ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal6l09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 218 3e-54
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 218 3e-54
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 210 7e-52
4gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 210 7e-52
5gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 133 1e-28
6gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 123 1e-25
7gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 119 2e-24
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 115 3e-23
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 115 3e-23
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 115 3e-23
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 115 3e-23
12gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 115 3e-23
13gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 109 2e-21
14dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 109 2e-21
15dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
16dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
17dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
18dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
19dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 109 2e-21
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 109 2e-21
21gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 90 2e-15
22dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 1e-13
23gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 80 2e-12
24gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 80 2e-12
25gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 80 2e-12
26gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 74 1e-10
27gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph... 64 1e-07
28gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA... 54 9e-05
29emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car... 50 0.001
30gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 46 0.023
31gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t... 40 1.4
32ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867... 40 1.4
33ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass... 40 1.4
34emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr... 40 1.4
35gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co... 40 1.4
36gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co... 40 1.4
37gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds 40 1.4
38dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 1.4
39gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No... 40 1.4
40ref|XM_957789.1| Neurospora crassa OR74A hypothetical protein (N... 38 5.6
41ref|XM_326132.1| Neurospora crassa OR74A hypothetical protein (N... 38 5.6
42gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 38 5.6
43gb|AE012193.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 5.6
44ref|XM_692763.1| PREDICTED: Danio rerio similar to olfactomedin ... 38 5.6
45gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 5.6
46dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 5.6
47emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in... 38 5.6
48emb|AL935141.16| Zebrafish DNA sequence from clone CH211-173A9 i... 38 5.6
49gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1... 38 5.6 
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  218 bits (110), Expect = 3e-54
 Identities = 118/121 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gaacaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 288

                                                                       
Query: 61  cagagggaagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacga 120
           |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 289 cagagggaagggcatcgtggactccctcttccaggcgcccactggcgacggcacccacga 348

            
Query: 121 g 121
           |
Sbjct: 349 g 349
to top
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  218 bits (110), Expect = 3e-54
 Identities = 118/121 (97%)
 Strand = Plus / Plus

                                                                        
Query: 1    gaacaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5650 gaacaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 5709

                                                                        
Query: 61   cagagggaagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacga 120
            |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||
Sbjct: 5710 cagagggaagggcatcgtggactcgctcttccaggcgcccacggggcacggcacccacga 5769

             
Query: 121  g 121
            |
Sbjct: 5770 g 5770



 Score =  115 bits (58), Expect = 3e-23
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                        
Query: 13   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                             
Query: 73   catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
            |||||||||||| || || ||||| |||| |||||||||||||||||||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgag 3047
to top
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  210 bits (106), Expect = 7e-52
 Identities = 117/121 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 60
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 309 gaacaccgacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcac 368

                                                                       
Query: 61  cagagggaagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacga 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 369 cagagggaagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacga 428

            
Query: 121 g 121
           |
Sbjct: 429 g 429
to top
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  210 bits (106), Expect = 7e-52
 Identities = 117/121 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacaccgacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 60
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 54  gaacaccgacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcac 113

                                                                       
Query: 61  cagagggaagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacga 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 114 cagagggaagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacga 173

            
Query: 121 g 121
           |
Sbjct: 174 g 174
to top
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  133 bits (67), Expect = 1e-28
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           ||||| ||||| ||||| || || |||||||||| |||||| ||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgag 370
to top
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  123 bits (62), Expect = 1e-25
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 13  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                            
Query: 73  catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||||||||| || || ||||| |||| |||||||||||||||||||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgag 325
to top
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  119 bits (60), Expect = 2e-24
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           ||||| ||||| |||||  | || |||||||||| |||||| || |||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgag 360
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  115 bits (58), Expect = 3e-23
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                          
Query: 13     gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                               
Query: 73     catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
              | |||| ||||| || || ||||| |||| ||| || ||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgag 113097



 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                          
Query: 8      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                    
Query: 68     aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
              |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 109593
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  115 bits (58), Expect = 3e-23
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                         
Query: 13    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                              
Query: 73    catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
             | |||| ||||| || || ||||| |||| ||| || ||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgag 34974



 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                         
Query: 8     gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                   
Query: 68    aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
             |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 31470
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  115 bits (58), Expect = 3e-23
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 13       gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                 
Query: 73       catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
                | |||| ||||| || || ||||| |||| ||| || ||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgag 28308236



 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                            
Query: 8        gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                      
Query: 68       aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
                |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 28304732
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  115 bits (58), Expect = 3e-23
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 13       gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                 
Query: 73       catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
                | |||| ||||| || || ||||| |||| ||| || ||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgag 28290685



 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                            
Query: 8        gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                      
Query: 68       aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
                |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 28287181
to top
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  115 bits (58), Expect = 3e-23
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 13  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                            
Query: 73  catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||||||||| || || ||||| |||| |||||||||||||||||||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgag 478
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 325
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 317
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 365
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 354
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 353
to top
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 137
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 358
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  109 bits (55), Expect = 2e-21
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                 
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgag 121
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgag 352
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                               
Query: 68  aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacg 119
           |||||| |||| |||   ||||| |||||||| | ||| |||||||||||||
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacg 324
to top
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 68  aagggcatcgtggactcgctcttncaggc 96
           |||||  |||| ||||| || || |||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 44  gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacg 103
           |||||||||||||||||||| ||||||||||| || ||||| || || ||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                          
Query: 104 ggcgacggcacccac 118
           |||||||| ||||||
Sbjct: 295 ggcgacggaacccac 309
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 44  gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacg 103
           |||||||||||||||||||| ||||||||||| || ||||| || || ||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                          
Query: 104 ggcgacggcacccac 118
           |||||||| ||||||
Sbjct: 158 ggcgacggaacccac 172
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 44  gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacg 103
           |||||||||||||||||||| ||||||||||| || ||||| || || ||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                          
Query: 104 ggcgacggcacccac 118
           |||||||| ||||||
Sbjct: 188 ggcgacggaacccac 202
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 8   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 67
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                           
Query: 68  aagggcatcgtggactcgctcttncaggcgcc 99
           |||||| |||| |||   ||||| ||||||||
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcc 304
to top
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 14  tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 69
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335
to top
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 14  tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
to top
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggc 96
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| ||||| |||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.023
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 39      ccgacgaccagcaggacatcacc 61
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
to top
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 35   atctccgacgaccagcaggacatc 58
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653
to top
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 98   cccacgggcgacggcacccacgag 121
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
to top
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  cccacgggcgacggcacccacgag 121
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726
to top
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 98     cccacgggcgacggcacccacgag 121
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
to top
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccagagggaagggcatcgtg 79
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967
to top
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccagagggaagggcatcgtg 79
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230
to top
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  cccacgggcgacggcacccacgag 121
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 31      cgatatctccgacgaccagc 50
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983
to top
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  cccacgggcgacggcacccacgag 121
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726
to top
>ref|XM_957789.1| Neurospora crassa OR74A hypothetical protein (NCU06278.1) partial
            mRNA
          Length = 3252

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   caggcgcccacgggcgacg 110
            |||||||||||||||||||
Sbjct: 2566 caggcgcccacgggcgacg 2584
to top
>ref|XM_326132.1| Neurospora crassa OR74A hypothetical protein (NCU06278.1) partial
            mRNA
          Length = 3252

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   caggcgcccacgggcgacg 110
            |||||||||||||||||||
Sbjct: 2566 caggcgcccacgggcgacg 2584
to top
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 81      actcgctcttncaggcgcccac 102
               |||||||||| |||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
to top
>gb|AE012193.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 101
            of 460 of the complete genome
          Length = 13054

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    caccgacaagtggaagggt 22
            |||||||||||||||||||
Sbjct: 1968 caccgacaagtggaagggt 1950
to top
>ref|XM_692763.1| PREDICTED: Danio rerio similar to olfactomedin 4 precursor
           (LOC569381), mRNA
          Length = 1423

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 44  gaccagcaggacatcacca 62
           |||||||||||||||||||
Sbjct: 587 gaccagcaggacatcacca 605
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 4       caccgacaagtggaagggt 22
               |||||||||||||||||||
Sbjct: 3939469 caccgacaagtggaagggt 3939487
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 101     acgggcgacggcacccacg 119
               |||||||||||||||||||
Sbjct: 3407046 acgggcgacggcacccacg 3407064
to top
>emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in linkage group 17,
             complete sequence
          Length = 204195

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    gaccagcaggacatcacca 62
             |||||||||||||||||||
Sbjct: 41777 gaccagcaggacatcacca 41795
to top
>emb|AL935141.16| Zebrafish DNA sequence from clone CH211-173A9 in linkage group 17,
             complete sequence
          Length = 136178

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    gaccagcaggacatcacca 62
             |||||||||||||||||||
Sbjct: 68309 gaccagcaggacatcacca 68291
to top
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 49/59 (83%)
 Strand = Plus / Plus

                                                                      
Query: 14  tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 72
           |||| |||||| || |||||| | || || ||||| || |||||||| |||||||||||
Sbjct: 285 tggaggggtctagcctacgatgtttctgatgaccaacaagacatcacaagagggaaggg 343


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 627,529
Number of Sequences: 3902068
Number of extensions: 627529
Number of successful extensions: 37365
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37045
Number of HSP's gapped (non-prelim): 320
length of query: 121
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 100
effective length of database: 17,151,101,840
effective search space: 1715110184000
effective search space used: 1715110184000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top