429026 gacgggaa---tgtatccgaaattcttgtgcggggtgatgatgtccaagtggagcagatg 18429082 Query: 541 aggagggagctcaagatgagcgagaaggggatgatatacgtgaaggggatattcgagaca 600 |||| |||||||||| | || ||||||||||||||||| || |||||||| || || ||| Sbjct: 18429083 aggaaggagctcaagttcagtgagaaggggatgatatatgttaaggggatctttgaaaca 18429142 Query: 601 tga 603 ||| Sbjct: 18429143 tga 18429145 Score = 87.7 bits (44), Expect = 4e-14 Identities = 104/124 (83%) Strand = Plus / Plus Query: 137 ttgtgcagaagacgttcgtcagggaggaaggacagccgacagcgccgagcctggtggccg 196 ||||||||||||| ||||||| ||||||||| ||| ||| ||||||| || |||||| | Sbjct: 18428040 ttgtgcagaagacattcgtcaaggaggaagggcagacgatggcgccgaaccaggtggctg 18428099 Query: 197 gggagatcctgtccttcttcacgcgcaacagtttttccgtctctgaccgtggtgaggtca 256 |||||||||| || |||||||| || |||| || || ||||||||||||| ||||| | Sbjct: 18428100 gggagatcctctcgttcttcacccgtaacaacttcaccatctctgaccgtggcgaggtta 18428159 Query: 257 tcac 260 |||| Sbjct: 18428160 tcac 18428163
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 165 bits (83), Expect = 2e-37 Identities = 95/99 (95%) Strand = Plus / Plus Query: 37 acggggtactcgcaggccagctactacacctcgctggggctcttcgtgctctccgtcccg 96 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 18586595 acggggtactcgcaggcgagctactacacgtcgctggggctcttcgtgctctccgtccct 18586654 Query: 97 gggctctggtcgctcatcaagcgctccgtcaagtccaag 135 || |||||||||||||||||||||||||||||||||||| Sbjct: 18586655 ggcctctggtcgctcatcaagcgctccgtcaagtccaag 18586693 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 307 accttctgcaccgtcattagcctggggagcgtcgggcttgttctgtcaatcgcggtccca 366 |||||||||||| ||||||||| || |||||||| |||||||| ||||| || ||||| Sbjct: 18588169 accttctgcacctgcattagccttggcagcgtcggtcttgttctatcaattgcagtcccg 18588228 Query: 367 gaaggcggcaacaactggttctggcttatgaccttaagccccttggcg 414 || || ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18588229 gagggtggcaacaactggttctggcttatgaccttaagcccattggcg 18588276 Score = 113 bits (57), Expect = 7e-22 Identities = 152/183 (83%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 421 tactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatggtcttgtccgat 480 |||||||||||||| || || || ||||| ||||||||||| || ||| | || || ||| Sbjct: 18588367 tactactggacaaaggcatcaagaaaagaagagatcaaggtcaaaatgattttatcggat 18588426 Query: 481 gacgggaacaatgtgtccgagattctggtgcggggcgacgatgtgcaggtcgagcagatg 540 |||||||| ||| ||||| ||||| |||||||| || ||||| || || ||||||||| Sbjct: 18588427 gacgggaa---tgtatccgaaattcttgtgcggggtgatgatgtccaagtggagcagatg 18588483 Query: 541 aggagggagctcaagatgagcgagaaggggatgatatacgtgaaggggatattcgagaca 600 |||| |||||||||| | || ||||||||||||||||| || |||||||| || || ||| Sbjct: 18588484 aggaaggagctcaagttcagtgagaaggggatgatatatgttaaggggatctttgaaaca 18588543 Query: 601 tga 603 ||| Sbjct: 18588544 tga 18588546 Score = 87.7 bits (44), Expect = 4e-14 Identities = 104/124 (83%) Strand = Plus / Plus Query: 137 ttgtgcagaagacgttcgtcagggaggaaggacagccgacagcgccgagcctggtggccg 196 ||||||||||||| ||||||| ||||||||| ||| ||| ||||||| || |||||| | Sbjct: 18587441 ttgtgcagaagacattcgtcaaggaggaagggcagacgatggcgccgaaccaggtggctg 18587500 Query: 197 gggagatcctgtccttcttcacgcgcaacagtttttccgtctctgaccgtggtgaggtca 256 |||||||||| || |||||||| || |||| || || ||||||||||||| ||||| | Sbjct: 18587501 gggagatcctctcgttcttcacccgtaacaacttcaccatctctgaccgtggcgaggtta 18587560 Query: 257 tcac 260 |||| Sbjct: 18587561 tcac 18587564
>ref|NM_113582.2| Arabidopsis thaliana unknown protein AT3G26710 mRNA, complete cds Length = 972 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 415 ggagtgtactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatg 468 |||||||| ||||||| ||| |||||||||||||||||||| || ||||||||| Sbjct: 637 ggagtgtattactggaaaaaggcgtcgaggaaagaggagataaaagtgaagatg 690
>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence Length = 81493 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 415 ggagtgtactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatg 468 |||||||| ||||||| ||| |||||||||||||||||||| || ||||||||| Sbjct: 66601 ggagtgtattactggaaaaaggcgtcgaggaaagaggagataaaagtgaagatg 66654
>gb|AY140025.1| Arabidopsis thaliana expressed protein (At3g26710) mRNA, complete cds Length = 908 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 415 ggagtgtactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatg 468 |||||||| ||||||| ||| |||||||||||||||||||| || ||||||||| Sbjct: 638 ggagtgtattactggaaaaaggcgtcgaggaaagaggagataaaagtgaagatg 691
>gb|BT006294.1| Arabidopsis thaliana At3g26710 mRNA, complete cds Length = 804 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 415 ggagtgtactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatg 468 |||||||| ||||||| ||| |||||||||||||||||||| || ||||||||| Sbjct: 613 ggagtgtattactggaaaaaggcgtcgaggaaagaggagataaaagtgaagatg 666
>gb|AY087129.1| Arabidopsis thaliana clone 32010 mRNA, complete sequence Length = 918 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 415 ggagtgtactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatg 468 |||||||| ||||||| ||| |||||||||||||||||||| || ||||||||| Sbjct: 632 ggagtgtattactggaaaaaggcgtcgaggaaagaggagataaaagtgaagatg 685
>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15 Length = 43481 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 415 ggagtgtactactggacaaaagcgtcgaggaaagaggagatcaaggtgaagatg 468 |||||||| ||||||| ||| |||||||||||||||||||| || ||||||||| Sbjct: 24363 ggagtgtattactggaaaaaggcgtcgaggaaagaggagataaaagtgaagatg 24416
>ref|NM_125885.2| Arabidopsis thaliana unknown protein AT5G64870 mRNA, complete cds Length = 1754 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 aaagaggagatcaaggtgaaga 466 |||||||||||||||||||||| Sbjct: 743 aaagaggagatcaaggtgaaga 764
>ref|NM_190968.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 234 Score = 44.1 bits (22), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 ggcggtggaggcgacggggnacggg 41 ||||||||||||||||||| ||||| Sbjct: 148 ggcggtggaggcgacgggggacggg 172
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 ggcggtggaggcgacggggnacggg 41 ||||||||||||||||||| ||||| Sbjct: 34087449 ggcggtggaggcgacgggggacggg 34087473
>emb|BX830484.1|CNS0A1EH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZF09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1586 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 aaagaggagatcaaggtgaaga 466 |||||||||||||||||||||| Sbjct: 721 aaagaggagatcaaggtgaaga 742
>emb|BX830969.1|CNS0A0PW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1673 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 aaagaggagatcaaggtgaaga 466 |||||||||||||||||||||| Sbjct: 721 aaagaggagatcaaggtgaaga 742
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034E02 Length = 165497 Score = 44.1 bits (22), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 ggcggtggaggcgacggggnacggg 41 ||||||||||||||||||| ||||| Sbjct: 83927 ggcggtggaggcgacgggggacggg 83951
>gb|AY085257.1| Arabidopsis thaliana clone 142026 mRNA, complete sequence Length = 1753 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 aaagaggagatcaaggtgaaga 466 |||||||||||||||||||||| Sbjct: 743 aaagaggagatcaaggtgaaga 764
>dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXK3 Length = 81494 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 445 aaagaggagatcaaggtgaaga 466 |||||||||||||||||||||| Sbjct: 27884 aaagaggagatcaaggtgaaga 27863
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence Length = 143392 Score = 42.1 bits (21), Expect = 2.1 Identities = 66/81 (81%) Strand = Plus / Plus Query: 55 agctactacacctcgctggggctcttcgtgctctccgtcccggggctctggtcgctcatc 114 ||||||||||| || ||||| ||||| || |||| || || || |||||||| || ||| Sbjct: 123906 agctactacacttctctgggactctttgtcatctctgttccaggcctctggtctcttatc 123965 Query: 115 aagcgctccgtcaagtccaag 135 |||||||| || || |||||| Sbjct: 123966 aagcgctctgttaaatccaag 123986 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 aggaaagaggagatcaaggt 461 |||||||||||||||||||| Sbjct: 125174 aggaaagaggagatcaaggt 125193
>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence Length = 221001 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cagcgccgagcctggtggccgggga 200 |||||||||||| |||||||||||| Sbjct: 181544 cagcgccgagccaggtggccgggga 181520
>ref|XM_973171.1| PREDICTED: Mus musculus GLI-Kruppel family member GLI2 (Gli2), mRNA Length = 6315 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cagcgccgagcctggtggccgggga 200 |||||||||||| |||||||||||| Sbjct: 1750 cagcgccgagccaggtggccgggga 1774
>ref|XM_911650.2| PREDICTED: Mus musculus GLI-Kruppel family member GLI2, transcript variant 2 (Gli2), mRNA Length = 6711 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cagcgccgagcctggtggccgggga 200 |||||||||||| |||||||||||| Sbjct: 2143 cagcgccgagccaggtggccgggga 2167
>ref|XM_136212.7| PREDICTED: Mus musculus GLI-Kruppel family member GLI2, transcript variant 1 (Gli2), mRNA Length = 6708 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cagcgccgagcctggtggccgggga 200 |||||||||||| |||||||||||| Sbjct: 2143 cagcgccgagccaggtggccgggga 2167
>ref|XM_750455.1| Aspergillus fumigatus Af293 papillary renal cell carcinoma-associated protein (Afu2g12160) partial mRNA Length = 1239 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 441 gaggaaagaggagatcaaggtgaag 465 ||||||||||||||||||| ||||| Sbjct: 540 gaggaaagaggagatcaagttgaag 564
>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence Length = 226926 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cagcgccgagcctggtggccgggga 200 |||||||||||| |||||||||||| Sbjct: 198730 cagcgccgagccaggtggccgggga 198754
>gb|AC119810.8| Mus musculus chromosome 7, clone RP23-54G21, complete sequence Length = 185939 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 575 tatacgtgaaggggatattcg 595 ||||||||||||||||||||| Sbjct: 40494 tatacgtgaaggggatattcg 40474
>emb|X99104.1|MMGLI2 M.musculus mRNA for gli2 gene Length = 5849 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cagcgccgagcctggtggccgggga 200 |||||||||||| |||||||||||| Sbjct: 1903 cagcgccgagccaggtggccgggga 1927
>ref|XM_482002.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 40.1 bits (20), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 cggtggaggcgacggggnacggg 41 ||||||||||||||||| ||||| Sbjct: 121 cggtggaggcgacgggggacggg 99
>gb|AC112925.8| Mus musculus chromosome 5, clone RP23-136I18, complete sequence Length = 195433 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gaaagaggagatcaaggtga 463 |||||||||||||||||||| Sbjct: 123942 gaaagaggagatcaaggtga 123923
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gaaagaggagatcaaggtga 463 |||||||||||||||||||| Sbjct: 49335 gaaagaggagatcaaggtga 49316
>ref|XM_324076.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1) partial mRNA Length = 3531 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 539 tgaggagggagctcaagatgagcg 562 |||||||||||||||||| ||||| Sbjct: 1208 tgaggagggagctcaagaagagcg 1231
>ref|XM_955262.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1) partial mRNA Length = 3531 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 539 tgaggagggagctcaagatgagcg 562 |||||||||||||||||| ||||| Sbjct: 1208 tgaggagggagctcaagaagagcg 1231
>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence Length = 185364 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 562 gagaaggggatgatatacgtgaag 585 |||||||||||||||||| ||||| Sbjct: 137692 gagaaggggatgatatacttgaag 137669
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cgtcccggggctctggtcgc 109 |||||||||||||||||||| Sbjct: 2521472 cgtcccggggctctggtcgc 2521491
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 cgcaggccagctactacacctcgc 70 |||||||||||||| ||||||||| Sbjct: 627842 cgcaggccagctacgacacctcgc 627819
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cagcgccgagcctggtggccgggg 199 ||||||||||||||||||| |||| Sbjct: 8323996 cagcgccgagcctggtggctgggg 8323973
>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence Length = 136964 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gaaagaggagatcaaggtga 463 |||||||||||||||||||| Sbjct: 133076 gaaagaggagatcaaggtga 133057
>ref|XM_548533.2| PREDICTED: Canis familiaris similar to G protein-coupled receptor 123 (LOC491412), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cgctggggctcttcgtgctc 87 |||||||||||||||||||| Sbjct: 1448 cgctggggctcttcgtgctc 1467
>emb|CR728642.1|CNS0GP60 Tetraodon nigroviridis full-length cDNA Length = 1943 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tgctgaccttctgcaccgtc 321 |||||||||||||||||||| Sbjct: 1283 tgctgaccttctgcaccgtc 1264
>emb|CR725398.2|CNS0GMNW Tetraodon nigroviridis full-length cDNA Length = 1942 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tgctgaccttctgcaccgtc 321 |||||||||||||||||||| Sbjct: 1281 tgctgaccttctgcaccgtc 1262
>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence Length = 108182 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 562 gagaaggggatgatatacgtgaag 585 |||||||||||||||||| ||||| Sbjct: 78154 gagaaggggatgatatacttgaag 78131
>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence Length = 151045 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 aatgtgtccgagattctggt 509 |||||||||||||||||||| Sbjct: 90022 aatgtgtccgagattctggt 90041
>emb|AL353629.22| Human DNA sequence from clone RP11-30L4 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene, two novel genes, the C9orf10 gene for chromosome 9 open reading frame 10, the 5' end of the PHF2 gene for PHD finger protein 2 and three CpG islands, complete sequence Length = 170845 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 aatgacaccaagcagctctcaggc 296 ||||||||||| |||||||||||| Sbjct: 132307 aatgacaccaaccagctctcaggc 132284
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gcgccgagcctggtggccgg 197 |||||||||||||||||||| Sbjct: 1726451 gcgccgagcctggtggccgg 1726432
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5, complete sequence Length = 197352 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 tggcttatgaccttaagccc 407 |||||||||||||||||||| Sbjct: 18302 tggcttatgaccttaagccc 18321
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 cggtggaggcgacggggnacggg 41 ||||||||||||||||| ||||| Sbjct: 17104999 cggtggaggcgacgggggacggg 17104977
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cagcgccgagcctggtggccgggg 199 ||||||||||||||||||| |||| Sbjct: 8321831 cagcgccgagcctggtggctgggg 8321808
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cagcgccgagcctggtggccgggg 199 ||||||||||||||||||| |||| Sbjct: 61252 cagcgccgagcctggtggctgggg 61229
>gb|AE004589.1| Pseudomonas aeruginosa PAO1, section 150 of 529 of the complete genome Length = 12948 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 cgctggggctcttcgtgctctccg 91 |||||||||||| ||||||||||| Sbjct: 10531 cgctggggctctgcgtgctctccg 10554
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 40.1 bits (20), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 cggtggaggcgacggggnacggg 41 ||||||||||||||||| ||||| Sbjct: 28854 cggtggaggcgacgggggacggg 28832
>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E02 Length = 144294 Score = 40.1 bits (20), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 cggtggaggcgacggggnacggg 41 ||||||||||||||||| ||||| Sbjct: 140516 cggtggaggcgacgggggacggg 140494
>gb|BC091721.1| Xenopus laevis cDNA clone IMAGE:4173501 Length = 2895 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 aggagatcaaggtgaagatg 468 |||||||||||||||||||| Sbjct: 2676 aggagatcaaggtgaagatg 2695
>dbj|AK100934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136E13, full insert sequence Length = 1525 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cagcgccgagcctggtggccgggg 199 ||||||||||||||||||| |||| Sbjct: 868 cagcgccgagcctggtggctgggg 845
>gb|L07391.1|NEUNIT6X Neurospora crassa nitrite reductase (nit-6) gene, exons 1-4 Length = 4800 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 539 tgaggagggagctcaagatgagcg 562 |||||||||||||||||| ||||| Sbjct: 2161 tgaggagggagctcaagaagagcg 2184
>dbj|AB070234.1| Branchiostoma floridae EF-1a gene for EF-1a partial cds Length = 3371 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctctcaggcagcattgctga 307 |||||||||||||||||||| Sbjct: 2313 ctctcaggcagcattgctga 2332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,935,835 Number of Sequences: 3902068 Number of extensions: 3935835 Number of successful extensions: 66895 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66562 Number of HSP's gapped (non-prelim): 329 length of query: 622 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 599 effective length of database: 17,143,297,704 effective search space: 10268835324696 effective search space used: 10268835324696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
