ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal6j12 |
|---|---|
| Clone Library Name | barley_pub |
>IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) Length = 337 Score = 288 bits (738), Expect = 6e-78 Identities = 143/188 (76%), Positives = 158/188 (84%) Frame = +1 Query: 19 AAGGKSFLQAMSTVTEEAAVPLRVVQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGSVL 198 A +SFLQA+S E A PLRVVQ+EGLAVLKIIKHC+EF+P LVTGQLLGLDVGSVL Sbjct: 2 ATMARSFLQAISK-DEAVAPPLRVVQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGSVL 60 Query: 199 EVTNCFPFPIRXXXXXXXXXXXNYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIE 378 EVTNCFPFP+R NYQLEMMRCLREVNVDNNTVGWYQS +LGS+QTVELIE Sbjct: 61 EVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIE 120 Query: 379 TFMNYQENIRRCVCIVYDPSRSSQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWV 558 TFMNYQENI+RCVCI+YDPS++ GVLALKALKL+DSFM+LYR TGEKLREK SW+ Sbjct: 121 TFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWM 180 Query: 559 DIFEEIPI 582 DIFEEIPI Sbjct: 181 DIFEEIPI 188
>IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) Length = 352 Score = 137 bits (345), Expect = 2e-32 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Frame = +1 Query: 82 LRVVQMEGLAVLKIIKHCEEFAPA--LVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXX 255 ++ VQ++GL VLKIIKH +E +V G LLGL V LE+TNCFPFP + Sbjct: 36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADF 94 Query: 256 XXXNYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDP 435 YQ+EMMR LR VN+D+ VGWYQS GSF T L+++ +YQ I V ++YDP Sbjct: 95 DEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDP 154 Query: 436 SRSSQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPI 582 +++QG L+LKA +LT M++ + + E L++ +++ +FEE+PI Sbjct: 155 IKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKASITFEHMFEEVPI 203
>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) Length = 352 Score = 137 bits (344), Expect = 3e-32 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Frame = +1 Query: 82 LRVVQMEGLAVLKIIKHCEEFAPA--LVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXX 255 ++ VQ++GL VLKIIKH +E +V G LLGL V LE+TNCFPFP + Sbjct: 36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADF 94 Query: 256 XXXNYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDP 435 YQ+EMMR LR VN+D+ VGWYQS GSF T L+++ +YQ I V ++YDP Sbjct: 95 DEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDP 154 Query: 436 SRSSQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPI 582 +++QG L+LKA +LT M++ + + E L++ +++ +FEE+PI Sbjct: 155 IKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPI 203
>IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) Length = 352 Score = 136 bits (343), Expect = 4e-32 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Frame = +1 Query: 82 LRVVQMEGLAVLKIIKHCEEFAPA--LVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXX 255 ++ VQ++GL VLKIIKH +E +V G LLGL V LE+TNCFPFP + Sbjct: 36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADF 94 Query: 256 XXXNYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDP 435 YQ+EMMR LR VN+D+ VGWYQS GSF T L+++ +YQ I V ++YDP Sbjct: 95 DEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDP 154 Query: 436 SRSSQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPI 582 +++QG L+LKA +LT M++ + + E L++ +++ +FEE+PI Sbjct: 155 IKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITFEYMFEEVPI 203
>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)| Length = 306 Score = 56.2 bits (134), Expect = 7e-08 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + +A+LK++KH P V G +LG V + V + F P Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDV 86 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q +MM L++ D VGWY S C L S + T ++++ R V +V D Sbjct: 87 FQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVD----VNTQKSFEQLNSRAVAVVVD 142 Query: 433 PSRSSQGVLALKALKLTDS 489 P +S +G + + A +L D+ Sbjct: 143 PIQSVKGKVVIDAFRLIDT 161
>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11| Length = 306 Score = 56.2 bits (134), Expect = 7e-08 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + +A+LK++KH P V G +LG V + V + F P Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDV 86 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q MM L++ D VGWY S C L S + T ++++ R V +V D Sbjct: 87 FQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVD----VNTQKSFEQLNNRAVAVVVD 142 Query: 433 PSRSSQGVLALKALKLTDS 489 P +S +G + + A +L D+ Sbjct: 143 PIQSVKGKVVIDAFRLIDT 161
>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11| Length = 311 Score = 55.8 bits (133), Expect = 9e-08 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK++KH P V G +LG V + V + F P Sbjct: 32 VYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDV 91 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q +MM L++ D VGWY S C L S ++T ++++ R V +V D Sbjct: 92 FQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVD----VDTQRSFEQLNSRAVAVVVD 147 Query: 433 PSRSSQGVLALKALKL 480 P +S +G + + A +L Sbjct: 148 PIQSVKGKVVIDAFRL 163
>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III| Length = 319 Score = 53.5 bits (127), Expect = 4e-07 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK+++H P V G +LG V + VT+ F P Sbjct: 29 VNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPV 88 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 YQ + M L+ V N VGWY S C L S + T +++ R V +V D Sbjct: 89 YQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVD----VNTQQSFEALHPRAVAVVVD 144 Query: 433 PSRSSQGVLALKALK 477 P +S +G + L A + Sbjct: 145 PIQSVKGKVMLDAFR 159
>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)| Length = 308 Score = 51.2 bits (121), Expect = 2e-06 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK+++H P V G +LG V + V + F P Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q MM L++ VGWY S C L S I T ++++ R V +V D Sbjct: 90 FQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVD----INTQQSFEQLTPRAVAVVVD 145 Query: 433 PSRSSQGVLALKALKL 480 P +S +G + + A +L Sbjct: 146 PIQSVKGKVVIDAFRL 161
>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (MAD1) Length = 310 Score = 50.1 bits (118), Expect = 5e-06 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 6/141 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK++KH P V G +LG V + V + F P Sbjct: 31 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPV 90 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q +M+ L++ VGWY S C L I T +++ R V +V D Sbjct: 91 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD----INTQQSFEALSERAVAVVVD 146 Query: 433 PSRSSQGVLALKALKLTDSFM 495 P +S +G + + A +L ++ M Sbjct: 147 PIQSVKGKVVIDAFRLINANM 167
>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome-associated PAD1 homolog 1) Length = 310 Score = 50.1 bits (118), Expect = 5e-06 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 6/141 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK++KH P V G +LG V + V + F P Sbjct: 31 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPV 90 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q +M+ L++ VGWY S C L I T +++ R V +V D Sbjct: 91 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD----INTQQSFEALSERAVAVVVD 146 Query: 433 PSRSSQGVLALKALKLTDSFM 495 P +S +G + + A +L ++ M Sbjct: 147 PIQSVKGKVVIDAFRLINANM 167
>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome regulatory complex subunit p37B) (Yippee-interacting protein 5) Length = 308 Score = 50.1 bits (118), Expect = 5e-06 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 6/141 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK++KH P V G +LG V ++V + F P Sbjct: 29 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPV 88 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q +M+ L++ VGWY S C L I T +++ R V +V D Sbjct: 89 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD----INTQQSFEALSERAVAVVVD 144 Query: 433 PSRSSQGVLALKALKLTDSFM 495 P +S +G + + A +L + M Sbjct: 145 PIQSVKGKVVIDAFRLINPNM 165
>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 308 Score = 47.8 bits (112), Expect = 2e-05 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK++KH P V G +LG V + V + F P Sbjct: 30 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV 89 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q M+ L++ VGWY S C L I T +++ +R V +V D Sbjct: 90 FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD----INTQQSFEALNQRAVAVVVD 145 Query: 433 PSRSSQGVLALKALK 477 P +S +G + + A + Sbjct: 146 PIQSVKGKVVIDAFR 160
>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 312 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPIRXXXXXXXXXXXN 267 V + LA+LK++KH P V G +LG V + V + F P Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92 Query: 268 YQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYD 432 +Q +M+ L++ VGWY S C L I T +++ R V +V D Sbjct: 93 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD----INTQQSFEALSDRAVAVVVD 148 Query: 433 PSRSSQGVLALKALK 477 P +S +G + + A + Sbjct: 149 PIQSVKGKVVIDAFR 163
>CSN5_YARLI (Q6C703) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 354 Score = 43.1 bits (100), Expect = 6e-04 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Frame = +1 Query: 85 RVVQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGSVLEVTNCFPFPIRXXXX--XXXXX 258 R V + +A++K+ H V G + G + + V +C+P P+ Sbjct: 54 RNVLVSSIALVKMAMHARSGGAIEVMGMMTGKILPNTFVVMDCYPLPVEGTETRVNAQQE 113 Query: 259 XXNYQLEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCI 423 + +E ++ L++V N VGWY S C L ++T Q+ + + Sbjct: 114 GIEFMVEYLQGLKDVGRRENIVGWYHSHPGYGCWLSGID----VDTQFQNQQFQEPFLAV 169 Query: 424 VYDPSRS-SQGVLALKALK 477 V DP+R+ S G + + A + Sbjct: 170 VVDPNRTISAGKVEIGAFR 188
>CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 373 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Frame = +1 Query: 106 LAVLKIIKHCEEFAPALVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXXXXXNYQLEMM 285 LA K++ H + V G L+G ++ V +C+ P++ +Y+ + Sbjct: 71 LATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQ 130 Query: 286 RCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSSQ 450 V ++ VGWY S C L + ++ NYQ+ + IV DP +S Sbjct: 131 YLDAFVTKEDKIVGWYHSHPGYGCWLSNID-IQTQSLNQNYQDPY---LAIVVDPKKSLS 186 Query: 451 G 453 G Sbjct: 187 G 187
>CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 469 Score = 40.8 bits (94), Expect = 0.003 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%) Frame = +1 Query: 97 MEGLAVLKIIKHCEEFAPALVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXXXXXNYQ- 273 + LA+ K+ H + V G + G + + + V + +P P+ Y+ Sbjct: 65 ISSLALCKMSVHAKSGGAIEVMGMMTGKIIKNSIIVMDVYPLPVEGTETRVNAQAEGYEY 124 Query: 274 -LEMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYDP 435 ++ + L++V D N VGWY S C L V N+Q+ + IV DP Sbjct: 125 MVQYLENLKQVGRDENIVGWYHSHPGYGCWLSGID-VATQSLNQNFQDPY---LAIVIDP 180 Query: 436 SRS-SQGVLALKALKLTDSFMDLYRN 510 ++ QG + + A + +F D Y++ Sbjct: 181 MKTEDQGKVEIGAFR---TFPDNYKS 203
>CSN5_CANGA (Q6FT36) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 465 Score = 39.3 bits (90), Expect = 0.008 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 12/130 (9%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXXXXXNY 270 V + LA KI+ H + V G LLG +G+ + +CF P+ +Y Sbjct: 74 VLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESY 133 Query: 271 QL------EMMRCLREVNVDN-NTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRC 414 + EM+ N +N N +GWY S C L + ++T Q++ Sbjct: 134 EYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNID----MQTQSLNQQHQDPY 189 Query: 415 VCIVYDPSRS 444 + IV DP +S Sbjct: 190 LAIVVDPHKS 199
>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8| Length = 352 Score = 37.7 bits (86), Expect = 0.024 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 7/124 (5%) Frame = +1 Query: 52 STVTEEAAVPLRVVQMEGLAVLKIIKH-----CEEFAPALVTGQLLGLDVGSVLEVTNCF 216 +T E ++ R V + L +L ++ H + V G LLG + G + V+N F Sbjct: 3 ATTAETLSLVNRSVSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSF 62 Query: 217 --PFPIRXXXXXXXXXXXNYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMN 390 PF NY M ++VN +GWY S +++ E F Sbjct: 63 AVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKR 122 Query: 391 YQEN 402 Y N Sbjct: 123 YTPN 126
>CSN5_ASHGO (Q75E19) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 420 Score = 37.7 bits (86), Expect = 0.024 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Frame = +1 Query: 97 MEGLAVLKIIKHCEEFAPALVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXXXXXNYQL 276 + LA +KI++H + V G LLG ++ V + + P+ +Y+ Sbjct: 75 LSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEY 134 Query: 277 EMMRCLREVNVDNNTVGWYQS-----CLLGSFQTVELIETFMNYQENIRRCVCIVYDPSR 441 + V VGWY S C L E N+Q+ + IV DP R Sbjct: 135 TVQYLETAVPEGLAIVGWYHSHPGYGCWLSGID-AETQTLNQNFQDPY---LAIVVDPKR 190 Query: 442 S-SQGVLALKALK 477 S + GV+ + A + Sbjct: 191 SKASGVIDIGAFR 203
>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7| (26S proteasome regulatory subunit rpn8) (MOV34 protein) Length = 308 Score = 37.0 bits (84), Expect = 0.041 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Frame = +1 Query: 70 AAVPLRVVQMEGLAVLKIIKHCEEFAP---ALVTGQLLGLDVGSVLEVTNCF--PFPIRX 234 +A + V + L +L I+ H A V G LLG V++VTN + PF Sbjct: 10 SARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDD 69 Query: 235 XXXXXXXXXXNYQLEMMRCLREVNVDNNTVGWYQS 339 NY M + +N + VGWY + Sbjct: 70 KDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYST 104
>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)| (Ubiquitin-protein ligase 2) Length = 3658 Score = 36.2 bits (82), Expect = 0.070 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 477 LQGFKS*HSLTRP-RWVIHDTHASPDVLLIVHKCFNQLD 364 L+GFK+ ++ P R IH + SP+ L H CFNQLD Sbjct: 3592 LEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLD 3630
>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)| (Ubiquitin-protein ligase 1) Length = 3684 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 477 LQGFKS*HSLTRP-RWVIHDTHASPDVLLIVHKCFNQLD 364 L+GFK+ ++ P R IH + +P+ L H CFNQLD Sbjct: 3615 LEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLD 3653
>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8| Length = 326 Score = 33.5 bits (75), Expect = 0.46 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCF--PFPIRXXXXXXXX 255 V + L +L ++ H + G LLG + GS ++VTN F PF Sbjct: 8 VNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDVWF 67 Query: 256 XXXNYQLEMMRCLREVNVDNNTVGWYQS 339 NY M +++N +GWY S Sbjct: 68 LDHNYIENMNDMCKKINAKEKMIGWYHS 95
>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8| Length = 337 Score = 32.7 bits (73), Expect = 0.78 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Frame = +1 Query: 163 GQLLGLDVGSVLEVTNCFPFPIRXXXXXXXX--XXXNYQLEMMRCLREVNVDNNTVGWYQ 336 G +LG S + VTN F P NY M +++N +GWY Sbjct: 34 GVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYH 93 Query: 337 SCLLGSFQTVELIETFMNYQEN 402 S +++ E F Y +N Sbjct: 94 SGPKLRASDLKINELFKKYTQN 115
>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8| Length = 324 Score = 32.7 bits (73), Expect = 0.78 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Frame = +1 Query: 157 VTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXX--XXXNYQLEMMRCLREVNVDNNTVGW 330 V G LLG + G V+ V N + P N+ M +++N + VGW Sbjct: 42 VVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGW 101 Query: 331 YQS 339 Y + Sbjct: 102 YHT 104
>HIS7_BUCAP (Q9ZHE4) Histidine biosynthesis bifunctional protein hisB| [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)] Length = 355 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/28 (46%), Positives = 21/28 (75%) Frame = +1 Query: 493 MDLYRNNGLTGEKLREKKLSWVDIFEEI 576 M+L +N LTG + +EK+ +W+DI +EI Sbjct: 135 MELAKNINLTGIQYKEKEFNWIDITKEI 162
>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8| Length = 329 Score = 30.8 bits (68), Expect = 3.0 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Frame = +1 Query: 91 VQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXX-- 255 V + L +L ++ H E G +LG + + VTN F P Sbjct: 8 VTIAPLVLLSVLDHYERTNTPEGKRCVGVILGDSQTNTIRVTNSFALPFEEDEKNSDVWF 67 Query: 256 XXXNYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDP 435 NY M +++N +GWY S +++ E F Y + + ++ D Sbjct: 68 LDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQG--NPLLLIVDV 125 Query: 436 SRSSQGVLALKALKLTDSFM--DLYRNNGLTGEK 531 + G+ TD++M + +++G + EK Sbjct: 126 KQQDVGL-------PTDAYMAVEQVKDDGTSTEK 152
>METX_PSEAE (P57714) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 379 Score = 30.0 bits (66), Expect = 5.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 349 GSFQTVELIETFMNYQENIRRCVCIVYDPSRSSQGV 456 GS ++ ++ ++Y E +R C+CI P S+Q + Sbjct: 156 GSLGGMQALQWTISYPERVRHCLCIASAPKLSAQNI 191
>SMUF2_HUMAN (Q9HAU4) Smad ubiquitination regulatory factor 2 (EC 6.3.2.-)| (Ubiquitin--protein ligase SMURF2) (Smad-specific E3 ubiquitin ligase 2) (hSMURF2) Length = 748 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -2 Query: 477 LQGFKS*HSLTRPR-WVIHDTHASPDVLLIVHKCFNQLD 364 LQGFK+ PR + IH A + L H CFN++D Sbjct: 683 LQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRID 721
>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 357 Score = 29.6 bits (65), Expect = 6.6 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Frame = +1 Query: 85 RVVQMEGLAVLKIIKHCEEF--APALVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXXX 258 RVV++ + + I+ E A V G LLG +EVTNCF P Sbjct: 90 RVVRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVP-HNESEDEVAV 148 Query: 259 XXNYQLEMMRCLREVNVDNNTVGWY 333 + M ++V+ + +GWY Sbjct: 149 DMEFAKNMYELHKKVSPNELILGWY 173
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 29.6 bits (65), Expect = 6.6 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Frame = +1 Query: 85 RVVQMEGLAVLKIIKHCEEF--APALVTGQLLGLDVGSVLEVTNCFPFPIRXXXXXXXXX 258 RVV++ + + I+ E A V G LLG +EVTNCF P Sbjct: 94 RVVRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVP-HNESEDEVAV 152 Query: 259 XXNYQLEMMRCLREVNVDNNTVGWY 333 + M ++V+ + +GWY Sbjct: 153 DMEFAKNMYELHKKVSPNELILGWY 177
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 29.3 bits (64), Expect = 8.6 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -2 Query: 477 LQGFKS*HSLTR-PRWVIHDTHASPDVLLIVHKCFNQLD 364 L GFK + R+ IH + S D L H CFNQLD Sbjct: 3999 LNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLD 4037
>PUB3_SCHPO (O14326) E3 ubiquitin--protein ligase pub3 (EC 6.3.2.-)| Length = 786 Score = 29.3 bits (64), Expect = 8.6 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -2 Query: 477 LQGFKS*HSLTRPRWVIHDTHASPDVLLIVHKCFNQLD 364 + GF+ PR + +PD L + H CFN+LD Sbjct: 722 VNGFRDLQGSDGPRKFTIEKAGTPDQLPVAHTCFNRLD 759
>WDR41_MOUSE (Q3UDP0) WD-repeat protein 41| Length = 460 Score = 29.3 bits (64), Expect = 8.6 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = -2 Query: 240 VVLSYRERKTVGHFQNTTNIQTKQLTCNQSRCKLLTVXXXXXXXXXXXXXDAEWHRRL 67 ++L+ +TVG + T Q +++TC QS K LTV W+R+L Sbjct: 105 LLLTASADRTVGVWDCDTGRQIQRVTCFQSTVKCLTVLQRLDIWLSGGSDLGVWNRKL 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,653,958 Number of Sequences: 219361 Number of extensions: 1536232 Number of successful extensions: 4294 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4283 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
