ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal7a23 |
|---|---|
| Clone Library Name | barley_pub |
>TPPC1_MOUSE (Q5NCF2) Trafficking protein particle complex subunit 1| Length = 145 Score = 96.7 bits (239), Expect = 6e-20 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Frame = +2 Query: 50 KLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKL 229 KLM+G+LFS+RSF +K+ P + F SF+T+ YKL+Y E+P+GIK+ Sbjct: 36 KLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKV 82 Query: 230 ILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 391 ++ T G RD L HIYS LYVE+VVKNPL G ++ +LF LD YV++L Sbjct: 83 VMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>TPPC1_HUMAN (Q9Y5R8) Trafficking protein particle complex subunit 1 (BET5| homolog) (Multiple myeloma protein 2) (MUM-2) Length = 145 Score = 94.0 bits (232), Expect = 4e-19 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 1/115 (0%) Frame = +2 Query: 50 KLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKL 229 KLM+G+LFS+RSF +K+ P + F +F+T+ YKL+Y E+P+GIK+ Sbjct: 36 KLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKV 82 Query: 230 ILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 391 ++ T G RD L HIYS LYVE VVKNPL G ++ +LF LD YV++L Sbjct: 83 VMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>BET5_SCHPO (Q9UT70) Transport protein particle subunit bet5| Length = 155 Score = 77.4 bits (189), Expect = 4e-14 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 7/128 (5%) Frame = +2 Query: 29 SLATRXQKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYME 208 S+ +KL+FG++FSLR+ KI + F S+ T+ YKL++ E Sbjct: 40 SIEDDMEKLIFGVVFSLRNMVKKITADQDQ---------------FMSYTTSKYKLHFYE 84 Query: 209 SPSGIKLILLTHPRTGDQRDALKHIY-SLYVEYVVKNPLYAPGSP------IKCDLFNKH 367 +P+ ++LI +T+P+ L+ IY +LYVE+VVK+PLY P I C++F Sbjct: 85 TPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRIT 144 Query: 368 LDQYVKTL 391 LD++V+TL Sbjct: 145 LDRFVRTL 152
>TPPC4_MOUSE (Q9ES56) Trafficking protein particle complex subunit 4 (Synbindin)| (TRS23 homolog) Length = 219 Score = 64.7 bits (156), Expect = 2e-10 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = +2 Query: 128 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 304 +G+ L P QG S +T+T+KL+ ++ +GIK ++L PR L+ IY +Y ++ Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180 Query: 305 VVKNPLYAPGSPIKCDLFNKHL 370 +KNP Y+ PI+C+LF+++L Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202
>TPPC4_HUMAN (Q9Y296) Trafficking protein particle complex subunit 4 (Synbindin)| (TRS23 homolog) (Hematopoietic stem/progenitor cell protein 172) Length = 219 Score = 64.3 bits (155), Expect = 3e-10 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = +2 Query: 128 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 304 +G+ L P QG S +T+T+KL+ ++ +GIK ++L PR L+ IY +Y ++ Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180 Query: 305 VVKNPLYAPGSPIKCDLFNKHL 370 +KNP Y+ PI+C+LF+++L Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202
>BET5_YEAST (Q03630) Transport protein particle 18 kDa subunit (TRAPP 18 kDa| subunit) Length = 159 Score = 45.8 bits (107), Expect = 1e-04 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Frame = +2 Query: 2 ASGTGHSARSLATRXQKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKT 181 ASGT +S ++ KL++G++FSLRS T K+ S ++ S T Sbjct: 28 ASGTINSKQN--EEDAKLLYGMIFSLRSITQKLSKGSVKN-------------DIRSIST 72 Query: 182 NTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPL 322 Y+++ + SG+ +LL+ + L++IYS +YV+YV N L Sbjct: 73 GKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLL 120
>TRS23_YEAST (Q03784) Transport protein particle 23 kDa subunit (TRAPP 23 kDa| subunit) Length = 219 Score = 37.0 bits (84), Expect = 0.056 Identities = 15/40 (37%), Positives = 28/40 (70%) Frame = +2 Query: 272 LKHIYSLYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 391 L+ +Y LY +YV+K+P Y+ PI+ +LF++ + + V+ L Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218
>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)| Length = 140 Score = 32.7 bits (73), Expect = 1.0 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Frame = +2 Query: 176 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 343 K N + ++ + ++ I+L R Q D +K+ +Y LY+++ + NP Y P SPI Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121 Query: 344 KCDLFNK 364 + F++ Sbjct: 122 RSSAFDR 128
>MUTS_SYNPX (Q7UA23) DNA mismatch repair protein mutS| Length = 900 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +3 Query: 3 RVAPATPHARSQPGTRSLCSDSSSPCAHLPPRSTPPQQNTPILGRHYCQVRDAH 164 R APA +A SD+S A PQQ TP+L RHY +++ AH Sbjct: 54 RRAPADHNAADHDSNTDESSDNSDDPAWAHHSQVDPQQLTPML-RHYVELKAAH 106
>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)| (MBP-1-interacting protein 2A) (MIP-2A) Length = 140 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Frame = +2 Query: 176 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 343 K N + ++ + ++ I+L R Q D +K+ +Y LY+++ + NP Y P SPI Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121 Query: 344 KCDLFNK 364 + F++ Sbjct: 122 RSSAFDR 128
>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)| Length = 1297 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +3 Query: 12 PATPHARSQPGTRSLCSDSSSPCAHLPPRSTPPQQN-TPIL 131 P TP R P + L S S S AHLP PP+QN +P+L Sbjct: 1228 PTTPSPRI-PRSCHLLSSSHSSLAHLPAPPVPPRQNSSPLL 1267
>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)| Length = 582 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +3 Query: 9 APATPHARSQPGTRSLCSDSSSPCAHLPPRSTPPQQNTPI 128 AP PH P + +L P AHLP + PQQ TP+ Sbjct: 376 APLPPHPHPHPHSVAL------PPAHLPVQQQQPQQKTPL 409
>KIN25_CAEEL (Q10925) Probable tyrosine-protein kinase kin-25 (EC 2.7.10.2)| Length = 1237 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +3 Query: 15 ATPHARSQPGTRSLCS-DSSSPCAHLPPRSTPPQQNTPI 128 A H+ P T S S D+ +P LPP+++PP NTPI Sbjct: 848 APTHSNVAPTTSSQASADARNP---LPPKTSPPVSNTPI 883
>GLYA_THEVO (Q97CQ5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 426 Score = 30.0 bits (66), Expect = 6.8 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Frame = +2 Query: 2 ASGTGHSARSLATRXQKLMFGLLFSLRSFTAK----IDPTSTEHANLGAPLLPGQGCSFH 169 AS +A++LA L F +L R FT +D T A L G + Sbjct: 282 ASDIIDNAKALAGELYSLGFKVLAEERGFTESHTMAVDVTQNGGGKYVAETLEASGIILN 341 Query: 170 SFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEYVVK 313 ++PSGI++ + RTG + +K I SL +VK Sbjct: 342 KNLLPWDDNKKSQNPSGIRIGVQEVTRTGMGKSEMKEIASLIYRAIVK 389
>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core| protein p15; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 30.0 bits (66), Expect = 6.8 Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Frame = +3 Query: 6 VAPATPHARSQPGTRSLCSDSSSPCAHLPPR---STPPQQNTPILGRHYCQVRDAHFIAS 176 V+P TP S P SL S S+ P + PP TPPQ TP L + +D Sbjct: 167 VSPTTP---SAPTPSSLVSSSTPPSSPAPPELTPRTPPQ--TPRLRLRRAEGQDGP---- 217 Query: 177 RQTRIN*TTWRAHLV*SLFSLPIQELVINEMR*SISTAYMWSML*KILCMLPAAQSSVTF 356 +TW++ SLF L I S S Y W P A +S+ Sbjct: 218 -------STWQS----SLFPLRTVNRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIE 266 Query: 357 SI 362 SI Sbjct: 267 SI 268
>DCAM_TRYBB (P50244) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 370 Score = 29.6 bits (65), Expect = 8.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 140 LLPGQGCSFHSFKTNTYKLNYMESPSGI 223 + P + CSF S++TNT LNY + G+ Sbjct: 263 ITPEEHCSFASYETNTCALNYSKCICGV 290
>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)| (Fragment) Length = 198 Score = 29.6 bits (65), Expect = 8.9 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 12 PATP--HARSQPGTRSLCSDSSSPCAHLPPRSTPPQQNTP 125 PATP HAR P R +S +P H PRS PP +P Sbjct: 16 PATPPTHARPDPTRRHPDPESRAP-PHARPRSPPPPAPSP 54
>TRI66_MOUSE (Q924W6) Tripartite motif protein 66| Length = 1209 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 583 SGPVESHCIVHLQPALMVLCTDCDLIAIHS 672 SG +C +H Q L + C CD++ HS Sbjct: 58 SGDFALYCPLHTQEVLKLFCETCDVLTCHS 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,763,071 Number of Sequences: 219361 Number of extensions: 2213821 Number of successful extensions: 6499 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6480 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
