>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877|
          Length = 164

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = +3

Query: 219 RVLRLRDSTPHHAIVLKMEDGS-DLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEM 395
           RV+ +R   P +  VL + + + D  LPI + ++ +  +    + +  PRP  +++++++
Sbjct: 5   RVVGIRVEQPQNQPVLLLREANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDL 64

Query: 396 TEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVN 575
              +G++++ VRI ++    +Y+ L   +       I    +PSD++ IA R  VPI V 
Sbjct: 65  IAALGHSLKEVRIVDLQEGTFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVE 118

Query: 576 KRI 584
           + +
Sbjct: 119 EAV 121

>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -1

Query: 313 SMTIMGSRRSLPSSILSTIAW*GVESRSLSTRGLFWTHLR---FLPSRILITKPSDTHLS 143
           S++   S  S PSS+L + +     S S S   LF    R   F PS   +  PS T+LS
Sbjct: 156 SLSSSWSSLSSPSSLLVSSSLSLSLSSSYSDTKLFSFDSRSSIFSPSTPTVISPSYTYLS 215

Query: 142 STASMTLESTNSSPLASKFAGGAPSPS 62
           S ++ + + + +S L+S +     SPS
Sbjct: 216 SISATSFQISTTSELSSSWFSTISSPS 242

>VNST_CVMJH (P26625) 30 kDa nonstructural protein (NS2 protein) (Protein 2A)|
          Length = 265

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 244 RLTMLSCSRWKMGAIFCSPLLSWRHQVLCYWPP 342
           RL ++     K+G  +CS L  W  + LCY PP
Sbjct: 165 RLELVKIGSSKVGGFYCSELSIWCGERLCYKPP 197

>Y159_METJA (Q57623) Hypothetical protein MJ0159|
          Length = 542

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 51  GSSSDGDGAPPANFDASGEEFVD--SSVMEAVELRCV 155
           G   +G+G  PANF   G EF++   +++E  EL+C+
Sbjct: 214 GIIENGEGYLPANFRYFGVEFLERFETILEIDELKCI 250

>PCDB1_PANTR (Q5DRE0) Protocadherin beta 1 precursor (PCDH-beta1)|
          Length = 818

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = -1

Query: 307 TIMGSRRSLPSSILSTIAW*GVESRSLSTRGLFWTHLRFLP-----SRILITKPSDTHLS 143
           T +GSR  L S+    +   G+++ +LS  G F  H RF       + +++ KP D    
Sbjct: 146 TPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFRSHGPKYAELVLNKPLDREKQ 205

Query: 142 STASMTLESTNSSPLASKFAGGAPSPS 62
              ++T+ + +         GG+P  S
Sbjct: 206 PEVNLTITAVD---------GGSPPKS 223

>PCDB1_HUMAN (Q9Y5F3) Protocadherin beta 1 precursor (PCDH-beta1)|
          Length = 818

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = -1

Query: 307 TIMGSRRSLPSSILSTIAW*GVESRSLSTRGLFWTHLRFLP-----SRILITKPSDTHLS 143
           T +GSR  L S+    +   G+++ +LS  G F  H RF       + +++ KP D    
Sbjct: 146 TPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFCSHGPKYAELVLNKPLDREEQ 205

Query: 142 STASMTLESTNSSPLASKFAGGAPSPS 62
              ++T+ + +         GG+P  S
Sbjct: 206 PEVNLTITAVD---------GGSPPKS 223

>ABCD1_MOUSE (P48410) ATP-binding cassette sub-family D member 1|
           (Adrenoleukodystrophy protein) (ALDP)
          Length = 736

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 372 IYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEE 500
           I +  KE+TE+ GYT R+  + ++  D  + R    +TG+ EE
Sbjct: 402 IMSSYKEVTELAGYTARVYEMFQVFEDVKHCR--FKRTGDLEE 442

>NFKB2_XENLA (O73630) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor|
           KBF2) [Contains: Nuclear factor NF-kappa-B p52 subunit]
          Length = 958

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
 Frame = +3

Query: 12  HHSTGSWPVRCSYGSSSDGDGAPPANFDASGEEF-----VDSSVMEAVELRCVSDGFVIR 176
           +HS+G     CS  +SS+ +  P  +    GEE       DS+     E +C     ++R
Sbjct: 401 YHSSGHMMKHCSATNSSEKNQQPSISIKKEGEEASACSQTDSATTAQKEAQC---QMIMR 457

Query: 177 MRDGRNLRCVQNNPRVL---------RLRDSTPHHAIVLKMEDGSDLLLPIIVMETPSIM 329
             + R L   Q   R L         R+  +   H    + E+G   L   ++    S++
Sbjct: 458 QANLRMLSLTQRTSRALLDYATTADPRMLLAVQRHLTATQDENGDTPLHLAVIHGQSSVI 517

Query: 330 LLAALRNIRIPRPTIYNVVKEMTE 401
                  + IP   I N+   + +
Sbjct: 518 EQLVQIILSIPNQQILNMSNHLQQ 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,860,179
Number of Sequences: 219361
Number of extensions: 1830677
Number of successful extensions: 5223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5220
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)