>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 287

 Score = 96.7 bits (239), Expect(2) = 3e-25
 Identities = 52/72 (72%), Positives = 55/72 (76%)
 Frame = +2

Query: 386 ARGIPCESARTTLQG*ILLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGF 565
           A  +P   A T +     LKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQYD VFALGF
Sbjct: 54  AGDVPPTVAETKMN---FLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGF 110

Query: 566 VTVYDQLMGRVP 601
           VTVYDQLM   P
Sbjct: 111 VTVYDQLMEGYP 122



 Score = 38.1 bits (87), Expect(2) = 3e-25
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 585 LWEGYPSNEDRDAIFKSY 638
           L EGYPSNEDRDAIFK+Y
Sbjct: 117 LMEGYPSNEDRDAIFKAY 134

>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 293

 Score = 92.8 bits (229), Expect(2) = 8e-23
 Identities = 42/56 (75%), Positives = 49/56 (87%)
 Frame = +2

Query: 440 LKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMGRVPQQ 607
           L +YKRPIP++Y+TVLQEL+VQQHL RYK +YQYDPVFALGFVTVYDQLM   P +
Sbjct: 76  LTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSE 131



 Score = 33.9 bits (76), Expect(2) = 8e-23
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 585 LWEGYPSNEDRDAIFKSY 638
           L EGYPS EDR+AIFK+Y
Sbjct: 124 LMEGYPSEEDRNAIFKAY 141

>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 300

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 46/57 (80%), Positives = 51/57 (89%)
 Frame = +2

Query: 440 LKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMGRVPQQR 610
           LK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+YDPVFALGFVTVYDQLM   P  +
Sbjct: 75  LKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQ 131



 Score = 35.0 bits (79), Expect = 0.19
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 585 LWEGYPSNEDRDAIFKSY 638
           L EGYPS++DRDAIFK+Y
Sbjct: 123 LMEGYPSDQDRDAIFKAY 140

>THF1_SYNJB (P0C1D1) Protein thf1|
          Length = 239

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
 Frame = +2

Query: 446 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMG--RVPQQR 610
           +Y RPI ++Y  V++ELLV+ HL    ST+ YDP FALG VT+YD LM     P+QR
Sbjct: 17  AYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLMEAYHPPEQR 73

>THF1_SYNJA (Q2JSQ3) Protein thf1|
          Length = 239

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
 Frame = +2

Query: 446 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMG--RVPQQR 610
           +Y RPI + Y  V++ELLV+ HL    S + YDP FALG VT+YD LM     P+QR
Sbjct: 17  AYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLMEAYHPPEQR 73

>THF1_SYNEL (Q8DJT8) Protein thf1|
          Length = 222

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 24/48 (50%), Positives = 34/48 (70%)
 Frame = +2

Query: 446 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 589
           ++ RPI SIY   ++ELLV+ HL+R    ++Y P+FALG VT +DQ M
Sbjct: 17  AHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQFM 64

>THF1_SYNP7 (Q31MY4) Protein thf1|
          Length = 254

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = +2

Query: 446 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 589
           +Y RPI  +Y  V++ELLV+ HL+   +++ YDP+FALG VT +D  M
Sbjct: 17  AYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

>THF1_SYNP6 (Q5N664) Protein thf1|
          Length = 254

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = +2

Query: 446 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 589
           +Y RPI  +Y  V++ELLV+ HL+   +++ YDP+FALG VT +D  M
Sbjct: 17  AYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

>THF1_ANAVT (Q3M4B2) Protein thf1|
          Length = 233

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 23/64 (35%), Positives = 38/64 (59%)
 Frame = +2

Query: 449 YKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMGRVPQQRGQGCHL 628
           + RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +D+ M     +R +    
Sbjct: 18  HTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQGYQPERDKESIF 77

Query: 629 QVIC 640
             IC
Sbjct: 78  SAIC 81

>THF1_ANASP (Q8YZ41) Protein thf1|
          Length = 233

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 23/64 (35%), Positives = 38/64 (59%)
 Frame = +2

Query: 449 YKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMGRVPQQRGQGCHL 628
           + RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +D+ M     +R +    
Sbjct: 18  HTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMEGYQPERDKESIF 77

Query: 629 QVIC 640
             IC
Sbjct: 78  SAIC 81

>THF1_SYNY3 (P73956) Protein thf1|
          Length = 240

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +2

Query: 449 YKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 589
           Y RPI SIY   ++ELLV+ HL+     + YDP+FALG VT ++  M
Sbjct: 18  YSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFM 64

>THF1_GLOVI (Q7NKS7) Protein thf1|
          Length = 228

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = +2

Query: 446 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMGRVPQQRGQGCH 625
           +Y RP+ SIY  V+ ELLV+ HL+     +++DP+FA G +T Y  LM        +   
Sbjct: 17  AYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALMEGYTPVEQRDAI 76

Query: 626 LQVIC 640
           L+ +C
Sbjct: 77  LRALC 81

>THF1_SYNS9 (Q3AY05) Protein thf1|
          Length = 215

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +2

Query: 443 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQL-MGRVPQQRGQG 619
           +++   I  +Y  +  ELLV+ HL+ ++S+++  P+FA+G  TV+D    G  P++   G
Sbjct: 16  QAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSAGYRPEEHITG 75

Query: 620 CHLQVIC 640
             L  +C
Sbjct: 76  L-LDALC 81

>THF1_SYNPX (Q7U6N6) Protein thf1|
          Length = 212

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 15/47 (31%), Positives = 32/47 (68%)
 Frame = +2

Query: 443 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQ 583
           +++   I  +Y  +  ELLV+ HL+ +++T+Q + +FA+G  TV+++
Sbjct: 16  QAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFER 62

>THF1_PROMM (Q7V7R3) Protein thf1|
          Length = 243

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 461 IPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYD 580
           IPS+Y     ELLV+ HL+ ++  +  D +FA+G   V+D
Sbjct: 22  IPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFD 61

>THF1_PROMT (Q46L45) Protein thf1|
          Length = 199

 Score = 37.0 bits (84), Expect = 0.050
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +2

Query: 443 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQ 583
           K +   IP+IY  +  ELLV+ HL+ ++  ++ D +F+ G   V+ +
Sbjct: 16  KEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSK 62

>THF1_SYNSC (Q3AJN7) Protein thf1|
          Length = 215

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 14/46 (30%), Positives = 30/46 (65%)
 Frame = +2

Query: 443 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYD 580
           +++   I  +Y  +  ELLV+ HL+ ++S ++ + +F++G  TV+D
Sbjct: 16  QAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFD 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,503,020
Number of Sequences: 219361
Number of extensions: 1759736
Number of successful extensions: 4011
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4008
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)