ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal7c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 90 7e-15
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 7e-15
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 90 7e-15
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
5dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
6gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.36
7gb|AY105790.1| Zea mays PCO079761 mRNA sequence 44 0.36
8gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, compl... 42 1.4
9gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.4
10gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosom... 40 5.6
11gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 40 5.6
12gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds 40 5.6
13emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
14gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clo... 40 5.6
15dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 5.6
16dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 5.6
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
18ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA 40 5.6
19emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chr... 40 5.6 
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                       
Query: 5   ccatacagttacagaaggcggaggtcatgctcccatgaccgttatgtttcagcatactac 64
           |||||| ||||||||||   ||||||||| ||| |||||| || ||||||| ||||||| 
Sbjct: 673 ccataccgttacagaagagagaggtcatgttcctatgaccattctgtttcaccatactat 732

                                                                       
Query: 65  agcaggcgctattctccaaggaacagaagacggagttactctcgcagcgtatcaccacgc 124
           || ||| |||||||||||||    ||| ||||||| || |||||||| |||||||| |  
Sbjct: 733 agaaggtgctattctccaagtgctagaggacggagctattctcgcagtgtatcacctcag 792

                                    
Query: 125 aggagctactcccgtagctgctccc 149
           ||||||||||||| |||||| ||||
Sbjct: 793 aggagctactcccatagctgttccc 817



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                       
Query: 236 aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 295
           ||||||| |||||| || |||||  | |||||||||||||| | ||| ||||| ||||||
Sbjct: 898 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 957

                       
Query: 296 agggagcgctca 307
           ||||||||||||
Sbjct: 958 agggagcgctca 969
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                           
Query: 5       ccatacagttacagaaggcggaggtcatgctcccatgaccgttatgtttcagcatactac 64
               |||||| ||||||||||   ||||||||| ||| |||||| || ||||||| ||||||| 
Sbjct: 8740422 ccataccgttacagaagagagaggtcatgttcctatgaccattctgtttcaccatactat 8740363

                                                                           
Query: 65      agcaggcgctattctccaaggaacagaagacggagttactctcgcagcgtatcaccacgc 124
               || ||| |||||||||||||    ||| ||||||| || |||||||| |||||||| |  
Sbjct: 8740362 agaaggtgctattctccaagtgctagaggacggagctattctcgcagtgtatcacctcag 8740303

                                        
Query: 125     aggagctactcccgtagctgctccc 149
               ||||||||||||| |||||| ||||
Sbjct: 8740302 aggagctactcccatagctgttccc 8740278



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                           
Query: 236     aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 295
               ||||||| |||||| || |||||  | |||||||||||||| | ||| ||||| ||||||
Sbjct: 8740197 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 8740138

                           
Query: 296     agggagcgctca 307
               ||||||||||||
Sbjct: 8740137 agggagcgctca 8740126
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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                         
Query: 5     ccatacagttacagaaggcggaggtcatgctcccatgaccgttatgtttcagcatactac 64
             |||||| ||||||||||   ||||||||| ||| |||||| || ||||||| ||||||| 
Sbjct: 84073 ccataccgttacagaagagagaggtcatgttcctatgaccattctgtttcaccatactat 84014

                                                                         
Query: 65    agcaggcgctattctccaaggaacagaagacggagttactctcgcagcgtatcaccacgc 124
             || ||| |||||||||||||    ||| ||||||| || |||||||| |||||||| |  
Sbjct: 84013 agaaggtgctattctccaagtgctagaggacggagctattctcgcagtgtatcacctcag 83954

                                      
Query: 125   aggagctactcccgtagctgctccc 149
             ||||||||||||| |||||| ||||
Sbjct: 83953 aggagctactcccatagctgttccc 83929



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                         
Query: 236   aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 295
             ||||||| |||||| || |||||  | |||||||||||||| | ||| ||||| ||||||
Sbjct: 83848 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 83789

                         
Query: 296   agggagcgctca 307
             ||||||||||||
Sbjct: 83788 agggagcgctca 83777
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                           
Query: 5       ccatacagttacagaaggcggaggtcatgctcccatgaccgttatgtttcagcatactac 64
               |||||| ||||||||||   ||||||||| ||| |||||| || ||||||| ||||||| 
Sbjct: 8738257 ccataccgttacagaagagagaggtcatgttcctatgaccattctgtttcaccatactat 8738198

                                                                           
Query: 65      agcaggcgctattctccaaggaacagaagacggagttactctcgcagcgtatcaccacgc 124
               || ||| |||||||||||||    ||| ||||||| || |||||||| |||||||| |  
Sbjct: 8738197 agaaggtgctattctccaagtgctagaggacggagctattctcgcagtgtatcacctcag 8738138

                                        
Query: 125     aggagctactcccgtagctgctccc 149
               ||||||||||||| |||||| ||||
Sbjct: 8738137 aggagctactcccatagctgttccc 8738113



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                           
Query: 236     aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 295
               ||||||| |||||| || |||||  | |||||||||||||| | ||| ||||| ||||||
Sbjct: 8738032 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 8737973

                           
Query: 296     agggagcgctca 307
               ||||||||||||
Sbjct: 8737972 agggagcgctca 8737961
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>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
            insert sequence
          Length = 1438

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                        
Query: 5    ccatacagttacagaaggcggaggtcatgctcccatgaccgttatgtttcagcatactac 64
            |||||| ||||||||||   ||||||||| ||| |||||| || ||||||| ||||||| 
Sbjct: 932  ccataccgttacagaagagagaggtcatgttcctatgaccattctgtttcaccatactat 991

                                                                        
Query: 65   agcaggcgctattctccaaggaacagaagacggagttactctcgcagcgtatcaccacgc 124
            || ||| |||||||||||||    ||| ||||||| || |||||||| |||||||| |  
Sbjct: 992  agaaggtgctattctccaagtgctagaggacggagctattctcgcagtgtatcacctcag 1051

                                     
Query: 125  aggagctactcccgtagctgctccc 149
            ||||||||||||| |||||| ||||
Sbjct: 1052 aggagctactcccatagctgttccc 1076



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                        
Query: 236  aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 295
            ||||||| |||||| || |||||  | |||||||||||||| | ||| ||||| ||||||
Sbjct: 1157 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 1216

                        
Query: 296  agggagcgctca 307
            ||||||||||||
Sbjct: 1217 agggagcgctca 1228
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 200    agcaaggcatcgcgcagcaggtcacc 225
              |||||||||||||||| |||||||||
Sbjct: 352179 agcaaggcatcgcgcaccaggtcacc 352154
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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 266  agccgcagttcatgctcgaggtccgtctccagggagcgctca 307
            ||||||||||| | ||| ||||| || |||||||||||||||
Sbjct: 1219 agccgcagttcgtactccaggtctgtgtccagggagcgctca 1260
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>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence
          Length = 162258

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    agaagaatcaaggagctgttc 177
              |||||||||||||||||||||
Sbjct: 102941 agaagaatcaaggagctgttc 102961
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 304     ctcaacctcatcaagcacctg 324
               |||||||||||||||||||||
Sbjct: 1782677 ctcaacctcatcaagcacctg 1782657
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>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete
             sequence
          Length = 237281

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aggaacagaagacggagtta 102
             ||||||||||||||||||||
Sbjct: 94040 aggaacagaagacggagtta 94059
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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  gcagaaaggatatgctgaaa 200
            ||||||||||||||||||||
Sbjct: 3519 gcagaaaggatatgctgaaa 3500
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>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aggaacagaagacggagtta 102
            ||||||||||||||||||||
Sbjct: 1608 aggaacagaagacggagtta 1627
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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 336   agtgccttgatgactttggatgtt 359
             ||||||||||||||||| ||||||
Sbjct: 55774 agtgccttgatgacttttgatgtt 55797
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>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593
            IMAGE:30059745), complete cds
          Length = 3683

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aggaacagaagacggagtta 102
            ||||||||||||||||||||
Sbjct: 3207 aggaacagaagacggagtta 3226
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>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030013K10 product:hypothetical protein,
           full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  aggaacagaagacggagtta 102
           ||||||||||||||||||||
Sbjct: 4   aggaacagaagacggagtta 23
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>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4833426I20 product:lysyl oxidase-like 4,
           full insert sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  aggaacagaagacggagtta 102
           ||||||||||||||||||||
Sbjct: 968 aggaacagaagacggagtta 987
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 336      agtgccttgatgactttggatgtt 359
                ||||||||||||||||| ||||||
Sbjct: 18963850 agtgccttgatgacttttgatgtt 18963873
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>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA
          Length = 3683

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aggaacagaagacggagtta 102
            ||||||||||||||||||||
Sbjct: 3207 aggaacagaagacggagtta 3226
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>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
              sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 181    gcagaaaggatatgctgaaagcaa 204
              ||||| ||||||||||||||||||
Sbjct: 156224 gcagagaggatatgctgaaagcaa 156247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,690,857
Number of Sequences: 3902068
Number of extensions: 2690857
Number of successful extensions: 49955
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49829
Number of HSP's gapped (non-prelim): 121
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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