Clone Information

BLAST Search Result

Clone Name	baal6j07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CYB_TAXTA (O78937) Cytochrome b	33	0.49
2	COX1_RICPR (O54069) Probable cytochrome c oxidase subunit 1 (EC ...	32	1.4
3	COX1_RHILE (Q08855) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	31	1.9
4	COX1_DROSI (Q34388) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	31	2.4
5	COX1_DROSE (Q34391) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	31	2.4
6	COX1_DROMA (Q34345) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	31	2.4
7	CYB_CHECR (Q539Z1) Cytochrome b	31	2.4
8	COX1_DROYA (P00400) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	31	2.4
9	COX1_DROME (P00399) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	31	2.4
10	COX1_MARPO (P26856) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	3.2
11	COX1_RICCN (Q92I67) Probable cytochrome c oxidase subunit 1 (EC ...	30	3.2
12	CYB_IGUIG (Q956S6) Cytochrome b	30	3.2
13	CYB_PLABI (Q94S78) Cytochrome b	30	4.1
14	COX1_BETVU (P24794) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	4.1
15	CYB_PRODD (Q5VJ61) Cytochrome b	30	4.1
16	CYB_BOVIN (P00157) Cytochrome b	30	4.1
17	YMP0_YEAST (Q03687) Hypothetical 46.9 kDa protein in PLB1-HXT2 i...	30	4.1
18	Y225_MYCGE (P47467) Hypothetical protein MG225	30	5.4
19	COX1_WHEAT (P68539) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
20	COX1_ORYSA (P14578) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
21	COX1_AEGCO (P68540) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
22	COX1_SOYBN (P07506) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
23	COX1_RAPSA (P60621) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
24	COX1_ARATH (P60620) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
25	COX1_SORBI (P05502) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
26	AROC_BORPE (Q7VY92) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	30	5.4
27	AROC_BORPA (Q7W950) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	30	5.4
28	AROC_BORBR (Q7WKJ5) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	30	5.4
29	COX1_MAIZE (P08742) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	5.4
30	QACH_STASA (O87868) Quaternary ammonium compound-resistance prot...	30	5.4
31	MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114) (Manno...	29	7.1
32	DAPA_SYMTH (Q67P59) Dihydrodipicolinate synthase (EC 4.2.1.52) (...	29	7.1
33	CYB_HAPGR (Q34724) Cytochrome b	29	7.1
34	PDXT_CLOAB (Q97LG6) Glutamine amidotransferase subunit pdxT (EC ...	29	7.1
35	COX1_ANOQU (P33504) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	29	7.1
36	FUR4_YEAST (P05316) Uracil permease	29	7.1
37	COX1_BRAJA (P31833) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	29	7.1
38	Y318_MYCPN (P75463) Hypothetical protein MG225 homolog (F10_orf491)	29	9.2
39	CYB_PHAFU (Q5VJ57) Cytochrome b	29	9.2
40	CYB_LEMCA (Q34876) Cytochrome b	29	9.2
41	COX1_ANOGA (P34838) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	29	9.2
42	RAG2_XENLA (Q91830) V(D)J recombination-activating protein 2 (RA...	29	9.2

>CYB_TAXTA (O78937) Cytochrome b|
          Length = 379

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +1

Query: 109 FFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           F+  ++ L I   +GG  +EHP+  T G L +++ F+ LLA +PT
Sbjct: 325 FWLLVADLLILTWIGGQPVEHPY-ITIGQLASILYFTILLALMPT 368

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>COX1_RICPR (O54069) Probable cytochrome c oxidase subunit 1 (EC 1.9.3.1)|
           (Cytochrome c oxidase polypeptide I) (Cytochrome aa3
           subunit 1)
          Length = 534

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
 Frame = +1

Query: 175 WA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIFY 336
           WA   FT GL  N + +    +++  +PT  +IF   +T    S+ +   +  A+ +I  
Sbjct: 307 WAHHMFTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGSITFPTPMLFAIGFIIL 366

Query: 337 ALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKIFTA 459
             +    G++++ +A   V+ +T Y++ +  Y      +FTA
Sbjct: 367 FTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTA 408

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>COX1_RHILE (Q08855) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 538

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISF------SSLLAPIPTFYRIFKSKST 273
           F  I ++Y    +GGL     WA    ++G  +        ++++  +PT  +IF   +T
Sbjct: 292 FGYIGMVYAMAAIGGLGFV-VWAHHMYIVGMDLDTEAYFVSATMIIAVPTGIKIFSWIAT 350

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ +   +  A+ +IF   V    G+++   +   V+ +T Y++ +  Y      I
Sbjct: 351 MWGGSIEFATPMLWALAFIFLFTVGGVTGVVLANASLDRVLHDTYYVVAHFHYVLSLGAI 410

Query: 451 F 453
           F
Sbjct: 411 F 411

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>COX1_DROSI (Q34388) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Fragments)
          Length = 511

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F S+ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGSLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A+ ++F   V    G+++  ++   ++ +T Y++ +  Y      +
Sbjct: 326 LHGTQLSYSPAILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>COX1_DROSE (Q34391) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Fragment)
          Length = 499

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F S+ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGSLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A+ ++F   V    G+++  ++   ++ +T Y++ +  Y      +
Sbjct: 326 LHGTQLSYSPAILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>COX1_DROMA (Q34345) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Fragment)
          Length = 499

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F S+ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGSLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A+ ++F   V    G+++  ++   ++ +T Y++ +  Y      +
Sbjct: 326 LHGTQLSYSPAILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>CYB_CHECR (Q539Z1) Cytochrome b|
          Length = 379

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 109 FFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           F+   + L+I   +GG  +EHP+  T G + +++ FS +L  +PT
Sbjct: 325 FWVLTADLFILTWIGGQPVEHPF-ITIGQMASILYFSLILIIMPT 368

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>COX1_DROYA (P00400) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 512

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F S+ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGSLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A+ ++F   V    G+++  ++   ++ +T Y++ +  Y      +
Sbjct: 326 LHGTQLSYSPAILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>COX1_DROME (P00399) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 512

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F S+ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGSLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A+ ++F   V    G+++  ++   ++ +T Y++ +  Y      +
Sbjct: 326 LHGTQLSYSPAILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>COX1_MARPO (P26856) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 522

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 271 FGYLGMVYAMISIGVLGFI-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 329

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   V    G+++  +     + +T Y++ +  Y      +
Sbjct: 330 MWGGSIQYKTPMLFAVGFIFLFTVGGLTGIVLANSGVDIALHDTYYVVAHFHYVLSMGAV 389

Query: 451 F 453
           F
Sbjct: 390 F 390

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>COX1_RICCN (Q92I67) Probable cytochrome c oxidase subunit 1 (EC 1.9.3.1)|
           (Cytochrome c oxidase polypeptide I) (Cytochrome aa3
           subunit 1)
          Length = 532

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
 Frame = +1

Query: 175 WA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIFY 336
           WA   FT GL  N + +    +++  +PT  +IF   +T    S+ +   +  ++ +I  
Sbjct: 305 WAHHMFTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGSITFPTPMLFSIGFIIL 364

Query: 337 ALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKIFTA 459
             +    G++++ +A   V+ +T Y++ +  Y      +FTA
Sbjct: 365 FTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTA 406

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>CYB_IGUIG (Q956S6) Cytochrome b|
          Length = 379

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 91  PHCYTKFFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           P   T F+  IS + I   +GG  +EHP+    G L +V  F+  L  +PT
Sbjct: 319 PFSQTLFWLLISNVLILTWIGGQPVEHPF-IIIGQLASVTYFTLFLVVMPT 368

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>CYB_PLABI (Q94S78) Cytochrome b|
          Length = 380

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 109 FFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           F++ ++ + I   +GG+ +EHP+    G + ++I FS  L  IPT
Sbjct: 325 FWSLVADVMILTWIGGMPVEHPFVI-IGQVASLIYFSLFLVLIPT 368

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>COX1_BETVU (P24794) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 524

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   V    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTVGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>CYB_PRODD (Q5VJ61) Cytochrome b|
          Length = 379

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 109 FFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           F+  ++ LY    +GG  +EHP+  T G   +++ F+ +L  +PT
Sbjct: 325 FWILVADLYTLTWIGGQPVEHPF-ITIGQTASILYFTLILIAMPT 368

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>CYB_BOVIN (P00157) Cytochrome b|
          Length = 379

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 109 FFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           F+A ++ L     +GG  +EHP+  T G L +V+ F  +L  +PT
Sbjct: 325 FWALVADLLTLTWIGGQPVEHPY-ITIGQLASVLYFLLILVLMPT 368

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>YMP0_YEAST (Q03687) Hypothetical 46.9 kDa protein in PLB1-HXT2 intergenic|
           region
          Length = 405

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 24/91 (26%), Positives = 39/91 (42%)
 Frame = +1

Query: 175 WAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIFYALVKTG 354
           W     +  N+ISF+ L +   T   I K K+  GF        L +++L I Y L+   
Sbjct: 46  WLTMQFIANNLISFTPLFSYGTTIISIEKCKTALGFSIDICATMLIASILRISYYLITPY 105

Query: 355 EGLLITINAAGCVIETVYIIMYLVYAPRKAK 447
           E  L+  +     I+ + +   L Y P + K
Sbjct: 106 EITLLRQSLVMIFIQLILLRTSLKYRPDEYK 136

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>Y225_MYCGE (P47467) Hypothetical protein MG225|
          Length = 489

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 19/100 (19%)
 Frame = +1

Query: 190 GLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWI---------FYAL 342
           G+ GN+++   L+A   +FY +    ST+G      ++ALF+++ WI          Y +
Sbjct: 122 GIRGNLVNTWILIAIGFSFYVLLAFISTKGTSLNKKLIALFASVKWIVILSALIVAIYVI 181

Query: 343 VKTGEGLLITINAAG----------CVIETVYIIMYLVYA 432
            + G G     N               I TV+I  +  YA
Sbjct: 182 ARDGNGYSQNNNLESGFFGRREISFAQIATVFITFFYSYA 221

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>COX1_WHEAT (P68539) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 524

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>COX1_ORYSA (P14578) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 524

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>COX1_AEGCO (P68540) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 524

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>COX1_SOYBN (P07506) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 527

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>COX1_RAPSA (P60621) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 527

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>COX1_ARATH (P60620) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 527

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>COX1_SORBI (P05502) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 530

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>AROC_BORPE (Q7VY92) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 353

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 141 CNNGWPIHGAPLGIHL---RPARQRHLFLEPPGPDTNILPDLQEQIHGGVPVGALCR 302
           C  G P+  A +   L   RP   RH+          IL  + E +  G P+G L R
Sbjct: 30  CPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPIGLLIR 86

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>AROC_BORPA (Q7W950) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 353

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 141 CNNGWPIHGAPLGIHL---RPARQRHLFLEPPGPDTNILPDLQEQIHGGVPVGALCR 302
           C  G P+  A +   L   RP   RH+          IL  + E +  G P+G L R
Sbjct: 30  CPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPIGLLIR 86

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>AROC_BORBR (Q7WKJ5) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 353

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 141 CNNGWPIHGAPLGIHL---RPARQRHLFLEPPGPDTNILPDLQEQIHGGVPVGALCR 302
           C  G P+  A +   L   RP   RH+          IL  + E +  G P+G L R
Sbjct: 30  CPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPIGLLIR 86

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>COX1_MAIZE (P08742) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 528

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + ++Y  +++G L     WA   FT GL  +  ++   ++++  +PT  +IF   +T
Sbjct: 270 FGYLGMVYAMISIGVLGFL-VWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIAT 328

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ Y   +  A+ +IF   +    G+++  +     + +T Y++ +  Y      +
Sbjct: 329 MWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAV 388

Query: 451 F 453
           F
Sbjct: 389 F 389

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>QACH_STASA (O87868) Quaternary ammonium compound-resistance protein qacH|
           (Quarternary ammonium determinant H)
          Length = 107

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = +1

Query: 265 KSTEGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAA-----GCVIETVYIIMYLVY 429
           KS++GF  +   +    + L  FY L KT + L + I  A     G V+ T  I+  L++
Sbjct: 21  KSSDGFSKLYPTITTIISFLICFYFLSKTMQHLPLNITYASWAGLGLVLTT--IVSVLIF 78

Query: 430 APRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFH 528
             +   I    I+L++    FG++ + T  + H
Sbjct: 79  KEQINLISIISIILII----FGVVLLNTFGSSH 107

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>MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114)|
           (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase)
           (MAN IIx) (Mannosidase alpha class 2A member 2)
          Length = 1139

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 149 WVAYPWSTLGHSPSAC*ATSSLSRASWPRYQHSTGSSRANPRRGSSRCPM 298
           W  +PW T G          + S  SWP     T ++R  PRR   + P+
Sbjct: 868 WTYHPWWTSG----------TTSTRSWPCTSIQTSTARVQPRRYLKKLPL 907

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>DAPA_SYMTH (Q67P59) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 293

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 228 GPDTNILPDLQEQIHGGVPVGALCRGPIQRDAVDLLRAGQDRR 356
           G D N+LP L    +G + V +   GP  R+ +D   AG   R
Sbjct: 188 GDDANLLPYLTVGAYGIISVASHVVGPQMRELIDAFLAGDTAR 230

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>CYB_HAPGR (Q34724) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 91  PHCYTKFFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIP 240
           P   + F+   + L+I   +GG  +EHP+  T G + +++ FS +L  +P
Sbjct: 319 PLSQSVFWVLTADLFILTWIGGQPVEHPF-ITIGQMASILYFSLILIIMP 367

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>PDXT_CLOAB (Q97LG6) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)|
           (Glutamine amidotransferase glutaminase subunit pdxT)
          Length = 186

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 237 TNILPDLQEQIHGGVPVGALCRGPI 311
           +N+L  L+E+I+GG+PV   C G I
Sbjct: 58  SNMLQPLREKIYGGMPVWGTCAGMI 82

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>COX1_ANOQU (P33504) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 514

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F ++ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGNLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A  ++F   V    G+++  ++   V+ +T Y++ +  Y      +
Sbjct: 326 MHGTQLTYSPAMLWAFGFVFLFTVGGLTGVVLANSSIDIVLHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>FUR4_YEAST (P05316) Uracil permease|
          Length = 633

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +1

Query: 142 VTMGGLSMEHP------WAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYVV 303
           + +G L+   P      WAF   L+G + +FS+++   P F R  K+ ++  +  +  + 
Sbjct: 295 IALGSLTDVQPHGSAFSWAFLRSLMGCMANFSTMVINAPDFSRFSKNPNSALWSQLVCIP 354

Query: 304 ALFS 315
            LFS
Sbjct: 355 FLFS 358

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>COX1_BRAJA (P31833) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 541

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F  + + Y  V +GG+     WA   +T G+     ++   ++++  +PT  +IF   +T
Sbjct: 295 FGYLGMAYAMVAIGGIGFV-VWAHHMYTVGMSSATQAYFVAATMVIAVPTGVKIFSWIAT 353

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
               S+ +   +  A+ +IF   V    G+++       V+ ET Y++ +  Y      +
Sbjct: 354 MWGGSIEFRAPMIWAVGFIFLFTVGGVTGVVLANAGVDRVLQETYYVVAHFHYVLSLGAV 413

Query: 451 F 453
           F
Sbjct: 414 F 414

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>Y318_MYCPN (P75463) Hypothetical protein MG225 homolog (F10_orf491)|
          Length = 491

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSV 291
           +A+I+ L+I     G+          G+ GN  +   L+A   TFY +    ST+G    
Sbjct: 105 YAAIAPLFILSAFKGID---------GIQGNAANTWILIAAGFTFYLLLAFLSTKGTSLN 155

Query: 292 PYVVALFSAMLW 327
             ++A+F+++ W
Sbjct: 156 KKLIAVFASIKW 167

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>CYB_PHAFU (Q5VJ57) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 91  PHCYTKFFASISLLYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIPT 243
           P   T F+  +S L+I   +GG  +E+P+    G   +++ FS +L  +PT
Sbjct: 319 PLSQTLFWILVSDLFILTWIGGQPVEYPF-IIIGQSASILYFSLILILMPT 368

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>CYB_LEMCA (Q34876) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 130 LYIFVTMGGLSMEHPWAFTFGLLGNVISFSSLLAPIP 240
           L+I   +GG  +EHP+  T G + +++ FS +L  +P
Sbjct: 332 LFILTWIGGQPVEHPF-ITIGQMASILYFSLILIMMP 367

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>COX1_ANOGA (P34838) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 514

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
 Frame = +1

Query: 112 FASISLLYIFVTMGGLSMEHPWA---FTFGLLGNVISF---SSLLAPIPTFYRIFKSKST 273
           F ++ ++Y  + +G L     WA   FT G+  +  ++   ++++  +PT  +IF   +T
Sbjct: 267 FGNLGMIYAMLAIGLLGFI-VWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLAT 325

Query: 274 EGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKI 450
                + Y  A+  A  ++F   V    G+++  ++   V+ +T Y++ +  Y      +
Sbjct: 326 LHGTQLTYSPAMLWAFGFVFLFTVGGLTGVVLANSSIDIVLHDTYYVVAHFHYVLSMGAV 385

Query: 451 F 453
           F
Sbjct: 386 F 386

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>RAG2_XENLA (Q91830) V(D)J recombination-activating protein 2 (RAG-2)|
          Length = 520

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 102 YQVLRIHLTVIYLCNNGWPIHGAPLGIHLRPARQRHLFLEP 224
           + +L     V YL   GWP    P G+ L   +   L L P
Sbjct: 19  FSLLHFSSHVFYLGQKGWPKRSCPTGVFLLDLKNNDLKLRP 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,019,687
Number of Sequences: 219361
Number of extensions: 1316328
Number of successful extensions: 4596
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 4471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4594
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result