>LAMB3_MOUSE (Q61087) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Kalinin|
           B1 chain)
          Length = 1168

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +2

Query: 65  TTLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNRGVKIFGVRLTD 244
           T LR +    +P+P R + P  A  A    R    C  +GH  R  PN G     VR+ +
Sbjct: 215 TNLRVNFTKLAPVPQRGSYPPSAYFAVSQLRLQGSCFCHGHADRCAPNPGGSTTAVRVNN 274

>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 27.7 bits (60), Expect(2) = 0.71
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 83  SQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRT 199
           S+PT+P P RR+  AG + AP      S  +  G +  T
Sbjct: 370 SEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETT 408



 Score = 23.1 bits (48), Expect(2) = 0.71
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 202 PQPRGQDLRGAPHRWIHPQERQHGEPLP 285
           P+   + LRGAPHR   P+      P P
Sbjct: 422 PEEPSRFLRGAPHRHSMPELGLRSVPEP 449

>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)|
          Length = 611

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 181 RPQLADVPQPRGQDLRGAPHRWIHPQERQHGEPLP 285
           RP++A  P P        PH   HPQ R H    P
Sbjct: 23  RPEIAHTPDPAALGEESTPHAHAHPQARHHHHAHP 57

>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Proline- and
           glutamine-rich protein) (PQR protein)
          Length = 261

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 181 RPQLADVPQPRGQDLRGAPHRWIHPQERQHGEPLP 285
           +PQ    PQP+ Q L   PH   HP    H  P P
Sbjct: 188 QPQPQPQPQPQPQQLHSYPHPHPHPYSHPHQHPHP 222

>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
           (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +1

Query: 139 GSGDDEAVLALQLQRPQL------ADVPQPRGQDL---RGAPHRWIHPQERQH 270
           G GD+E + A   + P +      +  P P G  L     AP RWI P +R+H
Sbjct: 502 GPGDEEDLAAATTEEPLITAGGEESGSPPPDGPPLPLPTVAPERWITPAQREH 554

>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2|
           (Pseudo-response regulator 2) (TOC2 protein)
          Length = 535

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 383 SANRERKKGVPWTEEEHRRFLLGLQKLG 466
           S N+  +K V WT E H++F+  +++LG
Sbjct: 290 SGNKTSRKKVDWTPELHKKFVQAVEQLG 317

>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 181 RPQLADVPQPRGQDLRGAPHRWIHPQERQHGEPLP 285
           +PQ    P+P+ Q L   PH   HP    H  P P
Sbjct: 192 QPQPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHP 226

>ZCH12_MOUSE (Q9CZA5) Zinc finger CCHC domain-containing protein 12|
           (Smad-interacting zinc finger protein)
          Length = 402

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 152 TRRCSHCSYNGHNSRTCPNRGVK 220
           T  CSHC   GH+  TC N   K
Sbjct: 345 TIHCSHCGEEGHSKETCDNESDK 367

>LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)|
          Length = 3075

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68   TLRFSSQPTSPLPFRRATPAGALAAPG-MTRRCSHCSYNGHNSRTCPNRG 214
            T+ FS Q  +P   R   PAG+   P  +   C  CS N H+    PN G
Sbjct: 1368 TVGFSCQDCAPGYHRGKLPAGSDRGPRPLVAPCVPCSCNNHSDTCDPNTG 1417

>GLTB_ANTSP (Q06434) Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)|
            (Fd-GOGAT)
          Length = 1536

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 364  VVGGVALRGGASPADV-GHDAAGGSSEQGEVPHAGALADGSIGEAH 230
            +  GVA +G A    + GHD   G+S    + HAGA  D  + E H
Sbjct: 1065 IAAGVA-KGNADIIQISGHDGGTGASPLSSIKHAGAPWDVGLAEVH 1109

>ZCH12_HUMAN (Q6PEW1) Zinc finger CCHC domain-containing protein 12|
          Length = 402

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 152 TRRCSHCSYNGHNSRTCPNRGVK 220
           T RCS+C   GH+  TC N   K
Sbjct: 344 TIRCSYCGEEGHSKETCDNESDK 366

>PAM17_USTMA (Q4P983) Presequence translocated-associated motor subunit PAM17,|
           mitochondrial precursor
          Length = 232

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 29  LRCSXXXXXXTATTLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYN 181
           L  S      ++++ R +  PTSP+ F  ++ + + ++P  +R  SH S++
Sbjct: 33  LSTSSKVASSSSSSNRGTFSPTSPILFSASSSSSSSSSPSSSRELSHLSWD 83

>ZCH12_RAT (Q5HZA3) Zinc finger CCHC domain-containing protein 12|
          Length = 401

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 152 TRRCSHCSYNGHNSRTCPN 208
           T  CSHC   GH+  TC N
Sbjct: 344 TVHCSHCGEEGHSKETCDN 362

>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 161 CSHCSYNGHNSRTCPNRGVKIF 226
           C++C+ NGH    CP++  K+F
Sbjct: 114 CTNCNANGHYKSQCPHKWKKVF 135

>BIK1_YEAST (P11709) Nuclear fusion protein BIK1|
          Length = 440

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 122 PAGALAAPGMTRRCSHCSYNGHNSRTCPN 208
           PA      G  + C HC   GHN+  CP+
Sbjct: 403 PAPVDTTAGRQQWCEHCDTMGHNTAECPH 431

>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p|
           Ib)
          Length = 308

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = +2

Query: 80  SSQPTSPLPFRRATPAGALAAPGMTRRC------------SHCSYNGHNSRTCPNRGVKI 223
           SS+P SP P R ++P  A  APG+  +             +H        R CP+R +++
Sbjct: 86  SSRPPSPSPPRASSPTSAAKAPGLIPKLDTAYDVAYKAAEAHPRGQVRRLRHCPHRSLRV 145

>SSBP4_HUMAN (Q9BWG4) Single-stranded DNA-binding protein 4|
          Length = 385

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +2

Query: 68  TLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNRGVKIFGVRLTDG 247
           TLR  SQP + LP  +    GA+      R   H S  G   R  P RG+   G +   G
Sbjct: 159 TLRMPSQPPAGLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG 216

Query: 248 SIR 256
            +R
Sbjct: 217 GMR 219

>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 155 RRCSHCSYNGHNSRTCPNRG 214
           R+C  C  +GH SR CP+ G
Sbjct: 196 RKCYKCGESGHMSRECPSAG 215

>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
            III alpha)
          Length = 1250

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 104  PFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNR 211
            P  R+ P    +    TRRC  C   GH    CP +
Sbjct: 1210 PPGRSQPTAITSDGPKTRRCGLCRKEGHTRNKCPRK 1245

>BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 80  SSQPTSPLPFRRATPAGALAAPG-MTRRCSHCSYNGHNSRTCPNRGVKIF 226
           SS+P+SP P +RA+P G++++ G  +R  S  S +G    +C   G  +F
Sbjct: 107 SSRPSSPRP-QRASPNGSMSSAGNSSRNSSQSSSDG----SCKTSGEMVF 151

>TRPB_THETN (Q8R9M9) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 391

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 319 VGHDAAGGSSEQGEVPHAGALADGSIGEAH 230
           VG +AAG   E G+  HA A+A GS+G  H
Sbjct: 250 VGVEAAGEGIETGK--HASAMAKGSVGVLH 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,520,146
Number of Sequences: 219361
Number of extensions: 1110126
Number of successful extensions: 4762
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4747
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)