| Clone Name | baal7d10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550431.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2733 Score = 509 bits (257), Expect = e-141 Identities = 513/597 (85%), Gaps = 1/597 (0%) Strand = Plus / Plus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 141 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 200 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgaggctgggataactggatgcgaca 123 ||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| || | Sbjct: 201 gcaaggtcaccgccaacctcgccgccgtcatagccgaggctggtataagtggatgtgata 260 Query: 124 agtccgtcgggaatcttctgtacgcagttgccacgaagtacccaaataatgcacttgtcc 183 || | || ||||| || |||||| | |||||||| || ||||||| ||||| ||||||| Sbjct: 261 agacggttgggaacctcctgtacacggttgccactaaatacccaaccaatgcgcttgtcc 320 Query: 184 atcgtcctgctctcattagctacatcgtttcgaccaagatcaagaaccctgcacagctag 243 ||||||||| |||||| ||| || || || || ||||| ||||| |||||||| |||| Sbjct: 321 atcgtcctgtactcattgactatattgtgtcaacgaagataaagaatcctgcacaactag 380 Query: 244 atgctgctctgtcgtttcttactaataccggtcctgaatctttggatattgggaagtttg 303 ||||||||||||| || ||||||||||| || ||||| ||||| |||| ||||||||||| Sbjct: 381 atgctgctctgtcattccttactaatactggccctgactctttagatactgggaagtttg 440 Query: 304 aagaagcctgtggtgtaggtgtggttgtttctattgaagagattcagtcaactgtctctg 363 ||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| || Sbjct: 441 aagaagcctgtggtgtaggtgtggttgtttcaattgaagagattaaatcaacagtcaatg 500 Query: 364 aggttctgaaggaaaacctggaagctatattggagcagcgctatcacataaatgttggtg 423 |||| | ||| | || |||| ||||||||||||||||| ||||| || ||||||||| Sbjct: 501 aggtattaaagcataatatggaggctatattggagcagcgatatcatattaatgttggta 560 Query: 424 gcctatgcggacaggtcaggaagcggcacccctggggcgatgccaaggcaacaaaggagg 483 ||||||||||||||| |||||| ||||||||||||| ||||| ||||| || ||||| | Sbjct: 561 acctatgcggacaggttaggaagaggcacccctggggtgatgctaaggcgaccaaggatg 620 Query: 484 agattgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatgtaaaac 543 | ||||| ||||||||||| |||||| ||||||| ||||| || |||||||||||||||| Sbjct: 621 aaattgacaagaagcttgcagagatattaggtccaaagacagatgctgacaatgtaaaac 680 Query: 544 cagtgaaaaagaagaaggagaaaccggcaaaagttgaggagaaaaaggttgcagtag 600 ||||||||||||| ||||| ||| | |||||||||||||||||||| | |||||||| Sbjct: 681 cagtgaaaaagaaaaaggaaaaagcagcaaaagttgaggagaaaaaagctgcagtag 737
>dbj|AK065125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P05, full insert sequence Length = 2734 Score = 509 bits (257), Expect = e-141 Identities = 513/597 (85%), Gaps = 1/597 (0%) Strand = Plus / Plus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 141 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 200 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgaggctgggataactggatgcgaca 123 ||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| || | Sbjct: 201 gcaaggtcaccgccaacctcgccgccgtcatagccgaggctggtataagtggatgtgata 260 Query: 124 agtccgtcgggaatcttctgtacgcagttgccacgaagtacccaaataatgcacttgtcc 183 || | || ||||| || |||||| | |||||||| || ||||||| ||||| ||||||| Sbjct: 261 agacggttgggaacctcctgtacacggttgccactaaatacccaaccaatgcgcttgtcc 320 Query: 184 atcgtcctgctctcattagctacatcgtttcgaccaagatcaagaaccctgcacagctag 243 ||||||||| |||||| ||| || || || || ||||| ||||| |||||||| |||| Sbjct: 321 atcgtcctgtactcattgactatattgtgtcaacgaagataaagaatcctgcacaactag 380 Query: 244 atgctgctctgtcgtttcttactaataccggtcctgaatctttggatattgggaagtttg 303 ||||||||||||| || ||||||||||| || ||||| ||||| |||| ||||||||||| Sbjct: 381 atgctgctctgtcattccttactaatactggccctgactctttagatactgggaagtttg 440 Query: 304 aagaagcctgtggtgtaggtgtggttgtttctattgaagagattcagtcaactgtctctg 363 ||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| || Sbjct: 441 aagaagcctgtggtgtaggtgtggttgtttcaattgaagagattaaatcaacagtcaatg 500 Query: 364 aggttctgaaggaaaacctggaagctatattggagcagcgctatcacataaatgttggtg 423 |||| | ||| | || |||| ||||||||||||||||| ||||| || ||||||||| Sbjct: 501 aggtattaaagcataatatggaggctatattggagcagcgatatcatattaatgttggta 560 Query: 424 gcctatgcggacaggtcaggaagcggcacccctggggcgatgccaaggcaacaaaggagg 483 ||||||||||||||| |||||| ||||||||||||| ||||| ||||| || ||||| | Sbjct: 561 acctatgcggacaggttaggaagaggcacccctggggtgatgctaaggcgaccaaggatg 620 Query: 484 agattgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatgtaaaac 543 | ||||| ||||||||||| |||||| ||||||| ||||| || |||||||||||||||| Sbjct: 621 aaattgacaagaagcttgcagagatattaggtccaaagacagatgctgacaatgtaaaac 680 Query: 544 cagtgaaaaagaagaaggagaaaccggcaaaagttgaggagaaaaaggttgcagtag 600 ||||||||||||| ||||| ||| | |||||||||||||||||||| | |||||||| Sbjct: 681 cagtgaaaaagaaaaaggaaaaagcagcaaaagttgaggagaaaaaagctgcagtag 737
>dbj|AK105222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-E10, full insert sequence Length = 740 Score = 454 bits (229), Expect = e-124 Identities = 467/545 (85%), Gaps = 1/545 (0%) Strand = Plus / Plus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 196 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 255 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgaggctgggataactggatgcgaca 123 ||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| || | Sbjct: 256 gcaaggtcaccgccaacctcgccgccgtcatagccgaggctggtataagtggatgtgata 315 Query: 124 agtccgtcgggaatcttctgtacgcagttgccacgaagtacccaaataatgcacttgtcc 183 || | || ||||| || |||||| | |||||||| || ||||||| ||||| ||||||| Sbjct: 316 agacggttgggaacctcctgtacacggttgccactaaatacccaaccaatgcgcttgtcc 375 Query: 184 atcgtcctgctctcattagctacatcgtttcgaccaagatcaagaaccctgcacagctag 243 ||||||||| |||||| ||| || || || || ||||| ||||| |||||||| |||| Sbjct: 376 atcgtcctgtactcattgactatattgtgtcaacgaagataaagaatcctgcacaactag 435 Query: 244 atgctgctctgtcgtttcttactaataccggtcctgaatctttggatattgggaagtttg 303 ||||||||||||| || ||||||||||| || ||||| ||||| |||| ||||||||||| Sbjct: 436 atgctgctctgtcattccttactaatactggccctgactctttagatactgggaagtttg 495 Query: 304 aagaagcctgtggtgtaggtgtggttgtttctattgaagagattcagtcaactgtctctg 363 ||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| || Sbjct: 496 aagaagcctgtggtgtaggtgtggttgtttcaattgaagagattaaatcaacagtcaatg 555 Query: 364 aggttctgaaggaaaacctggaagctatattggagcagcgctatcacataaatgttggtg 423 |||| | ||| | || |||| ||||||||||||||||| ||||| || ||||||||| Sbjct: 556 aggtattaaagcataatatggaggctatattggagcagcgatatcatattaatgttggta 615 Query: 424 gcctatgcggacaggtcaggaagcggcacccctggggcgatgccaaggcaacaaaggagg 483 ||||||||||||||| |||||| ||||||||||||| ||||| ||||| || ||||| | Sbjct: 616 acctatgcggacaggttaggaagaggcacccctggggtgatgctaaggcgaccaaggatg 675 Query: 484 agattgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatgtaaaac 543 | ||||| ||||||||||| |||||| ||||||| ||||| || |||||||||||||||| Sbjct: 676 aaattgacaagaagcttgcagagatattaggtccaaagacagatgctgacaatgtaaaac 735 Query: 544 cagtg 548 ||||| Sbjct: 736 cagtg 740
>dbj|AK062984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F07, full insert sequence Length = 743 Score = 454 bits (229), Expect = e-124 Identities = 467/545 (85%), Gaps = 1/545 (0%) Strand = Plus / Plus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 199 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 258 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgaggctgggataactggatgcgaca 123 ||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| || | Sbjct: 259 gcaaggtcaccgccaacctcgccgccgtcatagccgaggctggtataagtggatgtgata 318 Query: 124 agtccgtcgggaatcttctgtacgcagttgccacgaagtacccaaataatgcacttgtcc 183 || | || ||||| || |||||| | |||||||| || ||||||| ||||| ||||||| Sbjct: 319 agacggttgggaacctcctgtacacggttgccactaaatacccaaccaatgcgcttgtcc 378 Query: 184 atcgtcctgctctcattagctacatcgtttcgaccaagatcaagaaccctgcacagctag 243 ||||||||| |||||| ||| || || || || ||||| ||||| |||||||| |||| Sbjct: 379 atcgtcctgtactcattgactatattgtgtcaacgaagataaagaatcctgcacaactag 438 Query: 244 atgctgctctgtcgtttcttactaataccggtcctgaatctttggatattgggaagtttg 303 ||||||||||||| || ||||||||||| || ||||| ||||| |||| ||||||||||| Sbjct: 439 atgctgctctgtcattccttactaatactggccctgactctttagatactgggaagtttg 498 Query: 304 aagaagcctgtggtgtaggtgtggttgtttctattgaagagattcagtcaactgtctctg 363 ||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| || Sbjct: 499 aagaagcctgtggtgtaggtgtggttgtttcaattgaagagattaaatcaacagtcaatg 558 Query: 364 aggttctgaaggaaaacctggaagctatattggagcagcgctatcacataaatgttggtg 423 |||| | ||| | || |||| ||||||||||||||||| ||||| || ||||||||| Sbjct: 559 aggtattaaagcataatatggaggctatattggagcagcgatatcatattaatgttggta 618 Query: 424 gcctatgcggacaggtcaggaagcggcacccctggggcgatgccaaggcaacaaaggagg 483 ||||||||||||||| |||||| ||||||||||||| ||||| ||||| || ||||| | Sbjct: 619 acctatgcggacaggttaggaagaggcacccctggggtgatgctaaggcgaccaaggatg 678 Query: 484 agattgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatgtaaaac 543 | ||||| ||||||||||| |||||| ||||||| ||||| || |||||||||||||||| Sbjct: 679 aaattgacaagaagcttgcagagatattaggtccaaagacagatgctgacaatgtaaaac 738 Query: 544 cagtg 548 ||||| Sbjct: 739 cagtg 743
>dbj|AK121273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107C15, full insert sequence Length = 2758 Score = 252 bits (127), Expect = 1e-63 Identities = 448/555 (80%) Strand = Plus / Plus Query: 35 gcgcacggccgagaacgcgctggtcaatagcaaggtcaccgccaacctagccgccgtcgt 94 ||||||||| |||||||| || | ||| ||||||||||||||||||| |||||||| | Sbjct: 184 gcgcacggcggagaacgccctcgccaaccgcaaggtcaccgccaacctcaccgccgtcat 243 Query: 95 agccgaggctgggataactggatgcgacaagtccgtcgggaatcttctgtacgcagttgc 154 ||||||||||| | | ||| || ||||| || || ||||||||||| ||| | || || Sbjct: 244 cgccgaggctggtgttagtgggtgtgacaaatctgtggggaatcttctctacactgtcgc 303 Query: 155 cacgaagtacccaaataatgcacttgtccatcgtcctgctctcattagctacatcgtttc 214 |||||||| || ||||| || || |||||||| | | |||| ||||| || || Sbjct: 304 gacgaagtatccggcgaatgccctggtgcatcgtcccgttgtcatccaatacattgtgtc 363 Query: 215 gaccaagatcaagaaccctgcacagctagatgctgctctgtcgtttcttactaataccgg 274 | | |||||||||| ||| || || ||||||||||||||||||||||| ||| | || Sbjct: 364 gtcaaagatcaagacccccgcgcaattagatgctgctctgtcgtttctttctactttggg 423 Query: 275 tcctgaatctttggatattgggaagtttgaagaagcctgtggtgtaggtgtggttgtttc 334 |||||| | ||||| | | ||||||||||| | ||||| || || ||||||||||| Sbjct: 424 tcctgatccattggacacagcaaagtttgaagagacatgtggagtgggggtggttgtttc 483 Query: 335 tattgaagagattcagtcaactgtctctgaggttctgaaggaaaacctggaagctatatt 394 | ||||||||||||||||| ||| |||| | |||||||||||| ||||||| ||| | Sbjct: 484 aactgaagagattcagtcaatggtcactgatatcctgaaggaaaacatggaagccatagt 543 Query: 395 ggagcagcgctatcacataaatgttggtggcctatgcggacaggtcaggaagcggcaccc 454 || ||||| ||||| ||||||||||| || | ||||||||||| |||||| ||||||| Sbjct: 544 tgaacagcgatatcatataaatgttggcagcttgtgcggacaggttaggaagtggcaccc 603 Query: 455 ctggggcgatgccaaggcaacaaaggaggagattgagaagaagcttgctgagatactagg 514 |||||||||||| ||| | ||||||||| ||||| || | |||| | ||||| || || Sbjct: 604 ctggggcgatgctaagttcataaaggaggaaattgataaaaggcttacagagattcttgg 663 Query: 515 tccgaagacggaagctgacaatgtaaaaccagtgaaaaagaagaaggagaaaccggcaaa 574 ||| ||||| ||||||||||||||||| || |||||||||||||||||||| || ||||| Sbjct: 664 tccaaagacagaagctgacaatgtaaagcctgtgaaaaagaagaaggagaagcccgcaaa 723 Query: 575 agttgaggagaaaaa 589 ||||||||||||||| Sbjct: 724 agttgaggagaaaaa 738
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 127 bits (64), Expect = 5e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 220 agatcaagaaccctgcacagctagatgctgctctgtcgtttcttactaataccggtcctg 279 |||| ||||| |||||||| ||||||||||||||||| || ||||||||||| || |||| Sbjct: 4518188 agataaagaatcctgcacaactagatgctgctctgtcattccttactaatactggccctg 4518129 Query: 280 aatctttggatattgggaagtttgaagaagcctgtggtgtaggt 323 | ||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 4518128 actctttagatactgggaagtttgaagaagcctgtggtgtaggt 4518085 Score = 113 bits (57), Expect = 7e-22 Identities = 87/97 (89%) Strand = Plus / Minus Query: 486 attgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatgtaaaacca 545 ||||| ||||||||||| |||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 4517517 attgacaagaagcttgcagagatattaggtccaaagacagatgctgacaatgtaaaacca 4517458 Query: 546 gtgaaaaagaagaaggagaaaccggcaaaagttgagg 582 ||||||||||| ||||| ||| | ||||||||||||| Sbjct: 4517457 gtgaaaaagaaaaaggaaaaagcagcaaaagttgagg 4517421 Score = 109 bits (55), Expect = 1e-20 Identities = 89/99 (89%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 4519406 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 4519347 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgagg 102 ||||||||||||||||||| ||||||||| ||||||||| Sbjct: 4519346 gcaaggtcaccgccaacctcgccgccgtcatagccgagg 4519308 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 425 cctatgcggacaggtcaggaagcggcacccctggggcgatgccaaggc 472 ||||||||||||||| |||||| ||||||||||||| ||||| ||||| Sbjct: 4517663 cctatgcggacaggttaggaagaggcacccctggggtgatgctaaggc 4517616 Score = 60.0 bits (30), Expect = 9e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 320 aggtgtggttgtttctattgaagagattcagtcaactgtctctgaggttctgaaggaaaa 379 ||||||||||||||| |||||||||||| | ||||| ||| |||||| | ||| | || Sbjct: 4517857 aggtgtggttgtttcaattgaagagattaaatcaacagtcaatgaggtattaaagcataa 4517798 Query: 380 cctggaagctatattggagcagcgctatca 409 |||| ||||||||||||||||| ||||| Sbjct: 4517797 tatggaggctatattggagcagcgatatca 4517768 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 150 gttgccacgaagtacccaaataatgcacttgtccatcgtcctg 192 |||||||| || ||||||| ||||| |||||||||||||||| Sbjct: 4518394 gttgccactaaatacccaaccaatgcgcttgtccatcgtcctg 4518352 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aagtttgaagaagcctgtgg 316 |||||||||||||||||||| Sbjct: 27942379 aagtttgaagaagcctgtgg 27942398 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 caccgccaacctagccgccgtcgt 94 |||||||| ||||||||||||||| Sbjct: 7647928 caccgccaccctagccgccgtcgt 7647905
>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F03 Length = 149699 Score = 127 bits (64), Expect = 5e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 220 agatcaagaaccctgcacagctagatgctgctctgtcgtttcttactaataccggtcctg 279 |||| ||||| |||||||| ||||||||||||||||| || ||||||||||| || |||| Sbjct: 52875 agataaagaatcctgcacaactagatgctgctctgtcattccttactaatactggccctg 52816 Query: 280 aatctttggatattgggaagtttgaagaagcctgtggtgtaggt 323 | ||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 52815 actctttagatactgggaagtttgaagaagcctgtggtgtaggt 52772 Score = 113 bits (57), Expect = 7e-22 Identities = 87/97 (89%) Strand = Plus / Minus Query: 486 attgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatgtaaaacca 545 ||||| ||||||||||| |||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 52204 attgacaagaagcttgcagagatattaggtccaaagacagatgctgacaatgtaaaacca 52145 Query: 546 gtgaaaaagaagaaggagaaaccggcaaaagttgagg 582 ||||||||||| ||||| ||| | ||||||||||||| Sbjct: 52144 gtgaaaaagaaaaaggaaaaagcagcaaaagttgagg 52108 Score = 109 bits (55), Expect = 1e-20 Identities = 89/99 (89%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 54093 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 54034 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgagg 102 ||||||||||||||||||| ||||||||| ||||||||| Sbjct: 54033 gcaaggtcaccgccaacctcgccgccgtcatagccgagg 53995 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 425 cctatgcggacaggtcaggaagcggcacccctggggcgatgccaaggc 472 ||||||||||||||| |||||| ||||||||||||| ||||| ||||| Sbjct: 52350 cctatgcggacaggttaggaagaggcacccctggggtgatgctaaggc 52303 Score = 60.0 bits (30), Expect = 9e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 320 aggtgtggttgtttctattgaagagattcagtcaactgtctctgaggttctgaaggaaaa 379 ||||||||||||||| |||||||||||| | ||||| ||| |||||| | ||| | || Sbjct: 52544 aggtgtggttgtttcaattgaagagattaaatcaacagtcaatgaggtattaaagcataa 52485 Query: 380 cctggaagctatattggagcagcgctatca 409 |||| ||||||||||||||||| ||||| Sbjct: 52484 tatggaggctatattggagcagcgatatca 52455 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 150 gttgccacgaagtacccaaataatgcacttgtccatcgtcctg 192 |||||||| || ||||||| ||||| |||||||||||||||| Sbjct: 53081 gttgccactaaatacccaaccaatgcgcttgtccatcgtcctg 53039
>dbj|AK111284.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H07, full insert sequence Length = 619 Score = 109 bits (55), Expect = 1e-20 Identities = 89/99 (89%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 5 tggagacgctgctcgcgctcggcctcgacc-gcgcacggccgagaacgcgctggtcaata 63 ||||| ||||||| ||||| || ||||||| ||||||||| |||||||| |||||||| | Sbjct: 195 tggaggcgctgctggcgctggggctcgaccagcgcacggcggagaacgctctggtcaaca 254 Query: 64 gcaaggtcaccgccaacctagccgccgtcgtagccgagg 102 ||||||||||||||||||| ||||||||| ||||||||| Sbjct: 255 gcaaggtcaccgccaacctcgccgccgtcatagccgagg 293
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 478 aggaggagattgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatg 537 ||||||| ||||| || | |||| | ||||| || ||||| ||||| ||||||||||||| Sbjct: 17293 aggaggaaattgataaaaggcttacagagattcttggtccaaagacagaagctgacaatg 17234 Query: 538 taaaaccagtgaaaaagaagaaggagaaaccggcaaaagttgagg 582 |||| || |||||||||||||||||||| || ||||||||||||| Sbjct: 17233 taaagcctgtgaaaaagaagaaggagaagcccgcaaaagttgagg 17189 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 324 gtggttgtttctattgaagagattcagtcaactgtctctgaggttctgaaggaaaacctg 383 ||||||||||| | ||||||||||||||||| ||| |||| | |||||||||||| || Sbjct: 17673 gtggttgtttcaactgaagagattcagtcaatggtcactgatatcctgaaggaaaacatg 17614 Query: 384 gaagctatattggagcagcgctatcacataaatg 417 ||||| ||| | || ||||| ||||| ||||||| Sbjct: 17613 gaagccatagttgaacagcgatatcatataaatg 17580 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 429 tgcggacaggtcaggaagcggcacccctggggcgatgc 466 ||||||||||| |||||| ||||||||||||||||||| Sbjct: 17452 tgcggacaggttaggaagtggcacccctggggcgatgc 17415 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 35 gcgcacggccgagaacgcgctggtcaatagcaaggtcaccgccaacctagccgccgtcgt 94 ||||||||| |||||||| || | ||| ||||||||||||||||||| |||||||| | Sbjct: 18504 gcgcacggcggagaacgccctcgccaaccgcaaggtcaccgccaacctcaccgccgtcat 18445 Query: 95 agccgagg 102 ||||||| Sbjct: 18444 cgccgagg 18437 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 220 agatcaagaaccctgcacagctagatgctgctctgtcgtttctt 263 ||||||||| ||| || || ||||||||||||||||||||||| Sbjct: 18040 agatcaagacccccgcgcaattagatgctgctctgtcgtttctt 17997
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 478 aggaggagattgagaagaagcttgctgagatactaggtccgaagacggaagctgacaatg 537 ||||||| ||||| || | |||| | ||||| || ||||| ||||| ||||||||||||| Sbjct: 4922708 aggaggaaattgataaaaggcttacagagattcttggtccaaagacagaagctgacaatg 4922649 Query: 538 taaaaccagtgaaaaagaagaaggagaaaccggcaaaagttgagg 582 |||| || |||||||||||||||||||| || ||||||||||||| Sbjct: 4922648 taaagcctgtgaaaaagaagaaggagaagcccgcaaaagttgagg 4922604 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 324 gtggttgtttctattgaagagattcagtcaactgtctctgaggttctgaaggaaaacctg 383 ||||||||||| | ||||||||||||||||| ||| |||| | |||||||||||| || Sbjct: 4923088 gtggttgtttcaactgaagagattcagtcaatggtcactgatatcctgaaggaaaacatg 4923029 Query: 384 gaagctatattggagcagcgctatcacataaatg 417 ||||| ||| | || ||||| ||||| ||||||| Sbjct: 4923028 gaagccatagttgaacagcgatatcatataaatg 4922995 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 429 tgcggacaggtcaggaagcggcacccctggggcgatgc 466 ||||||||||| |||||| ||||||||||||||||||| Sbjct: 4922867 tgcggacaggttaggaagtggcacccctggggcgatgc 4922830 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 35 gcgcacggccgagaacgcgctggtcaatagcaaggtcaccgccaacctagccgccgtcgt 94 ||||||||| |||||||| || | ||| ||||||||||||||||||| |||||||| | Sbjct: 4923919 gcgcacggcggagaacgccctcgccaaccgcaaggtcaccgccaacctcaccgccgtcat 4923860 Query: 95 agccgagg 102 ||||||| Sbjct: 4923859 cgccgagg 4923852 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 220 agatcaagaaccctgcacagctagatgctgctctgtcgtttctt 263 ||||||||| ||| || || ||||||||||||||||||||||| Sbjct: 4923455 agatcaagacccccgcgcaattagatgctgctctgtcgtttctt 4923412
>gb|AC127589.4| Mus musculus BAC clone RP23-134K6 from 5, complete sequence Length = 209121 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 gcctgtggtgtaggtgtggttg 330 |||||||||||||||||||||| Sbjct: 63528 gcctgtggtgtaggtgtggttg 63507
>ref|NM_112206.1| Arabidopsis thaliana calmodulin binding AT3G13600 mRNA, complete cds Length = 1818 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 548 gaaaaagaagaaggagaaacc 568 ||||||||||||||||||||| Sbjct: 1480 gaaaaagaagaaggagaaacc 1500
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gacgctgctcgcgctcggcct 29 ||||||||||||||||||||| Sbjct: 1260436 gacgctgctcgcgctcggcct 1260456
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 aaaggaggagattgagaagaa 496 ||||||||||||||||||||| Sbjct: 1132877 aaaggaggagattgagaagaa 1132897
>ref|NM_011327.1| Mus musculus sterol carrier protein 2, liver (Scp2), mRNA Length = 2626 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1368 aggagattgagaagaagcttg 1388
>gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chromosome 7, complete sequence Length = 176962 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 ttctgaaggaaaacctggaag 387 ||||||||||||||||||||| Sbjct: 33305 ttctgaaggaaaacctggaag 33325
>ref|XM_571344.1| Cryptococcus neoformans var. neoformans JEC21 import inner membrane translocase subunit tim44, mitochondrial precursor (CNF03880) partial mRNA Length = 1426 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 aaaggaggagattgagaagaa 496 ||||||||||||||||||||| Sbjct: 244 aaaggaggagattgagaagaa 264
>gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, complete sequence Length = 188819 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 ctctgaggttctgaaggaaaa 379 ||||||||||||||||||||| Sbjct: 12481 ctctgaggttctgaaggaaaa 12501
>ref|XM_847597.1| PREDICTED: Canis familiaris similar to podocan, transcript variant 2 (LOC479564), mRNA Length = 2633 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1360 aggagattgagaagaagcttg 1380
>ref|XM_861055.1| PREDICTED: Canis familiaris similar to podocan, transcript variant 6 (LOC479564), mRNA Length = 2624 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1351 aggagattgagaagaagcttg 1371
>ref|XM_861039.1| PREDICTED: Canis familiaris similar to podocan, transcript variant 5 (LOC479564), mRNA Length = 2627 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1354 aggagattgagaagaagcttg 1374
>ref|XM_861004.1| PREDICTED: Canis familiaris similar to podocan, transcript variant 4 (LOC479564), mRNA Length = 3107 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1351 aggagattgagaagaagcttg 1371
>ref|XM_860991.1| PREDICTED: Canis familiaris similar to podocan, transcript variant 3 (LOC479564), mRNA Length = 2624 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1351 aggagattgagaagaagcttg 1371
>gb|AC164123.4| Mus musculus BAC clone RP24-390M17 from chromosome 9, complete sequence Length = 130985 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 68243 aggagattgagaagaagcttg 68263
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 9 gacgctgctcgcgctcggcctcgaccgcg 37 ||||| |||| |||||||||||||||||| Sbjct: 3027440 gacgcagctcacgctcggcctcgaccgcg 3027412
>gb|AC098654.2| Homo sapiens chromosome 1 clone RP11-475O6, complete sequence Length = 159975 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 ttctgaaggaaaacctggaag 387 ||||||||||||||||||||| Sbjct: 153341 ttctgaaggaaaacctggaag 153361
>gb|AC126365.5| Homo sapiens chromosome 17, clone RP11-283C24, complete sequence Length = 194265 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tgaaggaaaacctggaagcta 390 ||||||||||||||||||||| Sbjct: 5973 tgaaggaaaacctggaagcta 5953
>emb|X91787.1|LLTRNAGLN L.luteus mRNA for tRNA-glutamine synthetase Length = 2877 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 297 aagtttgaagaagcctgtggtgtaggtgt 325 |||||||||||||| |||||||| ||||| Sbjct: 502 aagtttgaagaagcttgtggtgttggtgt 530
>emb|X54030.1|LEHSC270 Lycopersicon esculentum hsc-2 mRNA for heat shock protein cognate 70 Length = 2117 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 475 caaaggaggagattgagaaga 495 ||||||||||||||||||||| Sbjct: 1622 caaaggaggagattgagaaga 1642
>gb|AC087499.12| Homo sapiens chromosome 17, clone RP11-218E15, complete sequence Length = 195591 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tgaaggaaaacctggaagcta 390 ||||||||||||||||||||| Sbjct: 71484 tgaaggaaaacctggaagcta 71464
>gb|BC034613.1| Mus musculus, sterol carrier protein 2, liver, clone MGC:29961 IMAGE:5123611, mRNA, complete cds Length = 1980 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1334 aggagattgagaagaagcttg 1354
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 53 gctggtcaatagcaaggtcaccgcc 77 ||||||||| ||||||||||||||| Sbjct: 1940051 gctggtcaacagcaaggtcaccgcc 1940075
>dbj|AK002425.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610009N04 product:sterol carrier protein 2, liver, full insert sequence Length = 1371 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 132 aggagattgagaagaagcttg 152
>gb|BC103370.1| Bos taurus sterol carrier protein 2, mRNA (cDNA clone MGC:127405 IMAGE:7950005), complete cds Length = 2641 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1373 aggagattgagaagaagcttg 1393
>ref|NG_001457.1| Mus musculus sterol carrier protein 2, pseudogene 2 (Scp2-ps2) on chromosome 9 Length = 667 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 333 aggagattgagaagaagcttg 353
>dbj|AK004860.2| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300002N20 product:sterol carrier protein 2, liver, full insert sequence Length = 1974 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1343 aggagattgagaagaagcttg 1363
>dbj|AB178525.1| Ambystoma mexicanum mRNA for DNA polymerase alpha catalytic subunit, partial cds Length = 4742 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 295 ggaagtttgaagaagcctgtggtgt 319 |||| |||||||||||||||||||| Sbjct: 127 ggaaatttgaagaagcctgtggtgt 151
>gb|AC103595.2| Homo sapiens chromosome 1 clone RP11-415P10, complete sequence Length = 122000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 ttctgaaggaaaacctggaag 387 ||||||||||||||||||||| Sbjct: 36746 ttctgaaggaaaacctggaag 36766
>dbj|AP002038.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K20M4 Length = 25790 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 548 gaaaaagaagaaggagaaacc 568 ||||||||||||||||||||| Sbjct: 17688 gaaaaagaagaaggagaaacc 17708
>gb|BC018384.1| Mus musculus sterol carrier protein 2, liver, mRNA (cDNA clone MGC:11534 IMAGE:3710340), complete cds Length = 2626 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1368 aggagattgagaagaagcttg 1388
>emb|Z81080.1|CEF39H2 Caenorhabditis elegans Cosmid F39H2, complete sequence Length = 17652 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 gtgaaaaagaagaaggagaaa 566 ||||||||||||||||||||| Sbjct: 10070 gtgaaaaagaagaaggagaaa 10050
>emb|AL844206.20| Mouse DNA sequence from clone RP23-84A23 on chromosome 4, complete sequence Length = 134866 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 25720 aggagattgagaagaagcttg 25700
>dbj|AP006356.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT06I08, TM0082b, complete sequence Length = 93398 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 aacaaaggaggagattgagaa 493 ||||||||||||||||||||| Sbjct: 6751 aacaaaggaggagattgagaa 6731
>dbj|AP006080.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT48M22, TM0118c, complete sequence Length = 91116 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 aaaaccagtgaaaaagaagaa 559 ||||||||||||||||||||| Sbjct: 54447 aaaaccagtgaaaaagaagaa 54427
>ref|NM_001033990.2| Bos taurus sterol carrier protein 2 (SCP2), mRNA Length = 2641 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1373 aggagattgagaagaagcttg 1393
>emb|X87685.1|MMSCP2PS2 M.musculus sterol carrier protein 2-pseudogene Length = 667 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 333 aggagattgagaagaagcttg 353
>gb|M62361.1|MUSSCPM Mus musculus sterol carrier protein-2 (SCP-2) gene, complete cds Length = 785 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 318 aggagattgagaagaagcttg 338
>gb|M91458.1|MUSSCP Mus musculus sterol-carrier protein X mRNA, complete cds Length = 2152 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 aggagattgagaagaagcttg 501 ||||||||||||||||||||| Sbjct: 1328 aggagattgagaagaagcttg 1348
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 10 acgctgctcgcgctcggcctcgaccgcg 37 |||| |||| |||||||||||||||||| Sbjct: 2363080 acgcagctcacgctcggcctcgaccgcg 2363053
>ref|NM_192036.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 723 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aagtttgaagaagcctgtgg 316 |||||||||||||||||||| Sbjct: 525 aagtttgaagaagcctgtgg 506
>gb|AC024804.1| Caenorhabditis elegans cosmid Y51H7BR, complete sequence Length = 22392 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 acataaatgttggtggccta 428 |||||||||||||||||||| Sbjct: 9722 acataaatgttggtggccta 9703
>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence Length = 167235 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 aaaaccagtgaaaaagaagaagga 562 |||||||||||||| ||||||||| Sbjct: 76096 aaaaccagtgaaaacgaagaagga 76073
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 543 ccagtgaaaaagaagaaggagaaa 566 |||||||||||||||| ||||||| Sbjct: 1283950 ccagtgaaaaagaagagggagaaa 1283927
>gb|AC091483.6| Trypanosoma brucei chromosome 3 clone RPCI93-48K5, complete sequence Length = 161296 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 543 ccagtgaaaaagaagaaggagaaa 566 |||||||||||||||| ||||||| Sbjct: 9662 ccagtgaaaaagaagagggagaaa 9639
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctgctcgcgctcggcctcga 32 |||||||||||||||||||| Sbjct: 690826 ctgctcgcgctcggcctcga 690807
>gb|AY657933.1| Synthetic construct Peudomonas aeruginosa clone FLH045930.01F PA3811 gene, partial cds Length = 522 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gagacgctgctcgcgctcgg 26 |||||||||||||||||||| Sbjct: 147 gagacgctgctcgcgctcgg 128
>gb|AY325502.1| Aplysia californica synaptotagmin I VQ/C2B-beta splice variant mRNA, exon C2B and complete cds, alternatively spliced Length = 1287 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 533 caatgtaaaaccagtgaaaaagaagaag 560 ||||| ||||| |||||||||||||||| Sbjct: 996 caatggaaaacgagtgaaaaagaagaag 1023
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctgctcgcgctcggcctcga 32 |||||||||||||||||||| Sbjct: 1215296 ctgctcgcgctcggcctcga 1215277
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gccgagaacgcgctggtcaa 61 |||||||||||||||||||| Sbjct: 1901642 gccgagaacgcgctggtcaa 1901661
>gb|AC107454.12| Mus musculus chromosome 3, clone RP23-339P23, complete sequence Length = 199324 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 atgtaaaaccagtgaaaaagaagaaggagaaa 566 |||||||||||| ||||||||| |||||||| Sbjct: 155564 atgtaaaaccagagaaaaagaaagaggagaaa 155533
>gb|AY314771.1| Caenorhabditis elegans latrophilin-like protein LAT-1B mRNA, complete cds, alternatively spliced Length = 3599 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 taaaaccagtgaaaaagaag 557 |||||||||||||||||||| Sbjct: 550 taaaaccagtgaaaaagaag 569
>gb|AY314770.1| Caenorhabditis elegans latrophilin-like protein LAT-1A mRNA, complete cds, alternatively spliced Length = 3605 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 taaaaccagtgaaaaagaag 557 |||||||||||||||||||| Sbjct: 556 taaaaccagtgaaaaagaag 575
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gctcgcgctcggcctcgacc 34 |||||||||||||||||||| Sbjct: 182758 gctcgcgctcggcctcgacc 182739
>emb|Z54306.1|CEB0457 Caenorhabditis elegans Cosmid B0457, complete sequence Length = 40634 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 taaaaccagtgaaaaagaag 557 |||||||||||||||||||| Sbjct: 18756 taaaaccagtgaaaaagaag 18775
>gb|AC122537.4| Mus musculus BAC clone RP24-548A15 from chromosome 7, complete sequence Length = 195987 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ctgtctctgaggttctgaag 374 |||||||||||||||||||| Sbjct: 67099 ctgtctctgaggttctgaag 67118
>gb|AC112152.4| Mus musculus BAC clone RP24-93F24 from chromosome 1, complete sequence Length = 198308 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 aggaggagattgagaagaag 497 |||||||||||||||||||| Sbjct: 18393 aggaggagattgagaagaag 18412
>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence Length = 204795 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 aagttgaggagaaaaaggtt 593 |||||||||||||||||||| Sbjct: 113275 aagttgaggagaaaaaggtt 113256
>ref|XM_660303.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50063) partial mRNA Length = 1425 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ctggaagctatattggagca 400 |||||||||||||||||||| Sbjct: 181 ctggaagctatattggagca 200
>gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 map 1, complete sequence Length = 191415 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 aggaggagattgagaagaag 497 |||||||||||||||||||| Sbjct: 181089 aggaggagattgagaagaag 181108
>gb|AC157764.4| Mus musculus chromosome 3, clone RP24-238B5, complete sequence Length = 146564 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 535 atgtaaaaccagtgaaaaagaagaaggagaaa 566 |||||||||||| ||||||||| |||||||| Sbjct: 61117 atgtaaaaccagagaaaaagaaagaggagaaa 61086
>emb|X71995.1|NDVFPA Newcastle disease virus RNA for fusion protein Length = 1690 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ctgctctcattagctacatcgttt 213 |||||||||||| ||||||||||| Sbjct: 1506 ctgctctcattacctacatcgttt 1529
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ctgctcgcgctcggcctcgaccgc 36 |||| ||||||||||||||||||| Sbjct: 4038691 ctgcgcgcgctcggcctcgaccgc 4038668
>gb|AC157100.10| Mus musculus 6 BAC RP24-459E13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 192228 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 aagttgaggagaaaaaggtt 593 |||||||||||||||||||| Sbjct: 85480 aagttgaggagaaaaaggtt 85499
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctgctcgcgctcggcctcga 32 |||||||||||||||||||| Sbjct: 1118206 ctgctcgcgctcggcctcga 1118187
>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence Length = 248060 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 aagttgaggagaaaaaggtt 593 |||||||||||||||||||| Sbjct: 191149 aagttgaggagaaaaaggtt 191130
>ref|NM_001014317.1| Danio rerio zgc:113358 (zgc:113358), mRNA Length = 2320 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 aaaagttgaggagaaaaagg 591 |||||||||||||||||||| Sbjct: 621 aaaagttgaggagaaaaagg 640
>gb|AC115393.5| Rattus norvegicus BAC CH230-103E13 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 243316 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 caatgtaaaaccagtgaaaaagaa 556 ||||||||||||| |||||||||| Sbjct: 89892 caatgtaaaaccattgaaaaagaa 89869
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gctcgcgctcggcctcgacc 34 |||||||||||||||||||| Sbjct: 1897484 gctcgcgctcggcctcgacc 1897465
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 agctacatcgtttcgaccaa 220 |||||||||||||||||||| Sbjct: 3519524 agctacatcgtttcgaccaa 3519543
>gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome 9, complete sequence Length = 160712 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gtttgaagaagcctgtggtg 318 |||||||||||||||||||| Sbjct: 32487 gtttgaagaagcctgtggtg 32506
>ref|NM_001026726.1| Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds Length = 480 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 taaaaccagtgaaaaagaag 557 |||||||||||||||||||| Sbjct: 405 taaaaccagtgaaaaagaag 424
>ref|NM_182149.2| Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds Length = 3599 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 taaaaccagtgaaaaagaag 557 |||||||||||||||||||| Sbjct: 550 taaaaccagtgaaaaagaag 569
>ref|NM_063493.2| Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds Length = 3621 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 taaaaccagtgaaaaagaag 557 |||||||||||||||||||| Sbjct: 556 taaaaccagtgaaaaagaag 575
>gb|AF484090.1| Lymnaea stagnalis synaptotagmin I mRNA, complete cds, alternatively spliced Length = 1933 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 533 caatgtaaaaccagtgaaaaagaagaag 560 ||||| ||||| |||||||||||||||| Sbjct: 1096 caatggaaaacgagtgaaaaagaagaag 1123
>gb|AC004255.1|AC004255 Arabidopsis thaliana BAC T1F9 chromosome 1, complete sequence Length = 97789 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 542 accagtgaaaaagaagaaggagaa 565 ||||||||| |||||||||||||| Sbjct: 23581 accagtgaagaagaagaaggagaa 23604 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 542 accagtgaaaaagaagaaggagaa 565 ||||||||| |||||||||||||| Sbjct: 23522 accagtgaagaagaagaaggagaa 23545
>gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 of the complete genome Length = 14652 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gagacgctgctcgcgctcgg 26 |||||||||||||||||||| Sbjct: 3002 gagacgctgctcgcgctcgg 3021
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 caccgccaacctagccgccgtcgt 94 |||||||| ||||||||||||||| Sbjct: 58504 caccgccaccctagccgccgtcgt 58481
>gb|AF140228.2| Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds Length = 2574 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tgagaagaagcttgctgaga 507 |||||||||||||||||||| Sbjct: 2138 tgagaagaagcttgctgaga 2119
>gb|AY094355.1| Acinetobacter baumannii strain 19606 anthranilate synthase component I (trpE) gene, complete cds Length = 1832 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 ctacatcgtttcgaccaagatcaa 226 ||||||||||||| |||||||||| Sbjct: 1197 ctacatcgtttcgcccaagatcaa 1174
>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144G04 Length = 194459 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aagtttgaagaagcctgtgg 316 |||||||||||||||||||| Sbjct: 129060 aagtttgaagaagcctgtgg 129079
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tcgcgctcggcctcgaccgc 36 |||||||||||||||||||| Sbjct: 4850784 tcgcgctcggcctcgaccgc 4850765
>gb|BC091997.1| Danio rerio zgc:113358, mRNA (cDNA clone MGC:113358 IMAGE:7151847), complete cds Length = 2320 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 aaaagttgaggagaaaaagg 591 |||||||||||||||||||| Sbjct: 621 aaaagttgaggagaaaaagg 640
>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 107527 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 473 aacaaaggaggagattgagaagaagctt 500 ||||||||||||||| ||||||||||| Sbjct: 78759 aacaaaggaggagatatagaagaagctt 78732
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctgctcgcgctcggcctcga 32 |||||||||||||||||||| Sbjct: 932604 ctgctcgcgctcggcctcga 932585
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 cggcctcgaccgcgcacggc 43 |||||||||||||||||||| Sbjct: 4461073 cggcctcgaccgcgcacggc 4461054
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctgctcgcgctcggcctcga 32 |||||||||||||||||||| Sbjct: 2457453 ctgctcgcgctcggcctcga 2457434
>gb|M33855.1|NDVNDVF Newcastle disease virus fusion protein F-0 (NDFF) gene, complete cds Length = 2340 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ctgctctcattagctacatcgttt 213 |||||||||||| ||||||||||| Sbjct: 1926 ctgctctcattacctacatcgttt 1949
>gb|M17710.1|NDVFA Newcastle disease virus (NDV) fusion protein (F) mRNA, complete cds Length = 1787 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ctgctctcattagctacatcgttt 213 |||||||||||| ||||||||||| Sbjct: 1542 ctgctctcattacctacatcgttt 1565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,385,366 Number of Sequences: 3902068 Number of extensions: 5385366 Number of successful extensions: 132160 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130425 Number of HSP's gapped (non-prelim): 1729 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)