>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 38/40 (95%), Positives = 38/40 (95%)
 Frame = +2

Query: 2   NTDKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTHE 121
           NTDKWKGLAYDISDDQQDITRGKGIVDSL QAPTG GTHE
Sbjct: 57  NTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHE 96

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 78.6 bits (192), Expect = 5e-15
 Identities = 35/38 (92%), Positives = 36/38 (94%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTHE 121
           D+WKGLAYDISDDQQDITRGKG VDSL QAPTGDGTHE
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHE 97

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +2

Query: 2   NTDKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTHE 121
           + D+WKGLAYDISDDQQDITRGKGIVDSL QAP GDGTHE
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHE 94

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 32/37 (86%), Positives = 35/37 (94%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           D+WKGLAYDISDDQQDITRGKG+VD+L QAP GDGTH
Sbjct: 65  DRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTH 101

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           DKWKGLAYDISDDQQDITRGKG+VD+L QAP   GTH
Sbjct: 69  DKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTH 105

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           DKWKGLAYDISDDQQDITRGKG+VD+L QAP   GTH
Sbjct: 69  DKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTH 105

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 31/39 (79%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   NTDKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           N D+WKGLAYDISDDQQDITRGKG+VD L QAP   GTH
Sbjct: 71  NKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTH 109

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = +2

Query: 2   NTDKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           ++D+WKGL  D SDDQQDITRGKG+VDSL QAPTG GTH
Sbjct: 71  DSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTH 109

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           D+W+GLAYD+SDDQQDITRGKG+VDSL QAP   GTH
Sbjct: 73  DRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTH 109

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           D+W+GLAYD SDDQQDITRGKG+VDS+ QAP G GTH
Sbjct: 69  DRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTH 105

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           D+WKGLA+D SDDQQDITRGKG VDSL QAP G GTH
Sbjct: 69  DRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTH 105

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 5   TDKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           +D+WKGL  D SDDQQDI RGKG+VDSL QAPTG GTH
Sbjct: 72  SDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTH 109

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           DKW+GLA+D SDDQQDITRGKG+ D L QAP G GTH
Sbjct: 66  DKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTH 102

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +2

Query: 8   DKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           D+WKGL  + SDDQQDI RGKG+VDSL QAPTG GTH
Sbjct: 68  DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTH 104

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 28/39 (71%), Positives = 29/39 (74%)
 Frame = +2

Query: 2   NTDKWKGLAYDISDDQQDITRGKGIVDSLXQAPTGDGTH 118
           NTDKW  LA D SDDQ DI RGKG+VDSL QAP   GTH
Sbjct: 65  NTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTH 103

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +2

Query: 11  KWKGL--AYDISDDQQDITRGKGIVDSLXQAPTG-DGTH 118
           +W+ +    D SDDQQDITRG+ +VD L Q   G  GTH
Sbjct: 42  RWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTH 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,516,383
Number of Sequences: 219361
Number of extensions: 181054
Number of successful extensions: 757
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 80,573,946
effective HSP length: 15
effective length of database: 77,283,531
effective search space used: 1854804744
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)