ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7d23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191752.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2721 Score = 519 bits (262), Expect = e-144 Identities = 439/498 (88%) Strand = Plus / Plus Query: 1 ggtggatatgtcaaagactacatggaagcaactgaaccatactttgcagtaggagagtac 60 |||||||||||| | || ||| ||||||||| |||||||| |||||||||||||||||| Sbjct: 2074 ggtggatatgtccacgattacttggaagcaagcgaaccatattttgcagtaggagagtac 2133 Query: 61 tgggactctctcagttatacttatggtgagatggattataaccaggatgctcacaggcag 120 ||||| ||||||||||| || |||||||| ||||||||||| || ||||| ||||||||| Sbjct: 2134 tgggattctctcagttacacctatggtgaaatggattataatcaagatgcccacaggcag 2193 Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || || Sbjct: 2194 agaatagttgattggataaatgctacaaatggaactgctggtgcatttgatgttaccacg 2253 Query: 181 aagggaatacttcatatggcactggaaagatctgagtattggcgcttgtctgatgaaaaa 240 || ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 2254 aaaggaatacttcactctgcactggaaagatctgagtactggcgtctgtctgatgaaaaa 2313 Query: 241 ggaaacccccctggagtattaggttggtggccttcacgtgcagtcacatttatagaaaat 300 ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 2314 ggaaaaccccctggagtgttaggttggtggccttcgcgtgctgtcacatttatagaaaat 2373 Query: 301 catgacaccggctctactcagggtcattggagattcccctatggtatggagatgcaaggc 360 |||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 2374 catgacactggttctactcagggtcattggagattcccctttggtatggagttgcaaggc 2433 Query: 361 tatgtctatatcttgacgcatcctggcactcctgcagtcttctatgatcacatcttctca 420 |||||||| ||||| || || || |||||||||||| ||||||||||||| || || || Sbjct: 2434 tatgtctacatcttaactcacccaggcactcctgcaatcttctatgatcatatattttcg 2493 Query: 421 cacttacaacaagatattgccaaattgatttctatcagacagcgcctaaagattcagtgc 480 || ||||| | ||| ||||| ||||| |||||||| ||| | |||| |||||| || ||| Sbjct: 2494 catttacagccagagattgctaaattaatttctattagaaatcgccaaaagatccattgc 2553 Query: 481 cgcagcaagatcaagata 498 || ||||||||||||||| Sbjct: 2554 cgtagcaagatcaagata 2571
>dbj|AK065152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B10, full insert sequence Length = 4179 Score = 519 bits (262), Expect = e-144 Identities = 439/498 (88%) Strand = Plus / Plus Query: 1 ggtggatatgtcaaagactacatggaagcaactgaaccatactttgcagtaggagagtac 60 |||||||||||| | || ||| ||||||||| |||||||| |||||||||||||||||| Sbjct: 3153 ggtggatatgtccacgattacttggaagcaagcgaaccatattttgcagtaggagagtac 3212 Query: 61 tgggactctctcagttatacttatggtgagatggattataaccaggatgctcacaggcag 120 ||||| ||||||||||| || |||||||| ||||||||||| || ||||| ||||||||| Sbjct: 3213 tgggattctctcagttacacctatggtgaaatggattataatcaagatgcccacaggcag 3272 Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || || Sbjct: 3273 agaatagttgattggataaatgctacaaatggaactgctggtgcatttgatgttaccacg 3332 Query: 181 aagggaatacttcatatggcactggaaagatctgagtattggcgcttgtctgatgaaaaa 240 || ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 3333 aaaggaatacttcactctgcactggaaagatctgagtactggcgtctgtctgatgaaaaa 3392 Query: 241 ggaaacccccctggagtattaggttggtggccttcacgtgcagtcacatttatagaaaat 300 ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 3393 ggaaaaccccctggagtgttaggttggtggccttcgcgtgctgtcacatttatagaaaat 3452 Query: 301 catgacaccggctctactcagggtcattggagattcccctatggtatggagatgcaaggc 360 |||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 3453 catgacactggttctactcagggtcattggagattcccctttggtatggagttgcaaggc 3512 Query: 361 tatgtctatatcttgacgcatcctggcactcctgcagtcttctatgatcacatcttctca 420 |||||||| ||||| || || || |||||||||||| ||||||||||||| || || || Sbjct: 3513 tatgtctacatcttaactcacccaggcactcctgcaatcttctatgatcatatattttcg 3572 Query: 421 cacttacaacaagatattgccaaattgatttctatcagacagcgcctaaagattcagtgc 480 || ||||| | ||| ||||| ||||| |||||||| ||| | |||| |||||| || ||| Sbjct: 3573 catttacagccagagattgctaaattaatttctattagaaatcgccaaaagatccattgc 3632 Query: 481 cgcagcaagatcaagata 498 || ||||||||||||||| Sbjct: 3633 cgtagcaagatcaagata 3650
>gb|AY107009.1| Zea mays PCO139185 mRNA sequence Length = 971 Score = 498 bits (251), Expect = e-137 Identities = 425/483 (87%) Strand = Plus / Plus Query: 27 agcaactgaaccatactttgcagtaggagagtactgggactctctcagttatacttatgg 86 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10 agcaagtgaaccatactttgcagtaggagagtactgggactccctcagttatacttatgg 69 Query: 87 tgagatggattataaccaggatgctcacaggcagagaattgttgactggataaacgctac 146 ||| ||||| || || |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 70 tgaaatggactacaatcaggatgcccacaggcagagaattgttgattggataaatgctac 129 Query: 147 aaatggaactgctggtgcatttgatgtcactactaagggaatacttcatatggcactgga 206 ||||||||||||||| ||||||||||| || ||||| |||||||||||| ||| || || Sbjct: 130 aaatggaactgctggcgcatttgatgttaccactaaaggaatacttcatgcggcgcttga 189 Query: 207 aagatctgagtattggcgcttgtctgatgaaaaaggaaacccccctggagtattaggttg 266 |||||| |||||||||||| |||| ||||||||||| || |||||||||||||| ||||| Sbjct: 190 aagatcagagtattggcgcctgtccgatgaaaaagggaaaccccctggagtattgggttg 249 Query: 267 gtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggtca 326 |||||||||| | ||||||||||||||||| |||||||| || || ||||||||||| || Sbjct: 250 gtggccttcaagagcagtcacatttatagagaatcatgatactggttctactcagggcca 309 Query: 327 ttggagattcccctatggtatggagatgcaaggctatgtctatatcttgacgcatcctgg 386 |||||| ||||||||||||||||| ||||||| || | ||| ||| |||| || ||||| Sbjct: 310 ttggaggttcccctatggtatggaactgcaaggatacgcctacatcctgacacaccctgg 369 Query: 387 cactcctgcagtcttctatgatcacatcttctcacacttacaacaagatattgccaaatt 446 |||||| |||||||||||||| ||||| || ||||||||||||| ||| || || ||||| Sbjct: 370 cactcccgcagtcttctatgaccacatattttcacacttacaaccagagatcgctaaatt 429 Query: 447 gatttctatcagacagcgcctaaagattcagtgccgcagcaagatcaagataatcaaggc 506 ||||| || |||| || | ||||||||| ||||||||||||||||||||| | ||||| Sbjct: 430 tatttccattcgacaccgtcaaaagattcattgccgcagcaagatcaagatactaaaggc 489 Query: 507 aga 509 ||| Sbjct: 490 aga 492
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 218 bits (110), Expect = 2e-53 Identities = 173/194 (89%) Strand = Plus / Plus Query: 1 ggtggatatgtcaaagactacatggaagcaactgaaccatactttgcagtaggagagtac 60 |||||||||||| | || ||| ||||||||| |||||||| |||||||||||||||||| Sbjct: 29761357 ggtggatatgtccacgattacttggaagcaagcgaaccatattttgcagtaggagagtac 29761416 Query: 61 tgggactctctcagttatacttatggtgagatggattataaccaggatgctcacaggcag 120 ||||| ||||||||||| || |||||||| ||||||||||| || ||||| ||||||||| Sbjct: 29761417 tgggattctctcagttacacctatggtgaaatggattataatcaagatgcccacaggcag 29761476 Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || || Sbjct: 29761477 agaatagttgattggataaatgctacaaatggaactgctggtgcatttgatgttaccacg 29761536 Query: 181 aagggaatacttca 194 || ||||||||||| Sbjct: 29761537 aaaggaatacttca 29761550 Score = 176 bits (89), Expect = 5e-41 Identities = 116/125 (92%) Strand = Plus / Plus Query: 198 ggcactggaaagatctgagtattggcgcttgtctgatgaaaaaggaaacccccctggagt 257 ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| Sbjct: 29761988 ggcactggaaagatctgagtactggcgtctgtctgatgaaaaaggaaaaccccctggagt 29762047 Query: 258 attaggttggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctac 317 ||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| Sbjct: 29762048 gttaggttggtggccttcgcgtgctgtcacatttatagaaaatcatgacactggttctac 29762107 Query: 318 tcagg 322 ||||| Sbjct: 29762108 tcagg 29762112 Score = 139 bits (70), Expect = 1e-29 Identities = 145/170 (85%) Strand = Plus / Plus Query: 320 agggtcattggagattcccctatggtatggagatgcaaggctatgtctatatcttgacgc 379 ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| || | Sbjct: 29762469 agggtcattggagattcccctttggtatggagttgcaaggctatgtctacatcttaactc 29762528 Query: 380 atcctggcactcctgcagtcttctatgatcacatcttctcacacttacaacaagatattg 439 | || |||||||||||| ||||||||||||| || || || || ||||| | ||| |||| Sbjct: 29762529 acccaggcactcctgcaatcttctatgatcatatattttcgcatttacagccagagattg 29762588 Query: 440 ccaaattgatttctatcagacagcgcctaaagattcagtgccgcagcaag 489 | ||||| |||||||| ||| | |||| |||||| || ||||| |||||| Sbjct: 29762589 ctaaattaatttctattagaaatcgccaaaagatccattgccgtagcaag 29762638
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 218 bits (110), Expect = 2e-53 Identities = 173/194 (89%) Strand = Plus / Plus Query: 1 ggtggatatgtcaaagactacatggaagcaactgaaccatactttgcagtaggagagtac 60 |||||||||||| | || ||| ||||||||| |||||||| |||||||||||||||||| Sbjct: 5452 ggtggatatgtccacgattacttggaagcaagcgaaccatattttgcagtaggagagtac 5511 Query: 61 tgggactctctcagttatacttatggtgagatggattataaccaggatgctcacaggcag 120 ||||| ||||||||||| || |||||||| ||||||||||| || ||||| ||||||||| Sbjct: 5512 tgggattctctcagttacacctatggtgaaatggattataatcaagatgcccacaggcag 5571 Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || || Sbjct: 5572 agaatagttgattggataaatgctacaaatggaactgctggtgcatttgatgttaccacg 5631 Query: 181 aagggaatacttca 194 || ||||||||||| Sbjct: 5632 aaaggaatacttca 5645 Score = 176 bits (89), Expect = 5e-41 Identities = 116/125 (92%) Strand = Plus / Plus Query: 198 ggcactggaaagatctgagtattggcgcttgtctgatgaaaaaggaaacccccctggagt 257 ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| Sbjct: 6083 ggcactggaaagatctgagtactggcgtctgtctgatgaaaaaggaaaaccccctggagt 6142 Query: 258 attaggttggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctac 317 ||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| Sbjct: 6143 gttaggttggtggccttcgcgtgctgtcacatttatagaaaatcatgacactggttctac 6202 Query: 318 tcagg 322 ||||| Sbjct: 6203 tcagg 6207 Score = 139 bits (70), Expect = 1e-29 Identities = 145/170 (85%) Strand = Plus / Plus Query: 320 agggtcattggagattcccctatggtatggagatgcaaggctatgtctatatcttgacgc 379 ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| || | Sbjct: 6564 agggtcattggagattcccctttggtatggagttgcaaggctatgtctacatcttaactc 6623 Query: 380 atcctggcactcctgcagtcttctatgatcacatcttctcacacttacaacaagatattg 439 | || |||||||||||| ||||||||||||| || || || || ||||| | ||| |||| Sbjct: 6624 acccaggcactcctgcaatcttctatgatcatatattttcgcatttacagccagagattg 6683 Query: 440 ccaaattgatttctatcagacagcgcctaaagattcagtgccgcagcaag 489 | ||||| |||||||| ||| | |||| |||||| || ||||| |||||| Sbjct: 6684 ctaaattaatttctattagaaatcgccaaaagatccattgccgtagcaag 6733
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 218 bits (110), Expect = 2e-53 Identities = 173/194 (89%) Strand = Plus / Plus Query: 1 ggtggatatgtcaaagactacatggaagcaactgaaccatactttgcagtaggagagtac 60 |||||||||||| | || ||| ||||||||| |||||||| |||||||||||||||||| Sbjct: 91088 ggtggatatgtccacgattacttggaagcaagcgaaccatattttgcagtaggagagtac 91147 Query: 61 tgggactctctcagttatacttatggtgagatggattataaccaggatgctcacaggcag 120 ||||| ||||||||||| || |||||||| ||||||||||| || ||||| ||||||||| Sbjct: 91148 tgggattctctcagttacacctatggtgaaatggattataatcaagatgcccacaggcag 91207 Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || || Sbjct: 91208 agaatagttgattggataaatgctacaaatggaactgctggtgcatttgatgttaccacg 91267 Query: 181 aagggaatacttca 194 || ||||||||||| Sbjct: 91268 aaaggaatacttca 91281 Score = 176 bits (89), Expect = 5e-41 Identities = 116/125 (92%) Strand = Plus / Plus Query: 198 ggcactggaaagatctgagtattggcgcttgtctgatgaaaaaggaaacccccctggagt 257 ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| Sbjct: 91719 ggcactggaaagatctgagtactggcgtctgtctgatgaaaaaggaaaaccccctggagt 91778 Query: 258 attaggttggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctac 317 ||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| Sbjct: 91779 gttaggttggtggccttcgcgtgctgtcacatttatagaaaatcatgacactggttctac 91838 Query: 318 tcagg 322 ||||| Sbjct: 91839 tcagg 91843 Score = 139 bits (70), Expect = 1e-29 Identities = 145/170 (85%) Strand = Plus / Plus Query: 320 agggtcattggagattcccctatggtatggagatgcaaggctatgtctatatcttgacgc 379 ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| || | Sbjct: 92200 agggtcattggagattcccctttggtatggagttgcaaggctatgtctacatcttaactc 92259 Query: 380 atcctggcactcctgcagtcttctatgatcacatcttctcacacttacaacaagatattg 439 | || |||||||||||| ||||||||||||| || || || || ||||| | ||| |||| Sbjct: 92260 acccaggcactcctgcaatcttctatgatcatatattttcgcatttacagccagagattg 92319 Query: 440 ccaaattgatttctatcagacagcgcctaaagattcagtgccgcagcaag 489 | ||||| |||||||| ||| | |||| |||||| || ||||| |||||| Sbjct: 92320 ctaaattaatttctattagaaatcgccaaaagatccattgccgtagcaag 92369
>gb|AY939871.1| Actinidia chinensis plastid alpha-amylase (AMY3) mRNA, complete cds; nuclear gene for plastid product Length = 3334 Score = 204 bits (103), Expect = 2e-49 Identities = 320/393 (81%) Strand = Plus / Plus Query: 19 tacatggaagcaactgaaccatactttgcagtaggagagtactgggactctctcagttat 78 ||||| || |||| ||| || |||||||| ||||| ||||| ||||| |||||||| | Sbjct: 2087 tacatagatgcaagtgagccttactttgctgtaggcgagtattgggattctctcagcyac 2146 Query: 79 acttatggtgagatggattataaccaggatgctcacaggcagagaattgttgactggata 138 |||||||||||||||||| | || || |||||||| |||||||||||| |||| ||||| Sbjct: 2147 acttatggtgagatggatcacaatcaagatgctcataggcagagaattattgaatggatc 2206 Query: 139 aacgctacaaatggaactgctggtgcatttgatgtcactactaagggaatacttcatatg 198 || ||||| | ||||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 2207 aatgctactagtggaactgctggtgcatttgacgtcacaactaaaggaattctacattct 2266 Query: 199 gcactggaaagatctgagtattggcgcttgtctgatgaaaaaggaaacccccctggagta 258 || || |||||| ||||||||||| || || ||| | || ||||| || || ||||| Sbjct: 2267 gcgcttcaaagatgcgagtattggcgattatcagatcagaagggaaaacctccaggagtt 2326 Query: 259 ttaggttggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctact 318 | || |||||||| || || ||||| || |||||||||||||||||||| || |||||| Sbjct: 2327 gttgggtggtggccgtctcgggcagttacgtttatagaaaatcatgacactgggtctact 2386 Query: 319 cagggtcattggagattcccctatggtatggagatgcaaggctatgtctatatcttgacg 378 ||||||||||||||||| || ||| | |||||||||||| |||| || ||| |||| Sbjct: 2387 cagggtcattggagatttccaggtggaaaggagatgcaagggtatgcatacatcctgact 2446 Query: 379 catcctggcactcctgcagtcttctatgatcac 411 ||||| || || || ||||| |||||||||||| Sbjct: 2447 catcccggaacaccagcagttttctatgatcac 2479
>gb|AY939869.1| Malus x domestica plastid alpha-amylase (AMY10) mRNA, complete cds; nuclear gene for plastid product Length = 3188 Score = 167 bits (84), Expect = 5e-38 Identities = 270/332 (81%) Strand = Plus / Plus Query: 1 ggtggatatgtcaaagactacatggaagcaactgaaccatactttgcagtaggagagtac 60 ||||| || ||||| ||||||||||| || | ||| || |||||||| ||||| ||||| Sbjct: 2113 ggtggctacgtcaaggactacatggatgccagtgagccctactttgccgtaggcgagtat 2172 Query: 61 tgggactctctcagttatacttatggtgagatggattataaccaggatgctcacaggcag 120 ||||| || || |||||||| || || || |||||| | || || ||||| ||||||||| Sbjct: 2173 tgggattccctaagttatacatacggggaaatggatcacaatcaagatgcacacaggcag 2232 Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||||||||| ||||| |||||||| ||||||||| ||||||||| |||||||| || Sbjct: 2233 agaattgttgattggatcaacgctactaatggaacttgtggtgcattcgatgtcacaaca 2292 Query: 181 aagggaatacttcatatggcactggaaagatctgagtattggcgcttgtctgatgaaaaa 240 || || || || ||| ||||||||||||| ||||||||||| ||||| ||||| || Sbjct: 2293 aaagggattctccatgcagcactggaaagatgcgagtattggcgattgtcagatgagaag 2352 Query: 241 ggaaacccccctggagtattaggttggtggccttcacgtgcagtcacatttatagaaaat 300 || || || || || || | || |||||||| || ||||| ||||| || ||||| ||| Sbjct: 2353 ggtaagcctccaggggttcttggatggtggccatctcgtgctgtcactttcatagagaat 2412 Query: 301 catgacaccggctctactcagggtcattggag 332 ||||| || || |||||||||||||||||||| Sbjct: 2413 catgatactggttctactcagggtcattggag 2444
>ref|NM_105651.2| Arabidopsis thaliana ATAMY3; alpha-amylase AT1G69830 (ATAMY3) mRNA, complete cds Length = 2950 Score = 109 bits (55), Expect = 1e-20 Identities = 175/215 (81%) Strand = Plus / Plus Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||||||||| || || || | |||| ||||||||||||||||||||||||| Sbjct: 2186 agaatagttgactggattaatgcaactagtggagctgctggtgcatttgatgtcactacc 2245 Query: 181 aagggaatacttcatatggcactggaaagatctgagtattggcgcttgtctgatgaaaaa 240 || ||||| ||||||| ||| || ||| || ||| |||||| | | || || |||| Sbjct: 2246 aaaggaattcttcatacggcgcttcaaaaatgtgaatattggagactctcagacccaaaa 2305 Query: 241 ggaaacccccctggagtattaggttggtggccttcacgtgcagtcacatttatagaaaat 300 || || || || || ||| | |||||||||||||| ||||| || ||||| || || ||| Sbjct: 2306 gggaagcctccaggtgtagttggttggtggccttctcgtgctgtaacattcatcgagaat 2365 Query: 301 catgacaccggctctactcagggtcattggagatt 335 |||||||| |||||||| ||||||||||||||||| Sbjct: 2366 catgacactggctctacacagggtcattggagatt 2400
>gb|BT000643.1| Arabidopsis thaliana putative alpha-amylase (At1g69830/T17F3_14) mRNA, complete cds Length = 2664 Score = 109 bits (55), Expect = 1e-20 Identities = 175/215 (81%) Strand = Plus / Plus Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||||||||| || || || | |||| ||||||||||||||||||||||||| Sbjct: 2137 agaatagttgactggattaatgcaactagtggagctgctggtgcatttgatgtcactacc 2196 Query: 181 aagggaatacttcatatggcactggaaagatctgagtattggcgcttgtctgatgaaaaa 240 || ||||| ||||||| ||| || ||| || ||| |||||| | | || || |||| Sbjct: 2197 aaaggaattcttcatacggcgcttcaaaaatgtgaatattggagactctcagacccaaaa 2256 Query: 241 ggaaacccccctggagtattaggttggtggccttcacgtgcagtcacatttatagaaaat 300 || || || || || ||| | |||||||||||||| ||||| || ||||| || || ||| Sbjct: 2257 gggaagcctccaggtgtagttggttggtggccttctcgtgctgtaacattcatcgagaat 2316 Query: 301 catgacaccggctctactcagggtcattggagatt 335 |||||||| |||||||| ||||||||||||||||| Sbjct: 2317 catgacactggctctacacagggtcattggagatt 2351
>gb|AY050398.1| Arabidopsis thaliana At1g69830/T17F3_14 mRNA, complete cds Length = 2939 Score = 109 bits (55), Expect = 1e-20 Identities = 175/215 (81%) Strand = Plus / Plus Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||||||||| || || || | |||| ||||||||||||||||||||||||| Sbjct: 2183 agaatagttgactggattaatgcaactagtggagctgctggtgcatttgatgtcactacc 2242 Query: 181 aagggaatacttcatatggcactggaaagatctgagtattggcgcttgtctgatgaaaaa 240 || ||||| ||||||| ||| || ||| || ||| |||||| | | || || |||| Sbjct: 2243 aaaggaattcttcatacggcgcttcaaaaatgtgaatattggagactctcagacccaaaa 2302 Query: 241 ggaaacccccctggagtattaggttggtggccttcacgtgcagtcacatttatagaaaat 300 || || || || || ||| | |||||||||||||| ||||| || ||||| || || ||| Sbjct: 2303 gggaagcctccaggtgtagttggttggtggccttctcgtgctgtaacattcatcgagaat 2362 Query: 301 catgacaccggctctactcagggtcattggagatt 335 |||||||| |||||||| ||||||||||||||||| Sbjct: 2363 catgacactggctctacacagggtcattggagatt 2397
>gb|AC010675.6|AC010675 Arabidopsis thaliana chromosome 1 BAC T17F3 genomic sequence, complete sequence Length = 84723 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 121 agaattgttgactggataaacgctacaaatggaactgctggtgcatttgatgtcactact 180 ||||| ||||||||||| || || || | |||| ||||||||||||||||||||||||| Sbjct: 64038 agaatagttgactggattaatgcaactagtggagctgctggtgcatttgatgtcactacc 64097 Query: 181 aagggaatacttcata 196 || ||||| ||||||| Sbjct: 64098 aaaggaattcttcata 64113 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 262 ggttggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcag 321 |||||||||||||| ||||| || ||||| || || ||||||||||| |||||||| ||| Sbjct: 64260 ggttggtggccttctcgtgctgtaacattcatcgagaatcatgacactggctctacacag 64319 Query: 322 g 322 | Sbjct: 64320 g 64320
>gb|AY110635.1| Zea mays CL7600_1 mRNA sequence Length = 1437 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggt 324 |||||||||||| | |||| |||||||| |||||||||||||| || || ||||||||| Sbjct: 673 tggtggccttcaagatcagttacatttattgaaaatcatgacactgggtccactcagggt 614 Query: 325 cattgg 330 |||||| Sbjct: 613 cattgg 608
>ref|XM_472377.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1239 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggt 324 ||||||||||| | ||||||||||| | |||||||||||||| || || ||||||||| Sbjct: 856 tggtggccttcgagatcagtcacatttgttgaaaatcatgacacaggatccactcagggt 915 Query: 325 cattgg 330 |||||| Sbjct: 916 cattgg 921
>gb|AF315739.1|AF315739 Arabidopsis thaliana PRLI-interacting factor E mRNA, partial cds Length = 590 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 298 aatcatgacaccggctctactcagggtcattggagatt 335 ||||||||||| |||||||| ||||||||||||||||| Sbjct: 16 aatcatgacactggctctacacagggtcattggagatt 53
>ref|NM_106262.2| Arabidopsis thaliana ATAMY2; alpha-amylase AT1G76130 (ATAMY2) mRNA, complete cds Length = 1487 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggt 324 |||||||||||| | || |||||||| | || || |||||||| ||||||||||||| | Sbjct: 942 tggtggccttcaagagctgtcacattccttgataaccatgacactggctctactcaggct 1001 Query: 325 cattgg 330 |||||| Sbjct: 1002 cattgg 1007
>gb|BT025560.1| Arabidopsis thaliana At1g76130 mRNA, complete cds Length = 1242 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggt 324 |||||||||||| | || |||||||| | || || |||||||| ||||||||||||| | Sbjct: 859 tggtggccttcaagagctgtcacattccttgataaccatgacactggctctactcaggct 918 Query: 325 cattgg 330 |||||| Sbjct: 919 cattgg 924
>dbj|AK221564.1| Arabidopsis thaliana mRNA for alpha-amylase like protein, complete cds, clone: RAFL07-81-C16 Length = 1492 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggt 324 |||||||||||| | || |||||||| | || || |||||||| ||||||||||||| | Sbjct: 946 tggtggccttcaagagctgtcacattccttgataaccatgacactggctctactcaggct 1005 Query: 325 cattgg 330 |||||| Sbjct: 1006 cattgg 1011
>gb|AY084871.1| Arabidopsis thaliana clone 119931 mRNA, complete sequence Length = 1466 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagggt 324 |||||||||||| | || |||||||| | || || |||||||| ||||||||||||| | Sbjct: 942 tggtggccttcaagagctgtcacattccttgataaccatgacactggctctactcaggct 1001 Query: 325 cattgg 330 |||||| Sbjct: 1002 cattgg 1007
>gb|AC084243.7| Homo sapiens chromosome 11, clone CTD-3224I3, complete sequence Length = 154201 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 432 agatattgccaaattgatttcta 454 ||||||||||||||||||||||| Sbjct: 71721 agatattgccaaattgatttcta 71699
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagg 322 ||||||||||| | ||||||||||| | |||||||||||||| || || ||||||| Sbjct: 79610 tggtggccttcgagatcagtcacatttgttgaaaatcatgacacaggatccactcagg 79667
>emb|AJ843124.1| Plantago major mRNA for alpha-amylase (aamy1 gene) Length = 1654 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 262 ggttggtggccttcacgtgcagtcacattt 291 ||||||||||||||| | |||||||||||| Sbjct: 986 ggttggtggccttcaagggcagtcacattt 1015
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagg 322 ||||||||||| | ||||||||||| | |||||||||||||| || || ||||||| Sbjct: 20016947 tggtggccttcgagatcagtcacatttgttgaaaatcatgacacaggatccactcagg 20017004
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence Length = 97554 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 265 tggtggccttcacgtgcagtcacatttatagaaaatcatgacaccggctctactcagg 322 |||||||||||| | || |||||||| | || || |||||||| ||||||||||||| Sbjct: 19431 tggtggccttcaagagctgtcacattccttgataaccatgacactggctctactcagg 19488
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 aagatcggcagcggacatttt 573 ||||||||||||||||||||| Sbjct: 354655 aagatcggcagcggacatttt 354635
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 aagatcggcagcggacatttt 573 ||||||||||||||||||||| Sbjct: 354466 aagatcggcagcggacatttt 354446
>dbj|AB077387.1| Ipomoea nil PnAmy1 mRNA for alpha-amylase, complete cds Length = 1635 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 283 gtcacatttatagaaaatcatgacaccgg 311 ||||| |||||||| |||||||||||||| Sbjct: 909 gtcacttttatagataatcatgacaccgg 937
>gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, complete sequence Length = 203580 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 tcctggcactcctgcagtcttcta 404 ||||||||||||| |||||||||| Sbjct: 180523 tcctggcactcctccagtcttcta 180546
>gb|AC110563.4| Mus musculus chromosome 3, clone RP23-287O4, complete sequence Length = 237878 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 tcctggcactcctgcagtcttcta 404 ||||||||||||| |||||||||| Sbjct: 215240 tcctggcactcctccagtcttcta 215217
>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3' end of the gene for progesterone-induced blocking factor 1 (PIBF1), a proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a fatty acid binding protein 5 (psoriasis-associated) (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a CpG island, complete sequence Length = 199882 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 ttacaacaagatattgccaa 443 |||||||||||||||||||| Sbjct: 50782 ttacaacaagatattgccaa 50763
>ref|XM_790023.1| PREDICTED: Strongylocentrotus purpuratus similar to dynein, axonemal, heavy chain 5 (LOC590418), mRNA Length = 7098 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gaaccatactttgcagtagg 53 |||||||||||||||||||| Sbjct: 6222 gaaccatactttgcagtagg 6203
>gb|AC142095.9| Medicago truncatula clone mth2-14c17, complete sequence Length = 110037 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 aaggcagaacagaatttgta 521 |||||||||||||||||||| Sbjct: 87394 aaggcagaacagaatttgta 87375
>gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, complete sequence Length = 186160 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 aagatattgccaaattgatttcta 454 ||||||||||||||||| |||||| Sbjct: 88240 aagatattgccaaattgctttcta 88263
>ref|NM_073184.1| Caenorhabditis elegans F57A8.6 (F57A8.6) mRNA, complete cds Length = 1158 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 acgctacaaatggaactgct 159 |||||||||||||||||||| Sbjct: 422 acgctacaaatggaactgct 441
>gb|DQ015703.1| Homo sapiens mitogen-activated protein kinase kinase 4 (MAP2K4) gene, complete cds Length = 125331 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gatgctcacaggcagagaat 125 |||||||||||||||||||| Sbjct: 104500 gatgctcacaggcagagaat 104519
>gb|U17241.1|ACU17241 Actinidia chinensis S-adenosylmethionine synthetase mRNA, partial cds Length = 1272 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 catatggcactggaaagatc 212 |||||||||||||||||||| Sbjct: 867 catatggcactggaaagatc 886
>gb|AC107780.12| Mus musculus chromosome 8, clone RP23-61O10, complete sequence Length = 244047 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gcttgtctgatgaaaaagga 243 |||||||||||||||||||| Sbjct: 80815 gcttgtctgatgaaaaagga 80796
>gb|AC005244.1|AC005244 Homo sapiens chromosome 17, clone hRPK.471_L_13, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gatgctcacaggcagagaat 125 |||||||||||||||||||| Sbjct: 97636 gatgctcacaggcagagaat 97617
>emb|Z70781.1|CEF57A8 Caenorhabditis elegans Cosmid F57A8, complete sequence Length = 30894 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 acgctacaaatggaactgct 159 |||||||||||||||||||| Sbjct: 27555 acgctacaaatggaactgct 27536 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,306,949 Number of Sequences: 3902068 Number of extensions: 5306949 Number of successful extensions: 100890 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100711 Number of HSP's gapped (non-prelim): 175 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
