ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal6k13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 539 e-150
2ref|NM_192215.1| Oryza sativa (japonica cultivar-group), predic... 107 4e-20
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
5dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
6gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 103 6e-19
7ref|XM_481915.1| Oryza sativa (japonica cultivar-group), mRNA 64 6e-07
8ref|XM_481914.1| Oryza sativa (japonica cultivar-group), mRNA 64 6e-07
9ref|XM_507201.1| PREDICTED Oryza sativa (japonica cultivar-group... 64 6e-07
10dbj|AK112035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
11dbj|AK105899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
12dbj|AK070322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
13gb|AY106382.1| Zea mays PCO146928 mRNA sequence 56 1e-04
14gb|DQ167205.1| Zea mays putative wound responsive protein mRNA, ... 46 0.13
15gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 44 0.52
16dbj|AB009885.1| Nicotiana tabacum wound inducive mRNA , complete... 44 0.52
17ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
18gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.0
20gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, com... 42 2.0
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
22dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
23dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
24gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cance... 42 2.0
25gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 8.1
26gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 8.1
27gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987... 40 8.1
28gb|AC160099.1| Unidentified bacterium clone zdt-45e5, complete s... 40 8.1
29gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complet... 40 8.1
30dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 8.1
31gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, compl... 40 8.1

>dbj|AK065414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J10, full
           insert sequence
          Length = 1348

 Score =  539 bits (272), Expect = e-150
 Identities = 479/548 (87%)
 Strand = Plus / Plus

                                                                       
Query: 29  ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 88
           |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 318 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 377

                                                                       
Query: 89  cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctgtggagctcag 148
            | ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 378 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctgttgagctcag 437

                                                                       
Query: 149 atgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttaggtgtgtcca 208
           | |||| || ||||| || ||||| | |||||| || || | ||||||||| ||||||||
Sbjct: 438 aagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttagatgtgtcca 497

                                                                       
Query: 209 gaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatcgtgctcaa 268
            || ||||| || ||  ||||  ||||||||||| | |||||||||||||| || || ||
Sbjct: 498 aaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctattgttctgaa 557

                                                                       
Query: 269 gatggaagatgggagcgatcttctgctccccattattgtcatggagacaccaagtattat 328
           |||||||||||| || |||||| |||| || ||||| |||||||| ||||||||||||||
Sbjct: 558 gatggaagatggaagtgatcttttgcttccaattatcgtcatggaaacaccaagtattat 617

                                                                       
Query: 329 gctactggccgcccttcggaacattcggattccaaggccaacaatttataatgtggtaaa 388
           | | ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 618 gttgctggctgcccttcggaacattcgaattccaaggccaactatttataatgtggtaaa 677

                                                                       
Query: 389 ggagatgaccgaaatgatgggatacacggtacgtttggtgcggattacagaaatggtgca 448
           |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||| ||
Sbjct: 678 ggagatgaccgaaaggatgggatatgcggtacgtttggtgcggattacagaaatggtcca 737

                                                                       
Query: 449 tgatgcttactactctagattgtatcttgcaaagactggaaatgaagaagaggttattag 508
           |||||| ||||| ||| ||||||||||||| |||| ||| |||||||| |||  ||||||
Sbjct: 738 tgatgcatactattctcgattgtatcttgctaagattggcaatgaagaggagactattag 797

                                                                       
Query: 509 ttttgatctcaagccatcagatgccatcaacattgctttccggtgcaaggttcctataca 568
            || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 798 cttagatctcaagccatcagatgccatcaacattgctttccggtgtaaggttcctataca 857

                   
Query: 569 agtcaata 576
           ||| ||||
Sbjct: 858 agtgaata 865



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>ref|NM_192215.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                       
Query: 29  ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 88
           |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 204 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 263

                                                             
Query: 89  cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 138
            | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 264 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 313



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                            
Query: 29       ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 88
                |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 29069078 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 29069019

                                                                  
Query: 89       cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 138
                 | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 29069018 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 29068969



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                            
Query: 416      ggtacgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatct 475
                |||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||
Sbjct: 29067912 ggtacgtttggtgcggattacagaaatggtccatgatgcatactattctcgattgtatct 29067853

                   
Query: 476      tgc 478
                |||
Sbjct: 29067852 tgc 29067850



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                            
Query: 489      aatgaagaagaggttattagttttgatctcaagccatcagatgccatcaacattgctttc 548
                |||||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 29067513 aatgaagaggagactattagcttagatctcaagccatcagatgccatcaacattgctttc 29067454

                           
Query: 549      cggtgcaaggt 559
                ||||| |||||
Sbjct: 29067453 cggtgtaaggt 29067443



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 138/169 (81%)
 Strand = Plus / Minus

                                                                            
Query: 141      gagctcagatgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttagg 200
                ||||||||| |||| || ||||| || ||||| | |||||| || || | ||||||||| 
Sbjct: 29068686 gagctcagaagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttaga 29068627

                                                                            
Query: 201      tgtgtccagaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatc 260
                |||||||| || ||||| || ||  ||||  ||||||||||| | |||||||||||||| 
Sbjct: 29068626 tgtgtccaaaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctatt 29068567

                                                                 
Query: 261      gtgctcaagatggaagatgggagcgatcttctgctccccattattgtca 309
                || || |||||||||||||| || |||||| |||| || ||||| ||||
Sbjct: 29068566 gttctgaagatggaagatggaagtgatcttttgcttccaattatcgtca 29068518



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                     
Query: 360      ccaaggccaacaatttataatgtggtaaaggagatgaccgaaatgatgggata 412
                ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 29068262 ccaaggccaactatttataatgtggtaaaggagatgaccgaaaggatgggata 29068210



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 310      tggagacaccaagtattatgctactggccgcccttcggaacattcg 355
                |||| ||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 29068430 tggaaacaccaagtattatgttgctggctgcccttcggaacattcg 29068385



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>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0047E11
          Length = 148109

 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                          
Query: 29     ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 88
              |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 113436 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 113377

                                                                
Query: 89     cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 138
               | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 113376 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 113327



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                          
Query: 416    ggtacgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatct 475
              |||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||
Sbjct: 112270 ggtacgtttggtgcggattacagaaatggtccatgatgcatactattctcgattgtatct 112211

                 
Query: 476    tgc 478
              |||
Sbjct: 112210 tgc 112208



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                          
Query: 489    aatgaagaagaggttattagttttgatctcaagccatcagatgccatcaacattgctttc 548
              |||||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 111871 aatgaagaggagactattagcttagatctcaagccatcagatgccatcaacattgctttc 111812

                         
Query: 549    cggtgcaaggt 559
              ||||| |||||
Sbjct: 111811 cggtgtaaggt 111801



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 138/169 (81%)
 Strand = Plus / Minus

                                                                          
Query: 141    gagctcagatgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttagg 200
              ||||||||| |||| || ||||| || ||||| | |||||| || || | ||||||||| 
Sbjct: 113044 gagctcagaagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttaga 112985

                                                                          
Query: 201    tgtgtccagaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatc 260
              |||||||| || ||||| || ||  ||||  ||||||||||| | |||||||||||||| 
Sbjct: 112984 tgtgtccaaaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctatt 112925

                                                               
Query: 261    gtgctcaagatggaagatgggagcgatcttctgctccccattattgtca 309
              || || |||||||||||||| || |||||| |||| || ||||| ||||
Sbjct: 112924 gttctgaagatggaagatggaagtgatcttttgcttccaattatcgtca 112876



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                   
Query: 360    ccaaggccaacaatttataatgtggtaaaggagatgaccgaaatgatgggata 412
              ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 112620 ccaaggccaactatttataatgtggtaaaggagatgaccgaaaggatgggata 112568



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 310    tggagacaccaagtattatgctactggccgcccttcggaacattcg 355
              |||| ||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 112788 tggaaacaccaagtattatgttgctggctgcccttcggaacattcg 112743



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>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                         
Query: 29    ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 88
             |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 29444 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 29385

                                                               
Query: 89    cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 138
              | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 29384 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 29335



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                         
Query: 416   ggtacgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatct 475
             |||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||
Sbjct: 28278 ggtacgtttggtgcggattacagaaatggtccatgatgcatactattctcgattgtatct 28219

                
Query: 476   tgc 478
             |||
Sbjct: 28218 tgc 28216



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                         
Query: 489   aatgaagaagaggttattagttttgatctcaagccatcagatgccatcaacattgctttc 548
             |||||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 27879 aatgaagaggagactattagcttagatctcaagccatcagatgccatcaacattgctttc 27820

                        
Query: 549   cggtgcaaggt 559
             ||||| |||||
Sbjct: 27819 cggtgtaaggt 27809



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 138/169 (81%)
 Strand = Plus / Minus

                                                                         
Query: 141   gagctcagatgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttagg 200
             ||||||||| |||| || ||||| || ||||| | |||||| || || | ||||||||| 
Sbjct: 29052 gagctcagaagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttaga 28993

                                                                         
Query: 201   tgtgtccagaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatc 260
             |||||||| || ||||| || ||  ||||  ||||||||||| | |||||||||||||| 
Sbjct: 28992 tgtgtccaaaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctatt 28933

                                                              
Query: 261   gtgctcaagatggaagatgggagcgatcttctgctccccattattgtca 309
             || || |||||||||||||| || |||||| |||| || ||||| ||||
Sbjct: 28932 gttctgaagatggaagatggaagtgatcttttgcttccaattatcgtca 28884



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                  
Query: 360   ccaaggccaacaatttataatgtggtaaaggagatgaccgaaatgatgggata 412
             ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 28628 ccaaggccaactatttataatgtggtaaaggagatgaccgaaaggatgggata 28576



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 310   tggagacaccaagtattatgctactggccgcccttcggaacattcg 355
             |||| ||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 28796 tggaaacaccaagtattatgttgctggctgcccttcggaacattcg 28751



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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score =  103 bits (52), Expect = 6e-19
 Identities = 81/88 (92%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                         
Query: 50    cggctcgtcatctgacggggacggcgcc-ccgccggcgaacttcgacgccagcggcgagg 108
             |||||| || || ||||| ||||||||| |||||| || |||||||||||||||||||||
Sbjct: 87538 cggctcctcctccgacggcgacggcgccgccgccg-cggacttcgacgccagcggcgagg 87480

                                         
Query: 109   agttcgtcgactccagcgtcatggaggc 136
             ||||||||||||||||||||||||||||
Sbjct: 87479 agttcgtcgactccagcgtcatggaggc 87452



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                      
Query: 503   tattagttttgatctcaagccatcagatgccatcaacattgctttccggtgcaaggt 559
             |||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 86566 tattagttttgacctcaagccatcggatgctatcaacattgctttccgttgcaaggt 86510



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 115/140 (82%)
 Strand = Plus / Minus

                                                                         
Query: 162   ggtttcgtgatcagaatgcgcgacggaagaaaccttaggtgtgtccagaataacccccgc 221
             |||||||| ||||  ||||||||||| |  ||||| ||||| || ||||| ||||| || 
Sbjct: 87319 ggtttcgtcatcaagatgcgcgacggcaagaacctgaggtgcgtgcagaacaaccctcgg 87260

                                                                         
Query: 222   gtgctaaggctgcgggattctacgcctcaccatgctatcgtgctcaagatggaagatggg 281
             ||||| ||||| ||||| ||  |||| ||||| || || ||||||||||||||||| || 
Sbjct: 87259 gtgctcaggctccgggactcggcgccgcaccacgcgattgtgctcaagatggaagacggc 87200

                                 
Query: 282   agcgatcttctgctccccat 301
             ||||| || |||||||||||
Sbjct: 87199 agcgacctcctgctccccat 87180



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                         
Query: 420   cgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatcttgca 479
             |||||||||||||||||||||||||| ||||| || ||||| ||| || |||||||||||
Sbjct: 86736 cgtttggtgcggattacagaaatggtccatgacgcatactattctcgactgtatcttgca 86677

                
Query: 480   aag 482
             |||
Sbjct: 86676 aag 86674



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>ref|XM_481915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1119

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 646 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 693



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>ref|XM_481914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1460

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 941 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 988



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>ref|XM_507201.1| PREDICTED Oryza sativa (japonica cultivar-group), P0426E02.15-2
           mRNA
          Length = 1525

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 921 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 968



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>dbj|AK112035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G04, full
           insert sequence
          Length = 1119

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 646 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 693



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>dbj|AK105899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F07, full
           insert sequence
          Length = 1460

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 941 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 988



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>dbj|AK070322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C20, full
           insert sequence
          Length = 1525

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||||||||||||
Sbjct: 921 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 968



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>gb|AY106382.1| Zea mays PCO146928 mRNA sequence
          Length = 1474

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 572
           ||||||||||| ||||||||| | || |||||||||||| ||||||||
Sbjct: 908 tcagatgccataaacattgctgttcgttgcaaggttcctgtacaagtc 955



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>gb|DQ167205.1| Zea mays putative wound responsive protein mRNA, complete cds
          Length = 717

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 525 tcagatgccatcaacattgctttccggtgcaaggttcct 563
           ||||||||||| ||||||||| | || ||||||||||||
Sbjct: 664 tcagatgccataaacattgctgttcgttgcaaggttcct 702



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 89      cttcgacgccagcggcgaggagttcgtcga 118
               ||||||||||| ||||||||| ||||||||
Sbjct: 5351194 cttcgacgccaccggcgaggatttcgtcga 5351223



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 79      cgccggcgaacttcgacgccagcg 102
               |||||||||||||||| |||||||
Sbjct: 1177604 cgccggcgaacttcgaggccagcg 1177581



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>dbj|AB009885.1| Nicotiana tabacum wound inducive mRNA , complete cds
          Length = 1525

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 528 gatgccatcaacattgctttccggtgcaaggttcctatacaagtcaataa 577
           ||||| |||||||||||| | |  |||||||| || ||||||||||||||
Sbjct: 910 gatgcgatcaacattgctgtgcaatgcaaggtgccaatacaagtcaataa 959



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>ref|XM_470886.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 97  ccagcggcgaggagttcgtcg 117
           |||||||||||||||||||||
Sbjct: 797 ccagcggcgaggagttcgtcg 817



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>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0087G11, complete sequence
          Length = 169728

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    ccagcggcgaggagttcgtcg 117
             |||||||||||||||||||||
Sbjct: 59911 ccagcggcgaggagttcgtcg 59891



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 97       ccagcggcgaggagttcgtcg 117
                |||||||||||||||||||||
Sbjct: 15990506 ccagcggcgaggagttcgtcg 15990526



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>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence
          Length = 252723

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 487    gaaatgaagaagaggttattagttt 511
              ||||||||||||||||||| |||||
Sbjct: 226544 gaaatgaagaagaggttataagttt 226520



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 97       ccagcggcgaggagttcgtcg 117
                |||||||||||||||||||||
Sbjct: 15985040 ccagcggcgaggagttcgtcg 15985060



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>dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C11, full
           insert sequence
          Length = 1679

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  ccagcggcgaggagttcgtcg 117
           |||||||||||||||||||||
Sbjct: 874 ccagcggcgaggagttcgtcg 854



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>dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021B13, full
           insert sequence
          Length = 2092

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 97  ccagcggcgaggagttcgtcg 117
           |||||||||||||||||||||
Sbjct: 949 ccagcggcgaggagttcgtcg 969



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>gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 169229

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 487    gaaatgaagaagaggttattagttt 511
              ||||||||||||||||||| |||||
Sbjct: 145682 gaaatgaagaagaggttataagttt 145706



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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     agcggcgaggagttcgtcga 118
              ||||||||||||||||||||
Sbjct: 287517 agcggcgaggagttcgtcga 287536



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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 79      cgccggcgaacttcgacgccagcg 102
               |||||||||||||||| |||||||
Sbjct: 1564916 cgccggcgaacttcgatgccagcg 1564893



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>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4  ~complete
             genomic sequence, complete sequence
          Length = 174826

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   agactggaaatgaagaagag 500
             ||||||||||||||||||||
Sbjct: 45159 agactggaaatgaagaagag 45140



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>gb|AC160099.1| Unidentified bacterium clone zdt-45e5, complete sequence
          Length = 35743

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   agaatgcgcgacggaagaaa 193
             ||||||||||||||||||||
Sbjct: 21020 agaatgcgcgacggaagaaa 21039



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>gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complete sequence
          Length = 186187

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    agactggaaatgaagaagag 500
              ||||||||||||||||||||
Sbjct: 170229 agactggaaatgaagaagag 170210



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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 528     gatgccatcaacattgcttt 547
               ||||||||||||||||||||
Sbjct: 2100930 gatgccatcaacattgcttt 2100949



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>gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, complete sequence
          Length = 178358

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   ctgtggagctcagatgtgtg 155
             ||||||||||||||||||||
Sbjct: 64092 ctgtggagctcagatgtgtg 64111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,239,733
Number of Sequences: 3902068
Number of extensions: 4239733
Number of successful extensions: 75205
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74965
Number of HSP's gapped (non-prelim): 235
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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