>UPPP_LACLA (Q9CDM7) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 284

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 446 WRLWLPAICATFFSSI-----NEQLSRHFYHIINTRFSSSLFCSYFSTGSRIW 303
           WRLWL  + A   ++I     N+ L +HFYH +   F   ++   F    R W
Sbjct: 88  WRLWLKVLIAALPAAIIGLPLNDWLDKHFYHFVPVAFMLIIYGVAFIVIERRW 140

>YCF2_PHYPA (P61243) Protein ycf2|
          Length = 2259

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 411  LFINKRTIIKTLLPYYQHTVQFLSVLQLLLNGFSNLGFKS 292
            L +N   I  TLL  YQ+ +QF  + Q+LLN  +N+  K+
Sbjct: 2201 LLLNDSLIYNTLLEIYQYLLQFFILHQVLLNEMTNVLLKN 2240

>ACBD6_XENTR (Q66JD7) Acyl-CoA-binding domain-containing protein 6|
          Length = 286

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 448 GVGESLLGGRRCDGGCSLQWMEQSEKLATDLLKMAAENL 564
           GV E    G  C GGC  QW E++E+      + AA+++
Sbjct: 5   GVLEESSSGEACSGGCPEQWDEKTEEELQGQFEQAAKHV 43

>ECP3_MOUSE (O35290) Eosinophil cationic-type ribonuclease 3 precursor (MR-3)|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +3

Query: 36  LQYLAVLFPLFCCLVHGQTDHCWFARMEWNGNFTLEFLCNLLALLISRFCRSVLSLSS 209
           L  L ++  L  CL  GQT   WFA    N N  L   CN+  L I+RF R+   L++
Sbjct: 13  LLLLRLVLMLASCL--GQTPSRWFAIQHINNNTNLR--CNVEMLRINRFRRTCKGLNT 66

>ZG48_XENLA (P18723) Gastrula zinc finger protein XLCGF48.2 (Fragment)|
          Length = 647

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
 Frame = -3

Query: 438 MVTCNLCHILFINKRTIIKTLLPYYQHTVQ-----------FLSVLQLLLNGFSNLGFK- 295
           M  CN+CH  F NK  +++       HT +           F    QL L+  ++ G K 
Sbjct: 316 MFNCNVCHTAFNNKSNLVR---HQRIHTGEKPFSCSECGKCFRQSSQLFLHRRNHTGEKP 372

Query: 294 ---SDCGGLTKFR*KKFRHHSNRT 232
              S+CG   K+R    +HH   T
Sbjct: 373 FSCSECGKCFKWRSLLIKHHKTHT 396

>TRUA_BLOFL (Q7U356) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 252

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 437 WLPAICATFFSSINEQLSRHFYHIINTRFSSSLFCSYFSTGSRIWDLNQI 288
           W+  +  +F +  +    R+ Y I N R  S++FC    + SR  D+N++
Sbjct: 91  WVSEVDNSFHARFSAISRRYCYFIYNNRIRSAVFCKRVWSYSRFLDVNKM 140

>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13|
           protein) (DOA4-independent degradation protein 6)
          Length = 437

 Score = 26.2 bits (56), Expect(2) = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 502 QWMEQSEKLATDLLKMAAEN 561
           +WM +SEKL   L  MA EN
Sbjct: 205 KWMGESEKLVKQLFAMAREN 224



 Score = 22.7 bits (47), Expect(2) = 4.6
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 561 SRKVETELLVQM 596
           SR+++TELLVQM
Sbjct: 249 SRRIKTELLVQM 260

>ECP2_MOUSE (P97425) Eosinophil cationic protein 2 precursor (EC 3.1.27.-) (ECP|
           2) (Ribonuclease 3-2) (RNase 3-2) (Eosinophil secondary
           granule ribonuclease 2) (EAR-2)
          Length = 156

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +3

Query: 36  LQYLAVLFPLFCCLVHGQTDHCWFARMEWNGNFTLEFLCNLLALLISRFCRSVLSLSS 209
           L  L ++  L  CL  GQT   WFA    N N  L+  CN+    I+RF R+   L++
Sbjct: 13  LLLLGLVLMLASCL--GQTPSQWFAIQHINNNANLQ--CNVEMQRINRFRRTCKGLNT 66

>Y394_MYCGA (Q7NB85) UPF0054 protein MYCGA3940|
          Length = 168

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 203 VLKLIDVCYSVRFE*CLNFFY-LNFVSPPQS-DLNPKFEN 316
           +LK+I+ C+S  F+   N FY L+FVS  QS  LN    N
Sbjct: 25  ILKIINQCFSSHFKVKNNLFYELSFVSEKQSLQLNSSLRN 64

>GLMU_BUCBP (Q89B26) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 448

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 415 HSFHQ*TNNYQDTSTILSTHGSVPLCSAATSQRVL 311
           ++  Q  NNY+D   IL  +G VPL S  + Q++L
Sbjct: 84  NAISQIINNYKDHENILILYGDVPLISKNSIQKML 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,393,830
Number of Sequences: 219361
Number of extensions: 1828802
Number of successful extensions: 4804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4802
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)