>PAO_ARATH (Q9FYC2) Pheophorbide a oxygenase, chloroplast precursor (EC|
           1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell
           death 1) (Lethal leaf-spot 1 homolog) (Lls1)
          Length = 537

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 11/183 (6%)
 Frame = +1

Query: 4   EIDDPSFVTVYGVRDLPYGYDVLVENLMDPAHVPYAHKGLMGKLRKKEDPGRVEFDVEGG 183
           + D P F TV   RDL YGYD L+EN+ DP+H+ +AH  + G+ R +  P  + F VE  
Sbjct: 221 DFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR-RDRAKP--LPFKVESS 277

Query: 184 GPVKMKIAEADIAGFLSEQDNSGYF--RYVAPCTFYGSPLXXXXXXXXXXXXXXXQFMLV 357
           GP           GF    D+S     ++VAPC                      Q  ++
Sbjct: 278 GP----------WGFQGANDDSPRITAKFVAPCYSMNK-----IELDAKLPIVGNQKWVI 322

Query: 358 FMC---VPVSPGKSRVIWAFPRNI------GVWLDKVIPRWYYHIGQNAILDSDIYLLHI 510
           ++C   +P++PGK+R I    RN       G    +V+PRWY H   N + D D+ +L  
Sbjct: 323 WICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQG 382

Query: 511 EER 519
           +E+
Sbjct: 383 QEK 385

>CAO_ARATH (Q9MBA1) Chlorophyllide a oxygenase, chloroplast precursor (EC|
           1.-.-.-) (Chlorophyll a oxygenase) (Chlorophyll b
           synthase)
          Length = 536

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 40  VRDLPYGYDVLVENLMDPAHVPYAHKGLMGK 132
           V DLP  + +L++NL+D AH P+ H     K
Sbjct: 348 VMDLPVEHGLLLDNLLDLAHAPFTHTSTFAK 378

>VANA_PSEUH (O05616) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)|
           (4-hydroxy-3-methoxybenzoate demethylase)
          Length = 354

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 10  DDPSFVTVYGVRDLPYGYDVLVENLMDPAHVPYAHKGLMGKLRKKEDPGRVEFDVEG 180
           D+P +    G+  +   Y ++++NLMD  H  Y H   +G  +K+ D   V   VEG
Sbjct: 127 DNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIG--QKEIDEAPVSTRVEG 181

>TSP4_BRARE (Q8JGW0) Thrombospondin-4 precursor (Thbs4)|
          Length = 949

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456
           R++W  PRN+G W DKV  RWY
Sbjct: 853 RLLWKDPRNVG-WKDKVSYRWY 873

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 511 RCGGGRCLS-PG*RSGRCGSTTAV*PCRARRRCSSG 407
           RC  GRC+  PG     CGS      CR R RC +G
Sbjct: 413 RCEDGRCVCWPGYTGTDCGSRACPRDCRGRGRCENG 448



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 511 RCGGGRCL-SPG*RSGRCGSTTAV*PCRARRRCSSG 407
           RC GGRC+  PG     CG  +    C  R RC +G
Sbjct: 258 RCEGGRCVCDPGYTGDDCGMRSCPRGCSQRGRCENG 293



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 511 RCGGGRCLS-PG*RSGRCGSTTAV*PCRARRRCSSG 407
           RC  GRC+  PG     CG+      CR R RC  G
Sbjct: 475 RCESGRCMCWPGYTGRDCGTRACPGDCRGRGRCVDG 510



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 511 RCGGGRCLS-PG*RSGRCGSTTAV*PCRARRRCSSG 407
           RC  GRC+  PG     C + T    CR R RC  G
Sbjct: 351 RCVDGRCVCWPGYTGEDCSTRTCPRDCRGRGRCEDG 386



 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -3

Query: 511 RCGGGRCL-SPG*RSGRCGSTTAV*PCRARRRCSSG 407
           RC  GRCL  PG     C +      CR R RC  G
Sbjct: 630 RCEEGRCLCDPGYTGPTCATRMCPADCRGRGRCVQG 665

>VANA_PSES9 (P12609) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)|
           (4-hydroxy-3-methoxybenzoate demethylase)
          Length = 329

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +1

Query: 10  DDPSFVTVYGVRDLPYGYDVLVENLMDPAHVPYAHKGLMGKLRKKEDPGRVEFDVEGGGP 189
           ++P++    G+  +   Y ++++NLMD  H  Y H   +G  +K+ D   V   VEG   
Sbjct: 104 ENPAWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIG--QKEIDEAPVSTRVEGDRL 161

Query: 190 VKMKIAEADIA 222
           +  +  E  +A
Sbjct: 162 ITGRFMEGILA 172

>TSP3_BRARE (Q8JHW2) Thrombospondin-3 precursor (Thbs3)|
          Length = 962

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
 Frame = +1

Query: 382  GKSRVIWAFPRNIGVWLDKVIPRW---------YYHI----GQNAILDSDIYL 501
            G+ +++W  PRN+G WLDK   RW         Y  +    G   + DSD+ +
Sbjct: 862  GEVKLLWKDPRNVG-WLDKTSYRWQLSHRPQVGYIRVKLYEGSEMVADSDVVI 913

>TSP2_HUMAN (P35442) Thrombospondin-2 precursor|
          Length = 1172

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 376  SPGKSRVIWAFPRNIGVWLDKVIPRWY 456
            +PG+ R +W  PRNIG W D    RW+
Sbjct: 1088 TPGQVRTLWHDPRNIG-WKDYTAYRWH 1113

>TSP3_HUMAN (P49746) Thrombospondin-3 precursor|
          Length = 956

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 376 SPGKSRVIWAFPRNIGVWLDKVIPRW 453
           +P + R++W  PRN+G W DK   RW
Sbjct: 855 TPDQVRLLWTDPRNVG-WRDKTSYRW 879

>TSP4_XENLA (Q06441) Thrombospondin-4 precursor|
          Length = 955

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456
           R++W  PRN+G W DKV  RW+
Sbjct: 861 RLLWKDPRNVG-WKDKVSYRWF 881

>SKI3_YEAST (P17883) Superkiller 3 protein|
          Length = 1432

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 391  RVIWAFPRNIGVW--LDKVIPRWYYHIGQNAILDSDIYLLHIEERN 522
            R  + FP N+ VW  LDK I R     GQN +   ++  L+ E +N
Sbjct: 1362 RSAYFFPNNLKVWERLDKNIQRRIASNGQNKVTAEEMSKLYCESKN 1407

>TSP2_CHICK (P35440) Thrombospondin-2 precursor|
          Length = 1178

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 376  SPGKSRVIWAFPRNIGVWLDKVIPRWY 456
            +PG+ R +W  P+NIG W D    RW+
Sbjct: 1094 TPGQVRTLWHDPKNIG-WKDYTAYRWH 1119

>COMP_BOVIN (P35445) Cartilage oligomeric matrix protein (COMP) (Fragment)|
          Length = 439

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
 Frame = +1

Query: 391 RVIWAFPRNIGVWLDKVIPRWY-------------YHIGQNAILDSDIYL 501
           R++W  PRN+G W DK   RW+             ++ G   + DS++ L
Sbjct: 347 RLLWKDPRNVG-WKDKTSYRWFLQHRPQVGYIRVRFYEGPELVADSNVIL 395

>CHMO_ARATH (Q9SZR0) Probable choline monooxygenase, chloroplast precursor (EC|
           1.14.15.7)
          Length = 422

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 61  YDVLVENLMDPA-HVPYAHKGLMGKL 135
           + V  +N +D   HVPYAHKGLM  L
Sbjct: 256 WKVFCDNYLDGGYHVPYAHKGLMSGL 281

>COMP_RAT (P35444) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
 Frame = +1

Query: 391 RVIWAFPRNIGVWLDKVIPRWY-------------YHIGQNAILDSDIYL 501
           R++W  PRN+G W DK   RW+             ++ G   + DS++ L
Sbjct: 663 RLLWKDPRNVG-WKDKTSYRWFLQHRPQVGYIRVRFYEGPELVADSNVVL 711

>COMP_MOUSE (Q9R0G6) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
 Frame = +1

Query: 391 RVIWAFPRNIGVWLDKVIPRWY-------------YHIGQNAILDSDIYL 501
           R++W  PRN+G W DK   RW+             ++ G   + DS++ L
Sbjct: 663 RLLWKDPRNVG-WKDKTSYRWFLQHRPQVGYIRVRFYEGPELVADSNVVL 711

>GLGB_SOLTU (P30924) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Starch|
           branching enzyme) (Q-enzyme)
          Length = 861

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 370 PVSPGKSRVIWAFPRNIGVWLDKVIPRW 453
           PV P  SRV + F    GVW+D+ IP W
Sbjct: 199 PVIPHNSRVKFRFKHGNGVWVDR-IPAW 225

>SEM5A_HUMAN (Q13591) Semaphorin-5A precursor (Semaphorin F) (Sema F)|
          Length = 1074

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
 Frame = -3

Query: 517 APRCGGGRCLSPG*RSGRCGST------TAV*PCRA---------RRRCSSGTPR 398
           AP+CGG +C  PG     C         T+  PC           +R CS+ TPR
Sbjct: 574 APQCGGWQCEGPGMEIANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPR 628

>PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 453 PPRYDLVEPDADVPRERPDHPALPRRHRDAHEHQHE 346
           PP Y+  +P A+ P   P   A P  H   H H H+
Sbjct: 17  PPPYNAPQPPAEPPAPPPQ--AAPSSHHHHHHHYHQ 50

>Y3568_PSEAE (P28812) Hypothetical protein PA3568|
          Length = 628

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 355 VFMCVPVSPGKSRVIWA-FPRNIGVWLDKVIPRWYYHIGQNAILDSD--IYLL 504
           + + +P+ PG ++ +W   PR +  +L       YYH G    LD D  +Y++
Sbjct: 441 IVIALPLPPGCAQTLWGDHPRYLQAYLGNY--PGYYHTGDGGYLDEDGFVYIM 491

>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 236 SDRNPAISASAIFIFTGPPPSTSNSTLPGSSFL----RSLPMSPLCA*GTCAGSMRFSTS 69
           +++NP +S S  + +   PP   N+T PG++ +     + P  P     T  G+   +TS
Sbjct: 263 TNKNPKMSRSVGYSYPSLPPGYQNTTPPGATGVPPSSLNYPSGPQAFTQTPLGANHLTTS 322

Query: 68  TSYP*GRSLTP 36
            S   G SL P
Sbjct: 323 MS---GLSLQP 330

>COMP_HUMAN (P49747) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 757

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
 Frame = +1

Query: 391 RVIWAFPRNIGVWLDKVIPRWY-------------YHIGQNAILDSDIYL 501
           R++W  PRN+G W DK   RW+             ++ G   + DS++ L
Sbjct: 665 RLLWKDPRNVG-WKDKKSYRWFLQHRPQVGYIRVRFYEGPELVADSNVVL 713

>GLNE_VIBCH (Q9KPD4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 948

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
 Frame = +1

Query: 61  YDVLVENLMDPAHV--PYAHKGLMGKLRK------KEDPGRVEFDVEGGGPVK----MKI 204
           Y +L++ L+DP H+  P   +    +LR       +ED   +E  +EG    K    ++I
Sbjct: 576 YPILLDELIDPQHLYNPIPLESYQTELRDFLARIPEED---MEQQMEGLRQFKQISILRI 632

Query: 205 AEADIAGFLSEQDNSGYFRYVA 270
           A ADIAG L     S +  Y+A
Sbjct: 633 AAADIAGVLPVMKVSDHLTYLA 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,244,539
Number of Sequences: 219361
Number of extensions: 1429261
Number of successful extensions: 5086
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5068
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)